Wall clock time and date at job start Wed Apr 1 2020 04:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47215 * 2 1 4 4 N 1.46499 * 109.47574 * 239.99318 * 2 1 3 5 5 C 1.36939 * 119.99967 * 84.99908 * 4 2 1 6 6 H 1.08004 * 119.99797 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00166 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99942 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 119.99898 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47483 * 90.00374 * 9 7 5 11 11 H 1.48506 * 109.47340 * 210.00125 * 9 7 5 12 12 H 1.48501 * 109.47499 * 329.99850 * 9 7 5 13 13 C 1.52996 * 109.46934 * 119.99439 * 2 1 3 14 14 H 1.08998 * 109.49973 * 179.97438 * 13 2 1 15 15 C 1.53042 * 109.50066 * 300.00080 * 13 2 1 16 16 C 1.53039 * 109.54198 * 181.31673 * 15 13 2 17 17 C 1.53196 * 109.33748 * 298.62051 * 16 15 13 18 18 N 1.46995 * 108.73708 * 54.62190 * 17 16 15 19 19 C 1.34779 * 120.60954 * 126.39083 * 18 17 16 20 20 O 1.21283 * 119.99350 * 180.02562 * 19 18 17 21 21 C 1.50691 * 120.00268 * 0.02562 * 19 18 17 22 22 O 1.42902 * 109.47140 * 180.02562 * 21 19 18 23 23 C 1.42897 * 114.00290 * 180.02562 * 22 21 19 24 24 C 1.50703 * 109.47377 * 179.97438 * 23 22 21 25 25 C 1.38672 * 120.41595 * 269.71961 * 24 23 22 26 26 C 1.38624 * 118.42106 * 179.78021 * 25 24 23 27 27 C 1.38230 * 119.15990 * 0.51345 * 26 25 24 28 28 N 1.31855 * 120.76385 * 359.72617 * 27 26 25 29 29 C 1.31888 * 121.72413 * 0.02562 * 28 27 26 30 30 C 1.46925 * 118.75597 * 306.40484 * 18 17 16 31 31 H 1.09002 * 109.47588 * 300.00327 * 1 2 3 32 32 H 1.09004 * 109.47050 * 60.00421 * 1 2 3 33 33 H 1.08999 * 109.47215 * 179.97438 * 1 2 3 34 34 H 0.96993 * 120.00348 * 265.00476 * 4 2 1 35 35 H 0.96998 * 119.99705 * 179.97438 * 8 7 5 36 36 H 1.09006 * 109.45643 * 61.29307 * 15 13 2 37 37 H 1.08998 * 109.45200 * 301.33200 * 15 13 2 38 38 H 1.09002 * 109.49756 * 58.58775 * 16 15 13 39 39 H 1.09000 * 109.49883 * 178.65518 * 16 15 13 40 40 H 1.09001 * 109.58261 * 174.43824 * 17 16 15 41 41 H 1.08996 * 109.58319 * 294.86146 * 17 16 15 42 42 H 1.09001 * 109.47360 * 300.00020 * 21 19 18 43 43 H 1.08998 * 109.47712 * 60.00365 * 21 19 18 44 44 H 1.09002 * 109.46965 * 299.99456 * 23 22 21 45 45 H 1.09000 * 109.47147 * 59.99456 * 23 22 21 46 46 H 1.08006 * 120.79055 * 0.02562 * 25 24 23 47 47 H 1.07999 * 120.42372 * 180.26340 * 26 25 24 48 48 H 1.08003 * 119.62284 * 179.74657 * 27 26 25 49 49 H 1.07995 * 119.61699 * 180.02562 * 29 28 27 50 50 H 1.09004 * 109.58683 * 293.82929 * 30 18 17 51 51 H 1.08994 * 109.70376 * 173.46782 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1492 -0.0077 -2.3757 6 1 1.8927 1.0403 -2.4242 7 6 2.6115 -0.6623 -3.5091 8 7 2.7377 -0.0056 -4.6428 9 14 3.0558 -2.4746 -3.4250 10 1 1.8585 -3.2932 -3.7439 11 1 4.1309 -2.7668 -4.4069 12 1 3.5314 -2.8048 -2.0575 13 6 2.0399 -0.7211 1.2493 14 1 3.1299 -0.7218 1.2496 15 6 1.5301 -0.0001 2.4992 16 6 2.0665 -0.7013 3.7493 17 6 1.5532 -2.1443 3.7812 18 7 1.9148 -2.8022 2.5174 19 6 2.5905 -3.9684 2.5195 20 8 2.8836 -4.5012 1.4702 21 6 2.9817 -4.6101 3.8256 22 8 3.6838 -5.8276 3.5667 23 6 4.1016 -6.5195 4.7451 24 6 4.8271 -7.7818 4.3559 25 6 4.1312 -8.9704 4.1951 26 6 4.8392 -10.1055 3.8320 27 6 6.2072 -10.0179 3.6540 28 7 6.8369 -8.8714 3.8204 29 6 6.1950 -7.7707 4.1608 30 6 1.5263 -2.1644 1.2521 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2490 -1.6318 -1.1524 35 1 3.0611 -0.4630 -5.4347 36 1 0.4403 -0.0203 2.5110 37 1 1.8739 1.0342 2.4873 38 1 3.1563 -0.7032 3.7260 39 1 1.7226 -0.1731 4.6386 40 1 2.0108 -2.6765 4.6151 41 1 0.4693 -2.1441 3.8958 42 1 3.6256 -3.9318 4.3853 43 1 2.0857 -4.8240 4.4082 44 1 4.7683 -5.8808 5.3244 45 1 3.2285 -6.7733 5.3462 46 1 3.0624 -9.0100 4.3453 47 1 4.3291 -11.0474 3.6938 48 1 6.7668 -10.8985 3.3751 49 1 6.7448 -6.8498 4.2876 50 1 0.4401 -2.1658 1.1606 51 1 1.9642 -2.7096 0.4161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732533434.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:32 Heat of formation + Delta-G solvation = -26.306797 kcal Electronic energy + Delta-G solvation = -30505.527601 eV Core-core repulsion = 26405.540073 eV Total energy + Delta-G solvation = -4099.987528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.59815 -40.32906 -38.48895 -37.42769 -35.62954 -33.34662 -33.03774 -32.12914 -31.95034 -30.40118 -29.05278 -27.88462 -26.47437 -25.15953 -24.23836 -23.94216 -23.01895 -22.41074 -21.18824 -19.73581 -18.75237 -17.90101 -17.52167 -17.29888 -17.07205 -16.79130 -16.15041 -15.86244 -15.54673 -14.89713 -14.72818 -14.69195 -14.38633 -14.12444 -14.04070 -13.87735 -13.49530 -13.41888 -13.21566 -13.14530 -12.72959 -12.61175 -12.49445 -12.37831 -12.13747 -11.78797 -11.67585 -11.36840 -11.15969 -10.87956 -10.72275 -10.55200 -10.35028 -10.22465 -10.17574 -10.11207 -9.93962 -9.79268 -9.69826 -9.49461 -9.42482 -8.87587 -8.59773 -7.21915 -5.71339 -3.06750 0.64733 0.91346 2.53601 2.59009 3.32686 3.48115 3.54770 3.58764 3.73276 4.09075 4.27482 4.35542 4.49215 4.53658 4.57092 4.61279 4.67563 4.72398 4.74403 4.83555 4.85133 4.89659 4.96496 5.08990 5.18852 5.23234 5.26871 5.38932 5.46211 5.55185 5.58296 5.71209 5.71513 5.73889 5.78931 5.84473 5.96312 5.97507 6.15766 6.22827 6.26255 6.30220 6.39511 6.47835 6.59419 6.67910 6.79108 7.05071 7.32817 7.60843 8.04525 8.15069 8.47798 9.26585 9.99832 10.18621 11.46822 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010357 B = 0.002598 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.884927 B =10775.613118 C =12937.234106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.185 3.815 3 H 0.058 0.942 4 N -0.750 5.750 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.935 5.935 9 Si 0.877 3.123 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.273 1.273 13 C -0.108 4.108 14 H 0.075 0.925 15 C -0.114 4.114 16 C -0.135 4.135 17 C 0.106 3.894 18 N -0.611 5.611 19 C 0.510 3.490 20 O -0.512 6.512 21 C 0.047 3.953 22 O -0.356 6.356 23 C 0.106 3.894 24 C -0.143 4.143 25 C -0.053 4.053 26 C -0.176 4.176 27 C 0.104 3.896 28 N -0.487 5.487 29 C 0.123 3.877 30 C 0.116 3.884 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.362 0.638 35 H 0.259 0.741 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.157 0.843 49 H 0.157 0.843 50 H 0.074 0.926 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.291 -12.909 29.090 31.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.075 3.925 3 H 0.076 0.924 4 N -0.393 5.393 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.583 5.583 9 Si 0.707 3.293 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.199 1.199 13 C -0.128 4.128 14 H 0.093 0.907 15 C -0.152 4.152 16 C -0.173 4.173 17 C -0.017 4.017 18 N -0.346 5.346 19 C 0.296 3.704 20 O -0.386 6.386 21 C -0.033 4.033 22 O -0.274 6.274 23 C 0.029 3.971 24 C -0.145 4.145 25 C -0.079 4.079 26 C -0.196 4.196 27 C -0.053 4.053 28 N -0.195 5.195 29 C -0.034 4.034 30 C -0.006 4.006 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.195 0.805 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.154 0.846 47 H 0.155 0.845 48 H 0.174 0.826 49 H 0.174 0.826 50 H 0.093 0.907 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.154 -13.090 28.005 30.913 hybrid contribution -0.717 -1.199 0.277 1.425 sum -0.871 -14.289 28.282 31.699 Atomic orbital electron populations 1.22543 0.99000 1.00864 1.00547 1.20144 0.92026 0.95579 0.84722 0.92379 1.42887 1.79690 1.09613 1.07158 1.19048 1.37038 0.95546 0.85572 0.89204 1.24636 1.01321 0.97409 0.95580 1.69701 1.52751 1.35562 1.00263 0.86660 0.78302 0.86770 0.77551 1.21051 1.21717 1.19876 1.21831 1.01125 0.94116 0.95708 0.90704 1.21611 1.01027 0.99368 0.93203 1.21934 1.01498 0.94882 0.99026 1.21790 1.00538 0.93949 0.85414 1.48134 1.56635 1.21888 1.07987 1.20167 0.78403 0.81086 0.90730 1.90790 1.52689 1.62009 1.33151 1.22268 0.97433 0.87722 0.95885 1.88132 1.74969 1.34872 1.29435 1.21258 0.97678 0.90635 0.87540 1.20553 0.95378 0.94991 1.03540 1.21535 1.00430 0.91931 0.93987 1.22171 0.95895 0.99702 1.01841 1.22868 0.92127 0.95865 0.94467 1.67755 1.40694 0.99216 1.11847 1.22731 0.91146 0.96653 0.92885 1.21826 1.00055 0.93310 0.85388 0.93894 0.92356 0.93448 0.80463 0.93115 0.91206 0.91299 0.91469 0.90723 0.90366 0.90996 0.90146 0.90288 0.91695 0.91935 0.84646 0.84489 0.82567 0.82590 0.90742 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 8.79 37.15 0.33 -2.48 16 2 C 0.19 3.44 2.72 -67.94 -0.18 3.25 16 3 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 4 N -0.75 -17.99 4.85 -53.43 -0.26 -18.25 16 5 C -0.24 -6.93 10.41 -15.06 -0.16 -7.09 16 6 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 7 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -30.09 13.97 55.49 0.78 -29.32 16 9 Si 0.88 23.66 27.73 -169.99 -4.71 18.94 16 10 H -0.28 -7.62 7.11 56.52 0.40 -7.21 16 11 H -0.29 -7.92 7.11 56.52 0.40 -7.51 16 12 H -0.27 -7.25 6.52 56.52 0.37 -6.88 16 13 C -0.11 -1.62 2.33 -90.50 -0.21 -1.83 16 14 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.11 -1.23 4.78 -26.69 -0.13 -1.36 16 16 C -0.14 -1.10 6.08 -26.61 -0.16 -1.27 16 17 C 0.11 0.84 6.34 -3.67 -0.02 0.82 16 18 N -0.61 -7.76 2.97 -172.71 -0.51 -8.27 16 19 C 0.51 7.46 7.77 -10.99 -0.09 7.38 16 20 O -0.51 -10.48 15.92 -14.35 -0.23 -10.71 16 21 C 0.05 0.45 4.76 36.00 0.17 0.62 16 22 O -0.36 -4.31 9.86 -55.14 -0.54 -4.85 16 23 C 0.11 0.83 6.09 36.01 0.22 1.05 16 24 C -0.14 -1.33 5.53 -104.48 -0.58 -1.91 16 25 C -0.05 -0.44 9.86 -39.28 -0.39 -0.83 16 26 C -0.18 -1.35 10.11 -39.44 -0.40 -1.75 16 27 C 0.10 0.91 11.18 -17.54 -0.20 0.72 16 28 N -0.49 -5.43 10.36 -13.25 -0.14 -5.56 16 29 C 0.12 1.25 10.86 -17.55 -0.19 1.06 16 30 C 0.12 1.80 5.21 -3.71 -0.02 1.78 16 31 H 0.04 0.57 6.46 -51.93 -0.34 0.23 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.77 6.32 -51.93 -0.33 0.44 16 34 H 0.36 8.87 4.03 -40.82 -0.16 8.71 16 35 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 36 H 0.07 0.70 6.50 -51.93 -0.34 0.36 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.41 5.94 -51.93 -0.31 0.10 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.56 7.69 -51.93 -0.40 0.16 16 43 H 0.08 0.52 7.94 -51.93 -0.41 0.10 16 44 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 45 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 46 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 47 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 48 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 49 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 50 H 0.07 1.09 6.18 -51.93 -0.32 0.77 16 51 H 0.09 1.84 5.60 -51.93 -0.29 1.55 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -38.57 403.11 -9.62 -48.20 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -7.98 Total: 5.48 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.10 Total: -1.73 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.13 Total: -61.40 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.77 Total: -15.56 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.71 Total: 18.94 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -38.57 -9.62 -48.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732533434.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.890 kcal (2) G-P(sol) polarization free energy of solvation -38.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds