Wall clock time and date at job start Wed Apr 1 2020 04:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47215 * 2 1 4 4 N 1.46499 * 109.47574 * 239.99318 * 2 1 3 5 5 C 1.36939 * 119.99967 * 84.99908 * 4 2 1 6 6 H 1.08004 * 119.99797 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00166 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99942 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 119.99898 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47483 * 90.00374 * 9 7 5 11 11 H 1.48506 * 109.47340 * 210.00125 * 9 7 5 12 12 H 1.48501 * 109.47499 * 329.99850 * 9 7 5 13 13 C 1.52996 * 109.46934 * 119.99439 * 2 1 3 14 14 H 1.08998 * 109.49973 * 179.97438 * 13 2 1 15 15 C 1.53042 * 109.50066 * 300.00080 * 13 2 1 16 16 C 1.53039 * 109.54198 * 181.31673 * 15 13 2 17 17 C 1.53196 * 109.33748 * 298.62051 * 16 15 13 18 18 N 1.46995 * 108.73708 * 54.62190 * 17 16 15 19 19 C 1.34779 * 120.60954 * 126.39083 * 18 17 16 20 20 O 1.21283 * 119.99350 * 180.02562 * 19 18 17 21 21 C 1.50691 * 120.00268 * 0.02562 * 19 18 17 22 22 O 1.42902 * 109.47140 * 180.02562 * 21 19 18 23 23 C 1.42897 * 114.00290 * 180.02562 * 22 21 19 24 24 C 1.50703 * 109.47377 * 179.97438 * 23 22 21 25 25 C 1.38672 * 120.41595 * 269.71961 * 24 23 22 26 26 C 1.38624 * 118.42106 * 179.78021 * 25 24 23 27 27 C 1.38230 * 119.15990 * 0.51345 * 26 25 24 28 28 N 1.31855 * 120.76385 * 359.72617 * 27 26 25 29 29 C 1.31888 * 121.72413 * 0.02562 * 28 27 26 30 30 C 1.46925 * 118.75597 * 306.40484 * 18 17 16 31 31 H 1.09002 * 109.47588 * 300.00327 * 1 2 3 32 32 H 1.09004 * 109.47050 * 60.00421 * 1 2 3 33 33 H 1.08999 * 109.47215 * 179.97438 * 1 2 3 34 34 H 0.96993 * 120.00348 * 265.00476 * 4 2 1 35 35 H 0.96998 * 119.99705 * 179.97438 * 8 7 5 36 36 H 1.09006 * 109.45643 * 61.29307 * 15 13 2 37 37 H 1.08998 * 109.45200 * 301.33200 * 15 13 2 38 38 H 1.09002 * 109.49756 * 58.58775 * 16 15 13 39 39 H 1.09000 * 109.49883 * 178.65518 * 16 15 13 40 40 H 1.09001 * 109.58261 * 174.43824 * 17 16 15 41 41 H 1.08996 * 109.58319 * 294.86146 * 17 16 15 42 42 H 1.09001 * 109.47360 * 300.00020 * 21 19 18 43 43 H 1.08998 * 109.47712 * 60.00365 * 21 19 18 44 44 H 1.09002 * 109.46965 * 299.99456 * 23 22 21 45 45 H 1.09000 * 109.47147 * 59.99456 * 23 22 21 46 46 H 1.08006 * 120.79055 * 0.02562 * 25 24 23 47 47 H 1.07999 * 120.42372 * 180.26340 * 26 25 24 48 48 H 1.08003 * 119.62284 * 179.74657 * 27 26 25 49 49 H 1.07995 * 119.61699 * 180.02562 * 29 28 27 50 50 H 1.09004 * 109.58683 * 293.82929 * 30 18 17 51 51 H 1.08994 * 109.70376 * 173.46782 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1492 -0.0077 -2.3757 6 1 1.8927 1.0403 -2.4242 7 6 2.6115 -0.6623 -3.5091 8 7 2.7377 -0.0056 -4.6428 9 14 3.0558 -2.4746 -3.4250 10 1 1.8585 -3.2932 -3.7439 11 1 4.1309 -2.7668 -4.4069 12 1 3.5314 -2.8048 -2.0575 13 6 2.0399 -0.7211 1.2493 14 1 3.1299 -0.7218 1.2496 15 6 1.5301 -0.0001 2.4992 16 6 2.0665 -0.7013 3.7493 17 6 1.5532 -2.1443 3.7812 18 7 1.9148 -2.8022 2.5174 19 6 2.5905 -3.9684 2.5195 20 8 2.8836 -4.5012 1.4702 21 6 2.9817 -4.6101 3.8256 22 8 3.6838 -5.8276 3.5667 23 6 4.1016 -6.5195 4.7451 24 6 4.8271 -7.7818 4.3559 25 6 4.1312 -8.9704 4.1951 26 6 4.8392 -10.1055 3.8320 27 6 6.2072 -10.0179 3.6540 28 7 6.8369 -8.8714 3.8204 29 6 6.1950 -7.7707 4.1608 30 6 1.5263 -2.1644 1.2521 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2490 -1.6318 -1.1524 35 1 3.0611 -0.4630 -5.4347 36 1 0.4403 -0.0203 2.5110 37 1 1.8739 1.0342 2.4873 38 1 3.1563 -0.7032 3.7260 39 1 1.7226 -0.1731 4.6386 40 1 2.0108 -2.6765 4.6151 41 1 0.4693 -2.1441 3.8958 42 1 3.6256 -3.9318 4.3853 43 1 2.0857 -4.8240 4.4082 44 1 4.7683 -5.8808 5.3244 45 1 3.2285 -6.7733 5.3462 46 1 3.0624 -9.0100 4.3453 47 1 4.3291 -11.0474 3.6938 48 1 6.7668 -10.8985 3.3751 49 1 6.7448 -6.8498 4.2876 50 1 0.4401 -2.1658 1.1606 51 1 1.9642 -2.7096 0.4161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732533434.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:30 Heat of formation + Delta-G solvation = -53.347864 kcal Electronic energy + Delta-G solvation = -30506.700190 eV Core-core repulsion = 26405.540073 eV Total energy + Delta-G solvation = -4101.160117 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.45593 -41.12202 -39.50560 -38.39501 -37.05554 -34.73958 -33.96350 -33.33172 -32.74125 -31.94090 -30.29706 -28.93971 -27.15501 -26.31321 -25.63856 -24.57458 -24.45735 -23.01504 -22.34362 -21.05476 -19.87371 -19.63526 -18.55479 -18.00735 -17.71622 -17.65575 -16.93140 -16.85984 -16.67607 -16.33035 -15.98137 -15.77998 -15.51415 -15.17063 -15.01113 -14.76514 -14.60046 -14.44926 -14.33018 -14.07929 -14.01815 -14.00259 -13.56137 -13.28320 -13.14476 -13.04953 -12.98065 -12.65935 -12.46500 -12.33140 -12.03562 -11.90138 -11.86708 -11.75733 -11.41872 -11.25914 -11.02353 -10.89621 -10.80263 -10.73751 -10.43521 -10.07580 -9.64011 -9.34312 -8.08076 -5.37895 0.01635 0.28708 1.28225 1.32240 1.38226 1.52365 1.71894 2.39927 2.63846 3.08857 3.24467 3.44699 3.52557 3.56401 3.82219 3.84988 3.86131 3.88499 4.02100 4.03706 4.04840 4.11788 4.15109 4.26491 4.31690 4.37145 4.40250 4.47697 4.58691 4.60540 4.68746 4.70054 4.80853 4.82050 4.85496 4.90584 5.07449 5.09899 5.12468 5.16959 5.22160 5.24829 5.36927 5.45296 5.51668 5.66822 5.71349 5.75396 6.02036 6.18380 6.40898 6.95728 7.04169 7.13919 7.83220 7.98589 9.13926 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010357 B = 0.002598 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.884927 B =10775.613118 C =12937.234106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 H 0.049 0.951 4 N -0.758 5.758 5 C -0.217 4.217 6 H 0.067 0.933 7 C -0.056 4.056 8 N -0.980 5.980 9 Si 0.937 3.063 10 H -0.280 1.280 11 H -0.293 1.293 12 H -0.274 1.274 13 C -0.095 4.095 14 H 0.049 0.951 15 C -0.110 4.110 16 C -0.130 4.130 17 C 0.097 3.903 18 N -0.606 5.606 19 C 0.496 3.504 20 O -0.589 6.589 21 C 0.054 3.946 22 O -0.399 6.399 23 C 0.105 3.895 24 C -0.155 4.155 25 C -0.063 4.063 26 C -0.175 4.175 27 C 0.087 3.913 28 N -0.521 5.521 29 C 0.099 3.901 30 C 0.119 3.881 31 H 0.086 0.914 32 H 0.030 0.970 33 H 0.049 0.951 34 H 0.359 0.641 35 H 0.257 0.743 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.157 0.843 47 H 0.166 0.834 48 H 0.177 0.823 49 H 0.162 0.838 50 H 0.086 0.914 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.059 -13.554 33.851 36.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.066 3.934 3 H 0.067 0.933 4 N -0.401 5.401 5 C -0.349 4.349 6 H 0.085 0.915 7 C -0.248 4.248 8 N -0.631 5.631 9 Si 0.767 3.233 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.200 1.200 13 C -0.115 4.115 14 H 0.067 0.933 15 C -0.148 4.148 16 C -0.168 4.168 17 C -0.023 4.023 18 N -0.340 5.340 19 C 0.286 3.714 20 O -0.468 6.468 21 C -0.025 4.025 22 O -0.319 6.319 23 C 0.029 3.971 24 C -0.157 4.157 25 C -0.089 4.089 26 C -0.194 4.194 27 C -0.070 4.070 28 N -0.230 5.230 29 C -0.057 4.057 30 C -0.004 4.004 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.192 0.808 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.113 0.887 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.104 0.896 45 H 0.110 0.890 46 H 0.175 0.825 47 H 0.183 0.817 48 H 0.194 0.806 49 H 0.179 0.821 50 H 0.104 0.896 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.958 -13.700 32.880 35.674 hybrid contribution -0.208 -0.922 -1.120 1.466 sum -2.165 -14.623 31.760 35.031 Atomic orbital electron populations 1.22376 0.96700 1.01299 1.01349 1.20494 0.93565 0.95048 0.84329 0.93311 1.43045 1.79942 1.09576 1.07560 1.19089 1.34107 0.94639 0.87031 0.91533 1.25243 1.02960 1.00942 0.95625 1.69830 1.55236 1.37081 1.01000 0.85687 0.77907 0.82640 0.77078 1.20633 1.21939 1.20017 1.21656 0.99489 0.94199 0.96194 0.93292 1.21625 1.01979 0.99258 0.91942 1.21940 1.00981 0.95044 0.98809 1.22260 1.02409 0.93746 0.83894 1.48254 1.55611 1.21476 1.08617 1.21268 0.77283 0.81061 0.91838 1.90753 1.55758 1.64166 1.36148 1.22393 0.99682 0.87487 0.92917 1.88079 1.75689 1.35997 1.32092 1.21466 0.99092 0.89955 0.86552 1.20836 0.95162 0.96312 1.03386 1.21928 1.01593 0.91839 0.93534 1.22519 0.95514 1.00838 1.00567 1.23323 0.93190 0.95948 0.94499 1.67719 1.41973 1.00236 1.13044 1.22963 0.92118 0.96834 0.93786 1.21548 1.00146 0.92898 0.85841 0.89511 0.95087 0.93155 0.80785 0.93386 0.89533 0.90874 0.92370 0.86881 0.86514 0.88704 0.86796 0.86086 0.89609 0.89033 0.82531 0.81689 0.80566 0.82100 0.89637 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.01 8.79 71.98 0.63 -4.38 16 2 C 0.17 6.43 2.72 44.99 0.12 6.55 16 3 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 4 N -0.76 -37.37 4.85 -322.96 -1.57 -38.94 16 5 C -0.22 -12.87 10.41 84.03 0.87 -11.99 16 6 H 0.07 4.20 8.06 -2.91 -0.02 4.17 16 7 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 8 N -0.98 -65.32 13.97 21.65 0.30 -65.02 16 9 Si 0.94 51.11 27.73 68.60 1.90 53.01 16 10 H -0.28 -14.93 7.11 99.48 0.71 -14.23 16 11 H -0.29 -15.93 7.11 99.48 0.71 -15.23 16 12 H -0.27 -14.83 6.52 99.48 0.65 -14.18 16 13 C -0.10 -2.78 2.33 -10.72 -0.02 -2.81 16 14 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 15 C -0.11 -1.96 4.78 30.62 0.15 -1.82 16 16 C -0.13 -1.46 6.08 30.67 0.19 -1.27 16 17 C 0.10 1.03 6.34 86.35 0.55 1.57 16 18 N -0.61 -13.98 2.97 -818.73 -2.43 -16.41 16 19 C 0.50 13.90 7.77 87.65 0.68 14.59 16 20 O -0.59 -24.93 15.92 16.00 0.25 -24.68 16 21 C 0.05 0.85 4.76 71.23 0.34 1.18 16 22 O -0.40 -8.88 9.86 -129.94 -1.28 -10.16 16 23 C 0.11 1.35 6.09 71.24 0.43 1.78 16 24 C -0.15 -2.70 5.53 -19.77 -0.11 -2.81 16 25 C -0.06 -0.94 9.86 22.47 0.22 -0.72 16 26 C -0.17 -2.42 10.11 22.36 0.23 -2.20 16 27 C 0.09 1.49 11.18 84.69 0.95 2.44 16 28 N -0.52 -11.79 10.36 -195.84 -2.03 -13.82 16 29 C 0.10 2.04 10.86 84.67 0.92 2.96 16 30 C 0.12 3.62 5.21 86.36 0.45 4.07 16 31 H 0.09 1.99 6.46 -2.39 -0.02 1.98 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.56 6.32 -2.39 -0.02 1.55 16 34 H 0.36 18.21 4.03 -92.71 -0.37 17.84 16 35 H 0.26 16.42 8.31 -92.71 -0.77 15.64 16 36 H 0.09 1.29 6.50 -2.38 -0.02 1.27 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.12 0.40 5.94 -2.39 -0.01 0.38 16 41 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.11 1.00 7.69 -2.39 -0.02 0.99 16 43 H 0.12 0.87 7.94 -2.39 -0.02 0.85 16 44 H 0.09 0.69 8.09 -2.39 -0.02 0.67 16 45 H 0.09 0.61 8.09 -2.39 -0.02 0.59 16 46 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 47 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 48 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 49 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 50 H 0.09 2.37 6.18 -2.39 -0.01 2.35 16 51 H 0.04 1.76 5.60 -2.39 -0.01 1.75 16 Total: -1.00 -92.85 403.11 2.71 -90.14 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.50 Total: 21.74 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 7.06 Total: 4.12 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -5.73 Total: -134.19 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -1.03 Total: -34.83 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 1.90 Total: 53.01 kcal Total: -92.85 2.71 -90.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732533434.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.793 kcal (2) G-P(sol) polarization free energy of solvation -92.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds