Wall clock time and date at job start Wed Apr 1 2020 05:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47629 * 2 1 4 4 C 1.53003 * 109.46881 * 239.99746 * 2 1 3 5 5 N 1.46501 * 109.46996 * 185.00003 * 4 2 1 6 6 C 1.46504 * 120.00016 * 269.99933 * 5 4 2 7 7 C 1.34780 * 120.00039 * 90.00059 * 5 4 2 8 8 O 1.21281 * 119.99998 * 359.97438 * 7 5 4 9 9 C 1.50701 * 120.00013 * 179.97438 * 7 5 4 10 10 H 1.08997 * 109.47129 * 59.99670 * 9 7 5 11 11 C 1.52996 * 109.47113 * 300.00039 * 9 7 5 12 12 C 1.50700 * 109.47038 * 179.97438 * 9 7 5 13 13 C 1.38231 * 119.99825 * 59.86739 * 12 9 7 14 14 C 1.38243 * 120.00070 * 180.02562 * 13 12 9 15 15 C 1.38235 * 119.99602 * 0.07188 * 14 13 12 16 16 C 1.38230 * 120.00326 * 359.97438 * 15 14 13 17 17 C 1.38234 * 120.00292 * 239.99877 * 12 9 7 18 18 N 1.46904 * 109.47458 * 119.99984 * 2 1 3 19 19 C 1.46903 * 110.99849 * 275.00114 * 18 2 1 20 20 C 1.50703 * 109.47005 * 179.97438 * 19 18 2 21 21 O 1.21287 * 119.99821 * 0.02562 * 20 19 18 22 22 N 1.34773 * 119.99885 * 179.97438 * 20 19 18 23 23 C 1.37094 * 120.00193 * 179.97438 * 22 20 19 24 24 H 1.08001 * 119.99812 * 0.02562 * 23 22 20 25 25 C 1.38949 * 120.00398 * 180.02562 * 23 22 20 26 26 N 1.31412 * 119.99646 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00277 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47168 * 59.99793 * 27 25 23 29 29 H 1.48501 * 109.47116 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.46683 * 299.99957 * 27 25 23 31 31 H 1.09000 * 109.47083 * 299.99982 * 1 2 3 32 32 H 1.08992 * 109.47371 * 60.00050 * 1 2 3 33 33 H 1.09003 * 109.47199 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47000 * 65.00101 * 4 2 1 35 35 H 1.09003 * 109.47008 * 304.99540 * 4 2 1 36 36 H 1.08995 * 109.46831 * 269.99849 * 6 5 4 37 37 H 1.08996 * 109.46733 * 30.00357 * 6 5 4 38 38 H 1.09007 * 109.46921 * 150.00219 * 6 5 4 39 39 H 1.09003 * 109.47481 * 299.99912 * 11 9 7 40 40 H 1.08996 * 109.47589 * 60.00082 * 11 9 7 41 41 H 1.08999 * 109.47573 * 180.02562 * 11 9 7 42 42 H 1.08001 * 120.00367 * 0.10906 * 13 12 9 43 43 H 1.08000 * 119.99728 * 180.34119 * 14 13 12 44 44 H 1.08000 * 119.99297 * 179.97438 * 15 14 13 45 45 H 1.08001 * 120.00350 * 179.97438 * 16 15 14 46 46 H 1.08007 * 119.99474 * 359.97438 * 17 12 9 47 47 H 1.00895 * 111.00312 * 151.04308 * 18 2 1 48 48 H 1.09000 * 109.46549 * 299.99394 * 19 18 2 49 49 H 1.08993 * 109.47211 * 59.99779 * 19 18 2 50 50 H 0.97001 * 120.00127 * 0.02562 * 22 20 19 51 51 H 0.97003 * 120.00113 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.3343 0.2339 -1.7614 7 6 4.0757 -1.8988 -0.6116 8 8 3.3850 -2.7764 -0.1386 9 6 5.5776 -2.0072 -0.5517 10 1 5.9812 -1.1600 0.0027 11 6 6.1461 -2.0044 -1.9722 12 6 5.9615 -3.2893 0.1411 13 6 5.5571 -4.5042 -0.3798 14 6 5.9088 -5.6803 0.2559 15 6 6.6635 -5.6413 1.4134 16 6 7.0670 -4.4263 1.9348 17 6 6.7156 -3.2503 1.2989 18 7 2.0197 -0.6925 1.1994 19 6 2.0825 0.2226 2.3469 20 6 2.5874 -0.5218 3.5560 21 8 2.8679 -1.6986 3.4702 22 7 2.7284 0.1205 4.7325 23 6 3.1872 -0.5567 5.8326 24 1 3.4362 -1.6049 5.7564 25 6 3.3320 0.1053 7.0456 26 7 3.0296 1.3808 7.1382 27 14 3.9579 -0.8173 8.5444 28 1 5.3139 -1.3542 8.2646 29 1 4.0208 0.1076 9.7045 30 1 3.0359 -1.9391 8.8557 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.7515 -0.1584 -2.1370 35 1 1.6053 -1.7199 -1.2950 36 1 4.5424 0.0091 -2.8074 37 1 3.8090 1.1865 -1.6919 38 1 5.2722 0.2951 -1.2093 39 1 5.7425 -2.8516 -2.5268 40 1 5.8685 -1.0769 -2.4729 41 1 7.2323 -2.0833 -1.9290 42 1 4.9676 -4.5347 -1.2843 43 1 5.5975 -6.6297 -0.1541 44 1 6.9379 -6.5601 1.9103 45 1 7.6564 -4.3958 2.8394 46 1 7.0300 -2.3010 1.7068 47 1 2.9173 -1.1205 1.0287 48 1 2.7589 1.0462 2.1181 49 1 1.0872 0.6163 2.5525 50 1 2.5044 1.0619 4.8010 51 1 3.1310 1.8431 7.9849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734351359.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:07 Heat of formation + Delta-G solvation = -58.562838 kcal Electronic energy + Delta-G solvation = -31814.611364 eV Core-core repulsion = 27713.225108 eV Total energy + Delta-G solvation = -4101.386255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.70147 -40.23760 -39.76597 -37.82641 -36.32238 -35.90984 -34.91414 -33.31011 -32.17434 -31.79304 -30.35309 -28.33870 -27.97240 -27.27084 -25.80370 -25.07468 -23.49991 -22.65341 -21.33870 -21.16306 -20.13279 -19.90113 -18.17477 -17.90574 -17.79569 -17.37581 -16.99035 -16.52321 -16.28179 -16.22195 -15.88627 -15.70431 -15.54882 -14.99455 -14.91821 -14.62434 -14.24796 -14.19502 -14.14916 -13.86927 -13.66691 -13.49431 -13.44152 -13.34465 -13.11876 -12.97164 -12.90993 -12.65926 -12.62279 -12.47329 -12.40610 -12.34872 -12.13398 -11.96366 -11.85712 -11.76925 -11.53278 -10.67424 -10.35662 -10.03647 -9.78204 -9.64554 -9.59376 -9.25009 -8.48567 -5.97311 0.43443 0.53090 1.36763 1.38264 1.49625 1.64693 2.01488 2.03002 2.27316 2.89776 2.95028 3.17813 3.49368 3.50811 3.68358 3.92683 3.95606 4.09745 4.18588 4.21032 4.22220 4.26727 4.27809 4.33477 4.39731 4.45297 4.51751 4.55225 4.60292 4.67253 4.68948 4.78304 4.86185 4.91590 4.94789 4.96576 5.07613 5.11896 5.14854 5.25547 5.36993 5.38542 5.55422 5.60430 5.61503 5.67787 5.91049 6.12076 6.17707 6.35089 6.50956 6.59040 7.10848 7.22626 7.53065 8.10640 8.68818 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008065 B = 0.003921 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3471.082175 B = 7138.496117 C = 9662.782526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.063 3.937 3 H 0.059 0.941 4 C 0.116 3.884 5 N -0.620 5.620 6 C 0.064 3.936 7 C 0.503 3.497 8 O -0.550 6.550 9 C -0.068 4.068 10 H 0.107 0.893 11 C -0.141 4.141 12 C -0.078 4.078 13 C -0.098 4.098 14 C -0.133 4.133 15 C -0.129 4.129 16 C -0.136 4.136 17 C -0.130 4.130 18 N -0.683 5.683 19 C 0.065 3.935 20 C 0.433 3.567 21 O -0.619 6.619 22 N -0.571 5.571 23 C -0.334 4.334 24 H 0.073 0.927 25 C -0.010 4.010 26 N -0.919 5.919 27 Si 0.991 3.009 28 H -0.271 1.271 29 H -0.266 1.266 30 H -0.275 1.275 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.126 0.874 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.119 0.881 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.131 0.869 46 H 0.120 0.880 47 H 0.344 0.656 48 H 0.060 0.940 49 H 0.100 0.900 50 H 0.396 0.604 51 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.916 0.787 -23.203 23.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.047 4.047 3 H 0.077 0.923 4 C -0.007 4.007 5 N -0.354 5.354 6 C -0.078 4.078 7 C 0.291 3.709 8 O -0.426 6.426 9 C -0.089 4.089 10 H 0.125 0.875 11 C -0.198 4.198 12 C -0.078 4.078 13 C -0.116 4.116 14 C -0.151 4.151 15 C -0.147 4.147 16 C -0.154 4.154 17 C -0.148 4.148 18 N -0.322 5.322 19 C -0.068 4.068 20 C 0.221 3.779 21 O -0.505 6.505 22 N -0.209 5.209 23 C -0.464 4.464 24 H 0.091 0.909 25 C -0.209 4.209 26 N -0.560 5.560 27 Si 0.814 3.186 28 H -0.196 1.196 29 H -0.190 1.190 30 H -0.200 1.200 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.144 0.856 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.137 0.863 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.149 0.851 46 H 0.138 0.862 47 H 0.168 0.832 48 H 0.077 0.923 49 H 0.118 0.882 50 H 0.230 0.770 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.150 -0.566 -22.714 23.298 hybrid contribution 0.686 0.500 1.265 1.523 sum 5.835 -0.067 -21.449 22.229 Atomic orbital electron populations 1.21732 0.93231 1.01822 1.02429 1.22135 0.97010 0.96322 0.89243 0.92302 1.21772 0.79128 1.01965 0.97838 1.47991 1.07220 1.21547 1.58667 1.22323 0.95583 0.90074 0.99787 1.21016 0.91090 0.81729 0.77032 1.90828 1.65360 1.40663 1.45771 1.20318 0.91334 0.96690 1.00566 0.87548 1.22036 1.02096 1.04402 0.91283 1.19522 0.97976 0.94611 0.95727 1.20985 0.98110 0.92259 1.00293 1.21407 0.98619 0.98804 0.96303 1.21422 0.98436 0.98419 0.96450 1.21366 1.00979 0.92884 1.00157 1.21236 0.99327 0.98959 0.95274 1.60201 1.36001 1.32078 1.03909 1.21580 1.01761 0.93650 0.89769 1.20933 0.83385 0.88067 0.85562 1.90546 1.56150 1.18266 1.85503 1.41890 1.58503 1.12433 1.08081 1.19572 1.42355 0.95747 0.88683 0.90915 1.25999 0.97159 0.96631 1.01149 1.69662 1.48529 1.09568 1.28226 0.85032 0.78718 0.77884 0.76953 1.19648 1.18970 1.20002 0.93333 0.89134 0.93661 0.85570 0.91602 0.89288 0.89319 0.90319 0.92414 0.88224 0.90276 0.86319 0.84230 0.84102 0.85069 0.86155 0.83217 0.92257 0.88203 0.77023 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.41 71.98 0.68 -2.34 16 2 C 0.06 1.58 2.95 44.91 0.13 1.72 16 3 H 0.06 1.26 7.80 -2.39 -0.02 1.24 16 4 C 0.12 2.42 5.20 86.38 0.45 2.86 16 5 N -0.62 -12.88 2.66 -846.73 -2.25 -15.14 16 6 C 0.06 0.68 8.80 127.77 1.12 1.81 16 7 C 0.50 14.51 5.32 87.66 0.47 14.98 16 8 O -0.55 -21.95 13.26 -3.03 -0.04 -21.99 16 9 C -0.07 -1.62 2.10 -12.29 -0.03 -1.64 16 10 H 0.11 2.36 7.13 -2.39 -0.02 2.35 16 11 C -0.14 -2.09 8.64 71.98 0.62 -1.47 16 12 C -0.08 -2.33 4.40 -19.87 -0.09 -2.42 16 13 C -0.10 -2.90 7.93 22.27 0.18 -2.73 16 14 C -0.13 -3.69 10.05 22.27 0.22 -3.46 16 15 C -0.13 -3.58 10.05 22.27 0.22 -3.35 16 16 C -0.14 -4.09 10.05 22.27 0.22 -3.86 16 17 C -0.13 -4.10 9.67 22.27 0.22 -3.88 16 18 N -0.68 -25.73 5.82 -495.57 -2.88 -28.61 16 19 C 0.06 2.54 5.97 85.56 0.51 3.05 16 20 C 0.43 22.83 7.82 87.66 0.69 23.51 16 21 O -0.62 -38.53 15.78 -3.05 -0.05 -38.58 16 22 N -0.57 -31.27 5.29 -306.99 -1.62 -32.90 16 23 C -0.33 -20.01 9.68 84.04 0.81 -19.19 16 24 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 25 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 26 N -0.92 -50.83 13.05 21.66 0.28 -50.55 16 27 Si 0.99 44.53 29.55 68.60 2.03 46.56 16 28 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 29 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 30 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 31 H 0.05 1.18 7.45 -2.39 -0.02 1.16 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.13 1.49 8.07 -2.39 -0.02 1.47 16 35 H 0.07 1.77 7.42 -2.39 -0.02 1.75 16 36 H 0.09 0.51 6.95 -2.39 -0.02 0.49 16 37 H 0.09 0.69 8.07 -2.39 -0.02 0.67 16 38 H 0.08 0.81 6.01 -2.38 -0.01 0.80 16 39 H 0.06 0.92 7.40 -2.39 -0.02 0.90 16 40 H 0.10 0.91 4.53 -2.39 -0.01 0.89 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.12 3.28 7.52 -2.91 -0.02 3.26 16 43 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 44 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 45 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 46 H 0.12 3.58 7.95 -2.91 -0.02 3.55 16 47 H 0.34 14.24 4.17 -89.70 -0.37 13.87 16 48 H 0.06 2.03 8.06 -2.39 -0.02 2.01 16 49 H 0.10 3.55 7.44 -2.39 -0.02 3.54 16 50 H 0.40 20.39 7.90 -92.71 -0.73 19.66 16 51 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -84.23 408.19 2.20 -82.03 By element: Atomic # 1 Polarization: 55.81 SS G_CDS: -0.16 Total: 55.65 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 6.90 Total: 3.52 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -6.48 Total: -127.19 kcal Atomic # 8 Polarization: -60.48 SS G_CDS: -0.09 Total: -60.57 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -84.23 2.20 -82.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734351359.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.467 kcal (2) G-P(sol) polarization free energy of solvation -84.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds