Wall clock time and date at job start Wed Apr 1 2020 04:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46610 * 2 1 4 4 N 1.46497 * 109.47298 * 240.00100 * 2 1 3 5 5 C 1.36937 * 120.00454 * 84.99807 * 4 2 1 6 6 H 1.08003 * 119.99428 * 0.02562 * 5 4 2 7 7 C 1.38804 * 120.00177 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00209 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99992 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47086 * 90.00464 * 9 7 5 11 11 H 1.48504 * 109.47090 * 209.99982 * 9 7 5 12 12 H 1.48494 * 109.47174 * 330.00330 * 9 7 5 13 13 C 1.52996 * 109.46660 * 119.99937 * 2 1 3 14 14 H 1.08998 * 109.70268 * 302.58253 * 13 2 1 15 15 C 1.53623 * 109.66843 * 63.18259 * 13 2 1 16 16 C 1.53040 * 109.24372 * 174.54808 * 15 13 2 17 17 C 1.53035 * 109.53626 * 298.50794 * 16 15 13 18 18 C 1.53194 * 109.31473 * 61.36696 * 17 16 15 19 19 N 1.46923 * 108.77309 * 305.36725 * 18 17 16 20 20 C 1.34780 * 120.62894 * 233.57947 * 19 18 17 21 21 O 1.21582 * 120.00596 * 186.01454 * 20 19 18 22 22 C 1.47516 * 119.99622 * 6.02249 * 20 19 18 23 23 O 1.35181 * 127.15733 * 354.03583 * 22 20 19 24 24 N 1.21477 * 111.55564 * 179.97438 * 23 22 20 25 25 C 1.29061 * 111.68455 * 359.90052 * 24 23 22 26 26 C 1.35251 * 127.14916 * 174.04247 * 22 20 19 27 27 C 1.50106 * 131.34070 * 0.23697 * 26 22 20 28 28 C 1.53578 * 108.01916 * 163.82538 * 27 26 22 29 29 C 1.53003 * 109.75577 * 50.06716 * 28 27 26 30 30 C 1.50652 * 130.33476 * 180.44932 * 25 24 23 31 31 H 1.09007 * 109.46537 * 54.95347 * 1 2 3 32 32 H 1.08992 * 109.47120 * 174.94627 * 1 2 3 33 33 H 1.08995 * 109.47372 * 294.95478 * 1 2 3 34 34 H 0.97005 * 119.99592 * 265.00507 * 4 2 1 35 35 H 0.97000 * 120.00594 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.63631 * 54.55076 * 15 13 2 37 37 H 1.09003 * 109.45328 * 294.43133 * 15 13 2 38 38 H 1.09000 * 109.45637 * 178.48711 * 16 15 13 39 39 H 1.09000 * 109.45096 * 58.52130 * 16 15 13 40 40 H 1.08997 * 109.50032 * 301.41731 * 17 16 15 41 41 H 1.09003 * 109.52611 * 181.33230 * 17 16 15 42 42 H 1.09001 * 109.59259 * 185.57388 * 18 17 16 43 43 H 1.09005 * 109.58222 * 65.14765 * 18 17 16 44 44 H 1.09004 * 109.75217 * 44.19555 * 27 26 22 45 45 H 1.08998 * 109.75007 * 283.45161 * 27 26 22 46 46 H 1.08996 * 109.41752 * 170.14314 * 28 27 26 47 47 H 1.09007 * 109.41402 * 290.00476 * 28 27 26 48 48 H 1.09003 * 109.37156 * 48.42075 * 29 28 27 49 49 H 1.08994 * 109.37906 * 168.07974 * 29 28 27 50 50 H 1.09001 * 109.74269 * 282.71485 * 30 25 24 51 51 H 1.08999 * 109.73838 * 43.42826 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3758 6 1 1.8927 1.0405 -2.4241 7 6 2.6125 -0.6617 -3.5089 8 7 2.9255 -1.9388 -3.4498 9 14 2.7915 0.2702 -5.1179 10 1 4.1539 0.8553 -5.2020 11 1 2.5817 -0.6611 -6.2554 12 1 1.7816 1.3573 -5.1753 13 6 2.0399 -0.7212 1.2492 14 1 1.6414 -0.2377 2.1411 15 6 1.5969 -2.1918 1.2143 16 6 2.2243 -2.9358 2.3954 17 6 3.7494 -2.8897 2.2775 18 6 4.2171 -1.4316 2.3211 19 7 3.5082 -0.6762 1.2792 20 6 4.1916 0.0488 0.3715 21 8 3.5939 0.7557 -0.4167 22 6 5.6649 -0.0156 0.3342 23 8 6.4763 -0.6584 1.2035 24 7 7.6460 -0.5257 0.9038 25 6 7.7873 0.1896 -0.1611 26 6 6.4846 0.5566 -0.5768 27 6 6.1912 1.4026 -1.7815 28 6 7.4936 2.1000 -2.2009 29 6 8.6216 1.0713 -2.3023 30 6 9.0335 0.6046 -0.8989 31 1 -0.3633 0.5902 -0.8414 32 1 -0.3633 -1.0236 -0.0905 33 1 -0.3634 0.4335 0.9317 34 1 2.2491 -1.6318 -1.1525 35 1 3.2489 -2.3961 -4.2417 36 1 1.9229 -2.6504 0.2808 37 1 0.5106 -2.2455 1.2861 38 1 1.8907 -3.9735 2.3894 39 1 1.9176 -2.4612 3.3275 40 1 4.0552 -3.3417 1.3340 41 1 4.1956 -3.4398 3.1060 42 1 5.2908 -1.3865 2.1385 43 1 3.9924 -1.0049 3.2986 44 1 5.4372 2.1494 -1.5324 45 1 5.8320 0.7728 -2.5953 46 1 7.3523 2.5795 -3.1695 47 1 7.7564 2.8537 -1.4585 48 1 8.2792 0.2155 -2.8842 49 1 9.4802 1.5237 -2.7985 50 1 9.5223 1.4204 -0.3663 51 1 9.7136 -0.2435 -0.9788 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752143406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:25 Heat of formation + Delta-G solvation = 70.994370 kcal Electronic energy + Delta-G solvation = -33929.744940 eV Core-core repulsion = 29833.976707 eV Total energy + Delta-G solvation = -4095.768233 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.65703 -40.08760 -37.67601 -36.85407 -35.25530 -32.90699 -32.32442 -32.15117 -31.96010 -29.76520 -29.43738 -28.04247 -25.64188 -24.53682 -23.95287 -23.39127 -22.94969 -22.25279 -20.47372 -19.99168 -19.76662 -18.69389 -17.42887 -17.08768 -16.79092 -15.87315 -15.65027 -14.93348 -14.61617 -14.47646 -14.35819 -14.08355 -13.91850 -13.83584 -13.59060 -13.45627 -13.15775 -12.97874 -12.66051 -12.45062 -12.27885 -12.21431 -12.07172 -11.82021 -11.56178 -11.38778 -11.12521 -10.87660 -10.81437 -10.75747 -10.70715 -10.63578 -10.54891 -10.38497 -10.22433 -10.13907 -9.82388 -9.69177 -9.39330 -9.05014 -8.75128 -8.43729 -8.04524 -6.64793 -5.54127 -2.76958 1.30253 2.35895 2.93848 3.48225 3.51933 3.58450 3.59677 3.75019 4.07032 4.57628 4.77097 4.87853 4.90568 4.96810 5.07736 5.11532 5.19072 5.24125 5.33161 5.38622 5.48866 5.54238 5.56133 5.63439 5.69511 5.72457 5.80107 5.83987 5.87196 5.89307 6.03808 6.09843 6.12401 6.12807 6.16467 6.18555 6.28614 6.32943 6.35412 6.42649 6.43750 6.49774 6.59757 6.64956 6.85052 6.99357 7.04436 7.36473 7.81799 7.95944 8.36357 8.63696 8.77998 9.75514 10.32413 10.68767 11.69779 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008203 B = 0.006511 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3412.439443 B = 4299.119134 C = 6802.483964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.163 3.837 3 H 0.087 0.913 4 N -0.709 5.709 5 C -0.180 4.180 6 H 0.066 0.934 7 C -0.027 4.027 8 N -0.944 5.944 9 Si 0.894 3.106 10 H -0.294 1.294 11 H -0.298 1.298 12 H -0.286 1.286 13 C 0.148 3.852 14 H 0.067 0.933 15 C -0.132 4.132 16 C -0.117 4.117 17 C -0.134 4.134 18 C 0.098 3.902 19 N -0.602 5.602 20 C 0.592 3.408 21 O -0.429 6.429 22 C -0.064 4.064 23 O 0.085 5.915 24 N -0.352 5.352 25 C 0.016 3.984 26 C -0.120 4.120 27 C -0.048 4.048 28 C -0.120 4.120 29 C -0.120 4.120 30 C -0.037 4.037 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.033 0.967 34 H 0.379 0.621 35 H 0.248 0.752 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.084 0.916 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.932 3.143 11.911 14.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.054 3.946 3 H 0.104 0.896 4 N -0.351 5.351 5 C -0.312 4.312 6 H 0.084 0.916 7 C -0.220 4.220 8 N -0.596 5.596 9 Si 0.727 3.273 10 H -0.222 1.222 11 H -0.225 1.225 12 H -0.212 1.212 13 C 0.045 3.955 14 H 0.085 0.915 15 C -0.171 4.171 16 C -0.155 4.155 17 C -0.172 4.172 18 C -0.025 4.025 19 N -0.338 5.338 20 C 0.375 3.625 21 O -0.298 6.298 22 C -0.127 4.127 23 O 0.022 5.978 24 N -0.060 5.060 25 C -0.145 4.145 26 C -0.124 4.124 27 C -0.086 4.086 28 C -0.157 4.157 29 C -0.158 4.158 30 C -0.074 4.074 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.214 0.786 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.113 0.887 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.091 0.909 50 H 0.103 0.897 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.409 3.090 12.128 14.544 hybrid contribution -0.075 0.137 -1.436 1.444 sum 7.334 3.227 10.692 13.361 Atomic orbital electron populations 1.22564 0.99868 1.00943 0.99475 1.20781 0.90572 0.98011 0.85271 0.89597 1.42441 1.77569 1.09815 1.05245 1.19083 1.32506 0.93195 0.86392 0.91616 1.24555 1.04030 0.95927 0.97491 1.69639 1.53234 1.08528 1.28165 0.86343 0.77638 0.78553 0.84735 1.22218 1.22456 1.21194 1.21738 0.77782 0.96240 0.99747 0.91485 1.22061 1.00393 0.95284 0.99318 1.21516 0.95098 1.00365 0.98491 1.21895 0.96446 0.96223 1.02645 1.22075 0.97967 0.91634 0.90864 1.47706 1.06700 1.48900 1.30460 1.16639 0.81788 0.82590 0.81470 1.91026 1.63947 1.37980 1.36870 1.23978 0.94208 1.00545 0.94007 1.85234 1.10821 1.57219 1.44537 1.73316 0.98653 1.17737 1.16324 1.23317 0.97526 0.99099 0.94525 1.21032 0.90999 1.01350 0.99060 1.20097 0.97404 0.97778 0.93283 1.21666 0.94437 0.97732 1.01877 1.21637 0.98849 0.99920 0.95390 1.20084 0.91459 1.01317 0.94585 0.92830 0.93522 0.94839 0.78622 0.94232 0.90209 0.90922 0.92063 0.92325 0.91187 0.91257 0.88338 0.91690 0.88955 0.88678 0.90903 0.91891 0.91082 0.90868 0.89723 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 9.08 37.16 0.34 -2.65 16 2 C 0.16 3.22 1.89 -67.93 -0.13 3.09 16 3 H 0.09 1.86 5.85 -52.26 -0.31 1.55 16 4 N -0.71 -17.13 3.49 -53.43 -0.19 -17.31 16 5 C -0.18 -4.91 8.10 -15.06 -0.12 -5.04 16 6 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 7 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 8 N -0.94 -28.54 13.06 55.49 0.72 -27.81 16 9 Si 0.89 22.87 29.55 -169.99 -5.02 17.85 16 10 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 11 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 C 0.15 2.40 2.76 -67.38 -0.19 2.22 16 14 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 15 C -0.13 -2.01 4.83 -26.39 -0.13 -2.13 16 16 C -0.12 -1.43 5.88 -26.69 -0.16 -1.59 16 17 C -0.13 -1.69 6.08 -26.61 -0.16 -1.85 16 18 C 0.10 1.33 6.34 -3.71 -0.02 1.30 16 19 N -0.60 -10.02 2.96 -166.19 -0.49 -10.51 16 20 C 0.59 11.51 7.12 -12.48 -0.09 11.42 16 21 O -0.43 -9.50 9.05 5.29 0.05 -9.46 16 22 C -0.06 -1.17 6.97 -36.87 -0.26 -1.43 16 23 O 0.08 1.43 7.81 13.84 0.11 1.54 16 24 N -0.35 -5.90 12.03 33.15 0.40 -5.51 16 25 C 0.02 0.26 7.21 -82.51 -0.60 -0.33 16 26 C -0.12 -2.12 6.02 -104.70 -0.63 -2.75 16 27 C -0.05 -0.83 5.64 -27.87 -0.16 -0.99 16 28 C -0.12 -1.54 5.87 -26.43 -0.16 -1.70 16 29 C -0.12 -1.40 5.84 -26.46 -0.15 -1.56 16 30 C -0.04 -0.44 6.32 -27.63 -0.17 -0.61 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.83 6.92 -51.93 -0.36 0.47 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.38 9.88 5.82 -40.82 -0.24 9.64 16 35 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.08 1.49 6.22 -51.93 -0.32 1.17 16 37 H 0.07 1.03 6.95 -51.93 -0.36 0.67 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.10 1.41 3.81 -54.67 -0.21 1.20 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 1.64 7.69 -51.93 -0.40 1.24 16 45 H 0.10 1.92 8.14 -51.93 -0.42 1.49 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.06 0.74 8.10 -51.92 -0.42 0.31 16 48 H 0.07 0.94 8.10 -51.93 -0.42 0.51 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 382.20 15.07 5.76 5.76 Total: -1.00 -31.17 382.20 -9.62 -40.79 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -8.08 Total: 10.13 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.88 Total: -5.46 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.45 Total: -61.14 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.16 Total: -7.91 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.17 -9.62 -40.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752143406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.780 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds