Wall clock time and date at job start Wed Apr 1 2020 04:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46610 * 2 1 4 4 N 1.46497 * 109.47298 * 240.00100 * 2 1 3 5 5 C 1.36937 * 120.00454 * 84.99807 * 4 2 1 6 6 H 1.08003 * 119.99428 * 0.02562 * 5 4 2 7 7 C 1.38804 * 120.00177 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00209 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99992 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47086 * 90.00464 * 9 7 5 11 11 H 1.48504 * 109.47090 * 209.99982 * 9 7 5 12 12 H 1.48494 * 109.47174 * 330.00330 * 9 7 5 13 13 C 1.52996 * 109.46660 * 119.99937 * 2 1 3 14 14 H 1.08998 * 109.70268 * 302.58253 * 13 2 1 15 15 C 1.53623 * 109.66843 * 63.18259 * 13 2 1 16 16 C 1.53040 * 109.24372 * 174.54808 * 15 13 2 17 17 C 1.53035 * 109.53626 * 298.50794 * 16 15 13 18 18 C 1.53194 * 109.31473 * 61.36696 * 17 16 15 19 19 N 1.46923 * 108.77309 * 305.36725 * 18 17 16 20 20 C 1.34780 * 120.62894 * 233.57947 * 19 18 17 21 21 O 1.21582 * 120.00596 * 186.01454 * 20 19 18 22 22 C 1.47516 * 119.99622 * 6.02249 * 20 19 18 23 23 O 1.35181 * 127.15733 * 354.03583 * 22 20 19 24 24 N 1.21477 * 111.55564 * 179.97438 * 23 22 20 25 25 C 1.29061 * 111.68455 * 359.90052 * 24 23 22 26 26 C 1.35251 * 127.14916 * 174.04247 * 22 20 19 27 27 C 1.50106 * 131.34070 * 0.23697 * 26 22 20 28 28 C 1.53578 * 108.01916 * 163.82538 * 27 26 22 29 29 C 1.53003 * 109.75577 * 50.06716 * 28 27 26 30 30 C 1.50652 * 130.33476 * 180.44932 * 25 24 23 31 31 H 1.09007 * 109.46537 * 54.95347 * 1 2 3 32 32 H 1.08992 * 109.47120 * 174.94627 * 1 2 3 33 33 H 1.08995 * 109.47372 * 294.95478 * 1 2 3 34 34 H 0.97005 * 119.99592 * 265.00507 * 4 2 1 35 35 H 0.97000 * 120.00594 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.63631 * 54.55076 * 15 13 2 37 37 H 1.09003 * 109.45328 * 294.43133 * 15 13 2 38 38 H 1.09000 * 109.45637 * 178.48711 * 16 15 13 39 39 H 1.09000 * 109.45096 * 58.52130 * 16 15 13 40 40 H 1.08997 * 109.50032 * 301.41731 * 17 16 15 41 41 H 1.09003 * 109.52611 * 181.33230 * 17 16 15 42 42 H 1.09001 * 109.59259 * 185.57388 * 18 17 16 43 43 H 1.09005 * 109.58222 * 65.14765 * 18 17 16 44 44 H 1.09004 * 109.75217 * 44.19555 * 27 26 22 45 45 H 1.08998 * 109.75007 * 283.45161 * 27 26 22 46 46 H 1.08996 * 109.41752 * 170.14314 * 28 27 26 47 47 H 1.09007 * 109.41402 * 290.00476 * 28 27 26 48 48 H 1.09003 * 109.37156 * 48.42075 * 29 28 27 49 49 H 1.08994 * 109.37906 * 168.07974 * 29 28 27 50 50 H 1.09001 * 109.74269 * 282.71485 * 30 25 24 51 51 H 1.08999 * 109.73838 * 43.42826 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3758 6 1 1.8927 1.0405 -2.4241 7 6 2.6125 -0.6617 -3.5089 8 7 2.9255 -1.9388 -3.4498 9 14 2.7915 0.2702 -5.1179 10 1 4.1539 0.8553 -5.2020 11 1 2.5817 -0.6611 -6.2554 12 1 1.7816 1.3573 -5.1753 13 6 2.0399 -0.7212 1.2492 14 1 1.6414 -0.2377 2.1411 15 6 1.5969 -2.1918 1.2143 16 6 2.2243 -2.9358 2.3954 17 6 3.7494 -2.8897 2.2775 18 6 4.2171 -1.4316 2.3211 19 7 3.5082 -0.6762 1.2792 20 6 4.1916 0.0488 0.3715 21 8 3.5939 0.7557 -0.4167 22 6 5.6649 -0.0156 0.3342 23 8 6.4763 -0.6584 1.2035 24 7 7.6460 -0.5257 0.9038 25 6 7.7873 0.1896 -0.1611 26 6 6.4846 0.5566 -0.5768 27 6 6.1912 1.4026 -1.7815 28 6 7.4936 2.1000 -2.2009 29 6 8.6216 1.0713 -2.3023 30 6 9.0335 0.6046 -0.8989 31 1 -0.3633 0.5902 -0.8414 32 1 -0.3633 -1.0236 -0.0905 33 1 -0.3634 0.4335 0.9317 34 1 2.2491 -1.6318 -1.1525 35 1 3.2489 -2.3961 -4.2417 36 1 1.9229 -2.6504 0.2808 37 1 0.5106 -2.2455 1.2861 38 1 1.8907 -3.9735 2.3894 39 1 1.9176 -2.4612 3.3275 40 1 4.0552 -3.3417 1.3340 41 1 4.1956 -3.4398 3.1060 42 1 5.2908 -1.3865 2.1385 43 1 3.9924 -1.0049 3.2986 44 1 5.4372 2.1494 -1.5324 45 1 5.8320 0.7728 -2.5953 46 1 7.3523 2.5795 -3.1695 47 1 7.7564 2.8537 -1.4585 48 1 8.2792 0.2155 -2.8842 49 1 9.4802 1.5237 -2.7985 50 1 9.5223 1.4204 -0.3663 51 1 9.7136 -0.2435 -0.9788 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752143406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:24 Heat of formation + Delta-G solvation = 52.825559 kcal Electronic energy + Delta-G solvation = -33930.532799 eV Core-core repulsion = 29833.976707 eV Total energy + Delta-G solvation = -4096.556092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.96957 -41.50080 -38.88091 -38.18236 -36.90004 -34.39170 -33.89579 -33.49623 -33.26008 -31.32174 -30.73587 -29.66821 -26.94760 -25.89183 -25.58381 -24.85270 -24.17847 -23.64192 -21.71630 -21.42032 -20.93668 -20.02855 -19.08165 -18.75177 -18.17861 -17.17522 -17.12865 -16.34197 -16.06231 -15.94436 -15.71913 -15.54848 -15.43065 -14.96321 -14.86902 -14.82545 -14.57289 -14.29482 -14.03346 -13.95148 -13.59963 -13.48532 -13.41262 -13.20046 -13.03300 -12.81358 -12.77018 -12.62068 -12.34770 -12.14437 -11.94798 -11.91580 -11.88758 -11.72227 -11.61724 -11.46485 -11.33385 -11.26912 -10.92415 -10.84447 -10.42238 -9.99820 -9.45836 -8.66206 -7.76013 -4.95639 -0.11496 1.05940 1.43943 1.44447 1.52137 1.55355 2.11106 2.32879 2.66381 2.88042 3.34421 3.58512 3.69545 3.77764 3.90654 3.92383 3.96280 4.03315 4.04791 4.12309 4.25296 4.27515 4.34453 4.40295 4.41940 4.45827 4.52184 4.62829 4.78832 4.83994 4.84469 4.88278 4.94279 4.95166 5.00031 5.03121 5.09614 5.11081 5.14686 5.16326 5.27381 5.28482 5.29353 5.35118 5.47880 5.53226 5.59967 5.69357 5.88867 6.42616 6.46158 7.01201 7.31626 7.53543 8.30932 8.54907 9.48524 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008203 B = 0.006511 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3412.439443 B = 4299.119134 C = 6802.483964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 H 0.067 0.933 4 N -0.711 5.711 5 C -0.158 4.158 6 H 0.056 0.944 7 C -0.087 4.087 8 N -0.978 5.978 9 Si 0.945 3.055 10 H -0.292 1.292 11 H -0.304 1.304 12 H -0.278 1.278 13 C 0.150 3.850 14 H 0.103 0.897 15 C -0.127 4.127 16 C -0.109 4.109 17 C -0.130 4.130 18 C 0.094 3.906 19 N -0.599 5.599 20 C 0.583 3.417 21 O -0.472 6.472 22 C -0.081 4.081 23 O 0.088 5.912 24 N -0.360 5.360 25 C 0.023 3.977 26 C -0.138 4.138 27 C -0.045 4.045 28 C -0.113 4.113 29 C -0.116 4.116 30 C -0.036 4.036 31 H 0.030 0.970 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.368 0.632 35 H 0.238 0.762 36 H 0.035 0.965 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.036 0.964 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.053 0.947 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.048 0.952 49 H 0.111 0.889 50 H 0.114 0.886 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.872 3.768 14.467 16.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 H 0.085 0.915 4 N -0.351 5.351 5 C -0.291 4.291 6 H 0.074 0.926 7 C -0.277 4.277 8 N -0.633 5.633 9 Si 0.778 3.222 10 H -0.220 1.220 11 H -0.232 1.232 12 H -0.203 1.203 13 C 0.047 3.953 14 H 0.121 0.879 15 C -0.165 4.165 16 C -0.147 4.147 17 C -0.169 4.169 18 C -0.028 4.028 19 N -0.333 5.333 20 C 0.367 3.633 21 O -0.344 6.344 22 C -0.144 4.144 23 O 0.027 5.973 24 N -0.070 5.070 25 C -0.138 4.138 26 C -0.143 4.143 27 C -0.083 4.083 28 C -0.151 4.151 29 C -0.154 4.154 30 C -0.074 4.074 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.201 0.799 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.055 0.945 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.118 0.882 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.067 0.933 49 H 0.129 0.871 50 H 0.132 0.868 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.318 3.726 14.754 17.342 hybrid contribution -0.392 -0.023 -2.100 2.136 sum 7.925 3.703 12.654 15.383 Atomic orbital electron populations 1.22389 0.97943 1.00824 1.00593 1.20901 0.91731 0.97110 0.85312 0.91540 1.42527 1.77480 1.09224 1.05890 1.19203 1.29821 0.92616 0.87482 0.92559 1.25107 1.05654 0.96717 1.00228 1.69790 1.55587 1.09808 1.28130 0.85495 0.77681 0.77520 0.81518 1.22037 1.23190 1.20335 1.21781 0.77591 0.96902 0.98986 0.87894 1.21993 1.01338 0.94398 0.98780 1.21496 0.94172 1.00901 0.98086 1.21890 0.97208 0.95544 1.02211 1.22338 0.97240 0.92086 0.91167 1.47860 1.07076 1.48106 1.30275 1.16930 0.82309 0.82505 0.81552 1.90995 1.64844 1.39921 1.38624 1.23997 0.94224 1.01242 0.94956 1.85267 1.10763 1.57112 1.44194 1.73279 0.98544 1.18255 1.16946 1.23929 0.98265 0.97749 0.93873 1.21332 0.92212 1.01578 0.99161 1.19996 0.99509 0.96891 0.91871 1.21672 0.92473 0.98125 1.02807 1.21650 0.99511 0.98882 0.95379 1.20349 0.89889 1.02872 0.94243 0.95074 0.93576 0.90932 0.79890 0.95276 0.94582 0.89603 0.90926 0.89269 0.94537 0.88017 0.89202 0.88241 0.90660 0.92884 0.89983 0.89922 0.93275 0.87082 0.86820 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.47 9.08 71.98 0.65 -4.82 16 2 C 0.16 6.28 1.89 44.99 0.08 6.36 16 3 H 0.07 2.96 5.85 -7.63 -0.04 2.91 16 4 N -0.71 -35.84 3.49 -322.94 -1.13 -36.97 16 5 C -0.16 -9.04 8.10 84.03 0.68 -8.36 16 6 H 0.06 3.28 7.83 -2.91 -0.02 3.25 16 7 C -0.09 -5.23 5.50 84.86 0.47 -4.76 16 8 N -0.98 -62.14 13.06 21.65 0.28 -61.86 16 9 Si 0.95 49.07 29.55 68.60 2.03 51.10 16 10 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 11 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 12 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 13 C 0.15 4.67 2.76 45.12 0.12 4.80 16 14 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 15 C -0.13 -3.68 4.83 30.82 0.15 -3.53 16 16 C -0.11 -2.33 5.88 30.62 0.18 -2.15 16 17 C -0.13 -3.03 6.08 30.67 0.19 -2.84 16 18 C 0.09 2.37 6.34 86.36 0.55 2.92 16 19 N -0.60 -19.73 2.96 -797.98 -2.36 -22.09 16 20 C 0.58 23.52 7.12 86.69 0.62 24.14 16 21 O -0.47 -22.03 9.05 -3.97 -0.04 -22.07 16 22 C -0.08 -3.07 6.97 24.03 0.17 -2.90 16 23 O 0.09 2.98 7.81 59.55 0.47 3.44 16 24 N -0.36 -11.88 12.03 -50.87 -0.61 -12.49 16 25 C 0.02 0.73 7.21 43.77 0.32 1.04 16 26 C -0.14 -5.05 6.02 -19.92 -0.12 -5.17 16 27 C -0.05 -1.63 5.64 29.86 0.17 -1.46 16 28 C -0.11 -2.83 5.87 30.79 0.18 -2.65 16 29 C -0.12 -2.50 5.84 30.77 0.18 -2.32 16 30 C -0.04 -0.77 6.32 30.01 0.19 -0.58 16 31 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.05 1.60 6.92 -2.39 -0.02 1.58 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.37 20.19 5.82 -92.70 -0.54 19.65 16 35 H 0.24 15.02 8.31 -92.71 -0.77 14.25 16 36 H 0.04 1.38 6.22 -2.39 -0.01 1.36 16 37 H 0.09 2.25 6.95 -2.39 -0.02 2.23 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 2.49 3.81 -45.74 -0.17 2.31 16 43 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.07 2.89 7.69 -2.39 -0.02 2.87 16 45 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.08 1.76 8.10 -2.38 -0.02 1.74 16 48 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 49 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -73.51 382.20 3.62 -69.89 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.21 Total: 33.34 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 4.77 Total: -2.30 kcal Atomic # 7 Polarization: -129.59 SS G_CDS: -3.82 Total: -133.41 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.43 Total: -18.62 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.03 Total: 51.10 kcal Total: -73.51 3.62 -69.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752143406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.717 kcal (2) G-P(sol) polarization free energy of solvation -73.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds