Wall clock time and date at job start Wed Apr 1 2020 04:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47448 * 2 1 4 4 N 1.46901 * 109.47225 * 239.99186 * 2 1 3 5 5 C 1.46900 * 110.99490 * 85.00348 * 4 2 1 6 6 C 1.50704 * 109.46745 * 179.97438 * 5 4 2 7 7 O 1.21291 * 119.99947 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99938 * 179.97438 * 6 5 4 9 9 C 1.37094 * 120.00172 * 179.97438 * 8 6 5 10 10 H 1.07998 * 120.00070 * 0.02562 * 9 8 6 11 11 C 1.38948 * 120.00391 * 180.02562 * 9 8 6 12 12 N 1.31419 * 119.99856 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00255 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46907 * 60.00190 * 13 11 9 15 15 H 1.48501 * 109.46895 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46963 * 299.99935 * 13 11 9 17 17 C 1.52999 * 109.46506 * 119.99560 * 2 1 3 18 18 H 1.09005 * 109.70708 * 304.48815 * 17 2 1 19 19 C 1.53192 * 109.58797 * 64.84631 * 17 2 1 20 20 C 1.53045 * 109.33899 * 174.40386 * 19 17 2 21 21 C 1.53041 * 109.53840 * 298.68124 * 20 19 17 22 22 C 1.53196 * 109.33647 * 61.32097 * 21 20 19 23 23 N 1.46924 * 109.58524 * 184.13307 * 17 2 1 24 24 C 1.34779 * 120.63348 * 6.58626 * 23 17 2 25 25 O 1.21622 * 119.99428 * 5.88048 * 24 23 17 26 26 C 1.43198 * 120.00484 * 185.88729 * 24 23 17 27 27 C 5.00303 * 140.22281 * 353.11152 * 3 1 2 28 28 C 6.45321 * 142.58951 * 354.62515 * 3 1 2 29 29 C 1.53002 * 117.49678 * 197.97251 * 28 27 26 30 30 C 1.52999 * 60.00019 * 252.51410 * 29 28 27 31 31 H 1.08998 * 109.47615 * 174.19926 * 1 2 3 32 32 H 1.09001 * 109.47627 * 294.20401 * 1 2 3 33 33 H 1.09002 * 109.46631 * 54.20170 * 1 2 3 34 34 H 1.00900 * 110.99998 * 208.95667 * 4 2 1 35 35 H 1.08995 * 109.47107 * 299.99617 * 5 4 2 36 36 H 1.08999 * 109.46949 * 59.99998 * 5 4 2 37 37 H 0.97002 * 120.00244 * 0.02562 * 8 6 5 38 38 H 0.96994 * 120.00184 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.49500 * 294.36705 * 19 17 2 40 40 H 1.08998 * 109.49765 * 54.43980 * 19 17 2 41 41 H 1.09004 * 109.46227 * 58.66955 * 20 19 17 42 42 H 1.09000 * 109.46237 * 178.62913 * 20 19 17 43 43 H 1.08991 * 109.47337 * 301.36613 * 21 20 19 44 44 H 1.08996 * 109.49565 * 181.28226 * 21 20 19 45 45 H 1.09004 * 109.58401 * 185.59674 * 22 21 20 46 46 H 1.08992 * 109.58840 * 65.16725 * 22 21 20 47 47 H 1.08998 * 115.55516 * 343.68318 * 28 27 26 48 48 H 1.09001 * 117.49720 * 0.02562 * 29 28 27 49 49 H 1.08998 * 117.49723 * 145.02283 * 29 28 27 50 50 H 1.08998 * 117.50070 * 252.50726 * 30 29 28 51 51 H 1.09001 * 117.49969 * 107.49591 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6927 -1.1993 5 6 2.0825 0.2224 -2.3468 6 6 2.5886 -0.5219 -3.5556 7 8 2.8698 -1.6986 -3.4694 8 7 2.7288 0.1201 -4.7323 9 6 3.1897 -0.5568 -5.8318 10 1 3.4401 -1.6046 -5.7551 11 6 3.3348 0.1051 -7.0448 12 7 3.0307 1.3802 -7.1380 13 14 3.9621 -0.8174 -8.5431 14 1 3.0410 -1.9397 -8.8548 15 1 4.0250 0.1075 -9.7033 16 1 5.3183 -1.3533 -8.2625 17 6 2.0399 -0.7212 1.2493 18 1 1.6145 -0.2587 2.1400 19 6 1.6326 -2.1969 1.1926 20 6 2.2624 -2.9421 2.3718 21 6 3.7874 -2.8572 2.2753 22 6 4.2190 -1.3889 2.3443 23 7 3.5057 -0.6369 1.3029 24 6 4.1833 0.1157 0.4135 25 8 3.5787 0.8167 -0.3753 26 6 5.6150 0.0898 0.3972 27 6 6.7886 0.0687 0.3839 28 6 8.2603 0.0421 0.3672 29 6 8.9946 1.3200 0.7780 30 6 8.9702 0.8900 -0.6901 31 1 -0.3634 -1.0224 -0.1039 32 1 -0.3634 0.4213 0.9373 33 1 -0.3633 0.6011 -0.8336 34 1 2.9173 -1.1207 -1.0285 35 1 1.0872 0.6160 -2.5525 36 1 2.7589 1.0459 -2.1181 37 1 2.5044 1.0612 -4.8011 38 1 3.1315 1.8423 -7.9849 39 1 0.5470 -2.2771 1.2496 40 1 1.9814 -2.6349 0.2574 41 1 1.9323 -2.4883 3.3063 42 1 1.9542 -3.9873 2.3472 43 1 4.1163 -3.2890 1.3302 44 1 4.2354 -3.4073 3.1027 45 1 5.2936 -1.3157 2.1766 46 1 3.9714 -0.9809 3.3242 47 1 8.7165 -0.9101 0.6382 48 1 8.3880 2.1802 1.0609 49 1 9.9341 1.2087 1.3194 50 1 9.8935 0.4959 -1.1146 51 1 8.3475 1.4675 -1.3734 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752147214.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:15 Heat of formation + Delta-G solvation = 40.560946 kcal Electronic energy + Delta-G solvation = -31644.852479 eV Core-core repulsion = 27547.764554 eV Total energy + Delta-G solvation = -4097.087925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.05221 -37.98031 -37.85028 -37.52206 -35.84574 -33.74402 -33.27847 -32.43163 -31.57735 -30.96477 -29.10943 -26.42430 -26.12840 -24.37564 -24.17576 -23.36917 -22.71452 -21.90387 -20.70794 -19.82599 -19.01985 -17.94147 -17.66249 -16.94516 -16.40476 -15.88837 -15.62988 -15.34629 -15.02989 -14.84465 -14.61849 -14.38952 -14.06150 -13.98646 -13.66297 -13.43774 -13.16791 -12.85223 -12.71537 -12.64557 -12.32664 -12.15464 -11.86890 -11.83332 -11.72160 -11.56203 -11.47367 -11.36084 -11.20570 -11.14106 -10.96455 -10.85012 -10.75380 -10.54437 -10.34783 -10.23277 -10.07197 -9.92362 -9.34868 -9.24910 -8.77825 -8.14612 -7.79837 -7.57346 -6.26479 -3.66512 1.42061 2.12254 2.74411 3.23142 3.28934 3.32741 3.37861 3.73336 3.85791 4.15798 4.27145 4.47417 4.48852 4.57164 4.63260 4.64903 4.70147 4.74714 4.96037 5.01727 5.12687 5.21554 5.29277 5.30844 5.36476 5.42015 5.43908 5.53519 5.57547 5.68901 5.70151 5.74856 5.75741 5.81021 5.87068 5.91335 6.00591 6.01495 6.23163 6.31179 6.35307 6.41856 6.46360 6.59667 6.75913 7.12150 7.17923 7.62517 7.68577 8.00948 8.08951 8.23992 8.80370 9.34202 9.74220 10.27461 10.91805 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007738 B = 0.003646 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3617.708997 B = 7678.364515 C =10143.775062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 H 0.089 0.911 4 N -0.649 5.649 5 C 0.053 3.947 6 C 0.448 3.552 7 O -0.589 6.589 8 N -0.569 5.569 9 C -0.295 4.295 10 H 0.100 0.900 11 C 0.020 3.980 12 N -0.905 5.905 13 Si 0.929 3.071 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C 0.151 3.849 18 H 0.079 0.921 19 C -0.131 4.131 20 C -0.120 4.120 21 C -0.137 4.137 22 C 0.110 3.890 23 N -0.600 5.600 24 C 0.628 3.372 25 O -0.504 6.504 26 C -0.211 4.211 27 C -0.057 4.057 28 C -0.065 4.065 29 C -0.160 4.160 30 C -0.159 4.159 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.339 0.661 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.392 0.608 38 H 0.270 0.730 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.135 0.865 48 H 0.099 0.901 49 H 0.107 0.893 50 H 0.109 0.891 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.679 -1.493 24.251 24.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.040 4.040 3 H 0.107 0.893 4 N -0.283 5.283 5 C -0.080 4.080 6 C 0.234 3.766 7 O -0.474 6.474 8 N -0.206 5.206 9 C -0.425 4.425 10 H 0.118 0.882 11 C -0.181 4.181 12 N -0.547 5.547 13 Si 0.756 3.244 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.201 1.201 17 C 0.048 3.952 18 H 0.096 0.904 19 C -0.169 4.169 20 C -0.158 4.158 21 C -0.175 4.175 22 C -0.013 4.013 23 N -0.334 5.334 24 C 0.418 3.582 25 O -0.382 6.382 26 C -0.214 4.214 27 C -0.060 4.060 28 C -0.083 4.083 29 C -0.197 4.197 30 C -0.196 4.196 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.159 0.841 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.089 0.911 47 H 0.153 0.847 48 H 0.118 0.882 49 H 0.125 0.875 50 H 0.127 0.873 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.918 -2.033 23.554 24.148 hybrid contribution 0.984 0.563 -0.627 1.295 sum 5.902 -1.469 22.928 23.721 Atomic orbital electron populations 1.21905 0.95227 1.02337 1.00689 1.22102 0.94574 0.99113 0.88240 0.89341 1.60418 1.33950 1.31254 1.02702 1.21716 1.00817 0.95035 0.90384 1.20042 0.84022 0.88059 0.84496 1.90475 1.55478 1.16441 1.84976 1.41849 1.58298 1.12423 1.08009 1.19630 1.39601 0.96300 0.86967 0.88235 1.25221 0.98020 0.95762 0.99083 1.69619 1.49242 1.08826 1.26990 0.85956 0.79338 0.78819 0.80287 1.20005 1.21054 1.20079 1.21601 0.77318 0.97124 0.99115 0.90352 1.21989 1.01174 0.93916 0.99812 1.21551 0.94759 1.00893 0.98571 1.21939 0.96950 0.95573 1.03061 1.21757 0.97136 0.91800 0.90602 1.47960 1.07365 1.47015 1.31014 1.14922 0.82493 0.80301 0.80488 1.90868 1.66907 1.41041 1.39370 1.20625 0.92331 1.03939 1.04490 1.21330 0.92013 0.96202 0.96444 1.18904 0.83755 0.97866 1.07777 1.23087 1.01722 0.96498 0.98369 1.23143 1.02251 1.01937 0.92233 0.92033 0.93246 0.92477 0.84117 0.90657 0.91458 0.77526 0.92039 0.90270 0.89471 0.92114 0.91495 0.90973 0.90763 0.89802 0.91053 0.84732 0.88212 0.87456 0.87297 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.99 37.16 0.33 -1.52 16 2 C 0.07 1.04 1.67 -67.71 -0.11 0.92 16 3 H 0.09 1.47 5.54 -52.95 -0.29 1.18 16 4 N -0.65 -12.31 4.66 -107.99 -0.50 -12.81 16 5 C 0.05 1.13 5.49 -4.97 -0.03 1.11 16 6 C 0.45 11.90 7.82 -10.99 -0.09 11.81 16 7 O -0.59 -17.47 15.78 5.55 0.09 -17.38 16 8 N -0.57 -15.89 5.29 -10.97 -0.06 -15.94 16 9 C -0.30 -8.82 9.68 -14.94 -0.14 -8.97 16 10 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 11 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 12 N -0.90 -26.11 13.05 55.50 0.72 -25.39 16 13 Si 0.93 22.18 29.55 -169.99 -5.02 17.15 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 C 0.15 1.80 2.63 -67.60 -0.18 1.62 16 18 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 19 C -0.13 -1.46 4.85 -26.61 -0.13 -1.59 16 20 C -0.12 -1.02 5.89 -26.69 -0.16 -1.18 16 21 C -0.14 -1.16 6.08 -26.61 -0.16 -1.32 16 22 C 0.11 1.00 6.34 -3.71 -0.02 0.98 16 23 N -0.60 -7.41 2.80 -168.07 -0.47 -7.88 16 24 C 0.63 9.82 6.14 -14.33 -0.09 9.73 16 25 O -0.50 -9.31 9.02 5.26 0.05 -9.27 16 26 C -0.21 -3.13 11.58 -38.84 -0.45 -3.58 16 27 C -0.06 -0.74 13.41 -37.12 -0.50 -1.24 16 28 C -0.07 -0.61 6.22 -93.40 -0.58 -1.19 16 29 C -0.16 -1.18 10.21 -26.73 -0.27 -1.45 16 30 C -0.16 -1.41 10.21 -26.73 -0.27 -1.68 16 31 H 0.06 0.80 7.00 -51.93 -0.36 0.44 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.79 7.61 -51.93 -0.39 0.40 16 34 H 0.34 6.95 5.46 -39.29 -0.21 6.74 16 35 H 0.08 1.51 7.55 -51.93 -0.39 1.12 16 36 H 0.07 1.47 5.85 -51.93 -0.30 1.17 16 37 H 0.39 10.59 7.90 -40.82 -0.32 10.27 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.08 0.82 7.00 -51.93 -0.36 0.45 16 40 H 0.09 1.26 7.04 -51.93 -0.37 0.90 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.76 6.31 -51.93 -0.33 0.43 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.14 0.95 8.14 -51.93 -0.42 0.52 16 48 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 404.58 15.07 6.10 6.10 Total: -1.00 -34.99 404.58 -9.97 -44.96 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: -7.92 Total: 17.53 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -2.94 Total: 2.93 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.31 Total: -62.02 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: 0.13 Total: -26.65 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.99 -9.97 -44.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752147214.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.520 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds