Wall clock time and date at job start Wed Apr 1 2020 04:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47448 * 2 1 4 4 N 1.46901 * 109.47225 * 239.99186 * 2 1 3 5 5 C 1.46900 * 110.99490 * 85.00348 * 4 2 1 6 6 C 1.50704 * 109.46745 * 179.97438 * 5 4 2 7 7 O 1.21291 * 119.99947 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99938 * 179.97438 * 6 5 4 9 9 C 1.37094 * 120.00172 * 179.97438 * 8 6 5 10 10 H 1.07998 * 120.00070 * 0.02562 * 9 8 6 11 11 C 1.38948 * 120.00391 * 180.02562 * 9 8 6 12 12 N 1.31419 * 119.99856 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00255 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46907 * 60.00190 * 13 11 9 15 15 H 1.48501 * 109.46895 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46963 * 299.99935 * 13 11 9 17 17 C 1.52999 * 109.46506 * 119.99560 * 2 1 3 18 18 H 1.09005 * 109.70708 * 304.48815 * 17 2 1 19 19 C 1.53192 * 109.58797 * 64.84631 * 17 2 1 20 20 C 1.53045 * 109.33899 * 174.40386 * 19 17 2 21 21 C 1.53041 * 109.53840 * 298.68124 * 20 19 17 22 22 C 1.53196 * 109.33647 * 61.32097 * 21 20 19 23 23 N 1.46924 * 109.58524 * 184.13307 * 17 2 1 24 24 C 1.34779 * 120.63348 * 6.58626 * 23 17 2 25 25 O 1.21622 * 119.99428 * 5.88048 * 24 23 17 26 26 C 1.43198 * 120.00484 * 185.88729 * 24 23 17 27 27 C 5.00303 * 140.22281 * 353.11152 * 3 1 2 28 28 C 6.45321 * 142.58951 * 354.62515 * 3 1 2 29 29 C 1.53002 * 117.49678 * 197.97251 * 28 27 26 30 30 C 1.52999 * 60.00019 * 252.51410 * 29 28 27 31 31 H 1.08998 * 109.47615 * 174.19926 * 1 2 3 32 32 H 1.09001 * 109.47627 * 294.20401 * 1 2 3 33 33 H 1.09002 * 109.46631 * 54.20170 * 1 2 3 34 34 H 1.00900 * 110.99998 * 208.95667 * 4 2 1 35 35 H 1.08995 * 109.47107 * 299.99617 * 5 4 2 36 36 H 1.08999 * 109.46949 * 59.99998 * 5 4 2 37 37 H 0.97002 * 120.00244 * 0.02562 * 8 6 5 38 38 H 0.96994 * 120.00184 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.49500 * 294.36705 * 19 17 2 40 40 H 1.08998 * 109.49765 * 54.43980 * 19 17 2 41 41 H 1.09004 * 109.46227 * 58.66955 * 20 19 17 42 42 H 1.09000 * 109.46237 * 178.62913 * 20 19 17 43 43 H 1.08991 * 109.47337 * 301.36613 * 21 20 19 44 44 H 1.08996 * 109.49565 * 181.28226 * 21 20 19 45 45 H 1.09004 * 109.58401 * 185.59674 * 22 21 20 46 46 H 1.08992 * 109.58840 * 65.16725 * 22 21 20 47 47 H 1.08998 * 115.55516 * 343.68318 * 28 27 26 48 48 H 1.09001 * 117.49720 * 0.02562 * 29 28 27 49 49 H 1.08998 * 117.49723 * 145.02283 * 29 28 27 50 50 H 1.08998 * 117.50070 * 252.50726 * 30 29 28 51 51 H 1.09001 * 117.49969 * 107.49591 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6927 -1.1993 5 6 2.0825 0.2224 -2.3468 6 6 2.5886 -0.5219 -3.5556 7 8 2.8698 -1.6986 -3.4694 8 7 2.7288 0.1201 -4.7323 9 6 3.1897 -0.5568 -5.8318 10 1 3.4401 -1.6046 -5.7551 11 6 3.3348 0.1051 -7.0448 12 7 3.0307 1.3802 -7.1380 13 14 3.9621 -0.8174 -8.5431 14 1 3.0410 -1.9397 -8.8548 15 1 4.0250 0.1075 -9.7033 16 1 5.3183 -1.3533 -8.2625 17 6 2.0399 -0.7212 1.2493 18 1 1.6145 -0.2587 2.1400 19 6 1.6326 -2.1969 1.1926 20 6 2.2624 -2.9421 2.3718 21 6 3.7874 -2.8572 2.2753 22 6 4.2190 -1.3889 2.3443 23 7 3.5057 -0.6369 1.3029 24 6 4.1833 0.1157 0.4135 25 8 3.5787 0.8167 -0.3753 26 6 5.6150 0.0898 0.3972 27 6 6.7886 0.0687 0.3839 28 6 8.2603 0.0421 0.3672 29 6 8.9946 1.3200 0.7780 30 6 8.9702 0.8900 -0.6901 31 1 -0.3634 -1.0224 -0.1039 32 1 -0.3634 0.4213 0.9373 33 1 -0.3633 0.6011 -0.8336 34 1 2.9173 -1.1207 -1.0285 35 1 1.0872 0.6160 -2.5525 36 1 2.7589 1.0459 -2.1181 37 1 2.5044 1.0612 -4.8011 38 1 3.1315 1.8423 -7.9849 39 1 0.5470 -2.2771 1.2496 40 1 1.9814 -2.6349 0.2574 41 1 1.9323 -2.4883 3.3063 42 1 1.9542 -3.9873 2.3472 43 1 4.1163 -3.2890 1.3302 44 1 4.2354 -3.4073 3.1027 45 1 5.2936 -1.3157 2.1766 46 1 3.9714 -0.9809 3.3242 47 1 8.7165 -0.9101 0.6382 48 1 8.3880 2.1802 1.0609 49 1 9.9341 1.2087 1.3194 50 1 9.8935 0.4959 -1.1146 51 1 8.3475 1.4675 -1.3734 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752147214.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:13 Heat of formation + Delta-G solvation = 17.357500 kcal Electronic energy + Delta-G solvation = -31645.858656 eV Core-core repulsion = 27547.764554 eV Total energy + Delta-G solvation = -4098.094102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.14057 -40.05497 -38.66659 -38.47487 -37.15302 -35.93834 -34.28428 -33.45331 -33.28945 -32.71499 -30.15687 -28.09194 -27.30104 -25.94661 -25.19399 -24.50402 -23.35552 -22.85384 -21.72453 -21.08930 -20.78817 -19.92785 -18.94037 -18.07127 -17.53427 -17.32689 -17.11874 -16.60578 -16.32174 -16.07659 -15.84366 -15.59468 -15.54357 -15.40032 -15.01591 -14.83198 -14.24855 -14.15417 -13.87341 -13.62646 -13.54667 -13.49226 -13.26748 -13.10867 -13.01333 -12.85642 -12.67661 -12.49466 -12.46570 -12.36730 -12.25130 -12.13412 -12.04927 -11.86329 -11.60912 -11.53090 -11.43166 -11.12118 -10.81508 -10.48595 -10.25002 -10.04683 -9.75259 -9.08263 -8.47989 -5.98053 0.34819 1.10595 1.37089 1.37564 1.50118 1.75559 2.03902 2.24731 2.27618 2.84922 3.01813 3.04507 3.18331 3.59153 3.61322 3.77181 3.81793 3.93045 3.97483 3.98338 4.08738 4.19460 4.26515 4.37425 4.39803 4.46539 4.52125 4.60846 4.65735 4.69768 4.70652 4.76385 4.87880 4.90495 4.96677 4.97799 5.03314 5.06262 5.15321 5.15866 5.24507 5.27146 5.35241 5.37294 5.53936 5.65600 5.91140 6.09225 6.15829 6.18874 6.46846 6.58007 6.95598 7.09237 7.52590 8.08495 8.69889 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007738 B = 0.003646 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3617.708997 B = 7678.364515 C =10143.775062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.067 3.933 3 H 0.073 0.927 4 N -0.650 5.650 5 C 0.071 3.929 6 C 0.440 3.560 7 O -0.625 6.625 8 N -0.574 5.574 9 C -0.337 4.337 10 H 0.078 0.922 11 C -0.015 4.015 12 N -0.923 5.923 13 Si 0.998 3.002 14 H -0.270 1.270 15 H -0.267 1.267 16 H -0.271 1.271 17 C 0.151 3.849 18 H 0.112 0.888 19 C -0.126 4.126 20 C -0.114 4.114 21 C -0.133 4.133 22 C 0.105 3.895 23 N -0.593 5.593 24 C 0.618 3.382 25 O -0.548 6.548 26 C -0.262 4.262 27 C -0.040 4.040 28 C -0.083 4.083 29 C -0.136 4.136 30 C -0.170 4.170 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.326 0.674 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.393 0.607 38 H 0.278 0.722 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.104 0.896 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.163 0.837 48 H 0.091 0.909 49 H 0.141 0.859 50 H 0.132 0.868 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.506 -1.902 26.329 27.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.042 4.042 3 H 0.090 0.910 4 N -0.283 5.283 5 C -0.061 4.061 6 C 0.228 3.772 7 O -0.512 6.512 8 N -0.211 5.211 9 C -0.466 4.466 10 H 0.096 0.904 11 C -0.214 4.214 12 N -0.564 5.564 13 Si 0.820 3.180 14 H -0.195 1.195 15 H -0.191 1.191 16 H -0.196 1.196 17 C 0.049 3.951 18 H 0.129 0.871 19 C -0.164 4.164 20 C -0.152 4.152 21 C -0.171 4.171 22 C -0.016 4.016 23 N -0.325 5.325 24 C 0.408 3.592 25 O -0.430 6.430 26 C -0.265 4.265 27 C -0.043 4.043 28 C -0.101 4.101 29 C -0.172 4.172 30 C -0.207 4.207 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.145 0.855 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.227 0.773 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.122 0.878 45 H 0.099 0.901 46 H 0.120 0.880 47 H 0.180 0.820 48 H 0.110 0.890 49 H 0.159 0.841 50 H 0.150 0.850 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.724 -2.435 25.682 26.424 hybrid contribution 0.774 0.719 -1.237 1.627 sum 6.498 -1.716 24.445 25.352 Atomic orbital electron populations 1.21871 0.93488 1.02243 1.01955 1.22171 0.95743 0.98343 0.87963 0.90968 1.60521 1.33027 1.31091 1.03671 1.21504 1.00841 0.94528 0.89252 1.20939 0.82968 0.87895 0.85363 1.90430 1.56918 1.18186 1.85677 1.41928 1.58457 1.12421 1.08315 1.19656 1.42412 0.95935 0.88632 0.90448 1.26133 0.97140 0.96668 1.01462 1.69697 1.48590 1.09856 1.28220 0.84934 0.78705 0.77826 0.76486 1.19517 1.19079 1.19602 1.21708 0.77180 0.97567 0.98621 0.87052 1.21930 1.01967 0.93303 0.99245 1.21539 0.94286 1.01098 0.98228 1.21932 0.97303 0.95142 1.02758 1.22038 0.96880 0.91960 0.90730 1.48092 1.07692 1.46030 1.30636 1.15211 0.82997 0.80396 0.80604 1.90817 1.67742 1.43171 1.41231 1.20865 0.92898 1.06019 1.06713 1.22218 0.93071 0.94363 0.94605 1.19329 0.81619 1.00139 1.08981 1.23214 1.02276 0.94696 0.97037 1.23210 1.02599 1.02036 0.92840 0.92179 0.89867 0.93882 0.85529 0.89325 0.91953 0.77331 0.91229 0.89138 0.93552 0.89430 0.90833 0.93843 0.87784 0.90063 0.88009 0.81971 0.88996 0.84056 0.85036 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.99 71.98 0.65 -2.80 16 2 C 0.07 2.03 1.67 44.92 0.07 2.11 16 3 H 0.07 2.49 5.54 -18.56 -0.10 2.39 16 4 N -0.65 -26.00 4.66 -495.58 -2.31 -28.31 16 5 C 0.07 3.24 5.49 85.56 0.47 3.70 16 6 C 0.44 24.77 7.82 87.66 0.69 25.45 16 7 O -0.63 -39.25 15.78 -3.06 -0.05 -39.30 16 8 N -0.57 -33.69 5.29 -306.99 -1.62 -35.31 16 9 C -0.34 -20.94 9.68 84.04 0.81 -20.12 16 10 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 11 C -0.01 -0.84 5.50 84.92 0.47 -0.38 16 12 N -0.92 -53.55 13.05 21.66 0.28 -53.27 16 13 Si 1.00 45.56 29.55 68.60 2.03 47.59 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 15 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 C 0.15 3.47 2.63 44.98 0.12 3.59 16 18 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 19 C -0.13 -2.70 4.85 30.67 0.15 -2.56 16 20 C -0.11 -1.66 5.89 30.62 0.18 -1.48 16 21 C -0.13 -2.04 6.08 30.67 0.19 -1.85 16 22 C 0.11 1.76 6.34 86.36 0.55 2.31 16 23 N -0.59 -14.66 2.80 -803.89 -2.25 -16.92 16 24 C 0.62 20.43 6.14 85.49 0.52 20.95 16 25 O -0.55 -21.72 9.02 -4.10 -0.04 -21.76 16 26 C -0.26 -8.23 11.58 30.02 0.35 -7.88 16 27 C -0.04 -1.06 13.41 31.13 0.42 -0.65 16 28 C -0.08 -1.45 6.22 -12.60 -0.08 -1.53 16 29 C -0.14 -1.74 10.21 30.59 0.31 -1.42 16 30 C -0.17 -2.90 10.21 30.59 0.31 -2.58 16 31 H 0.06 1.52 7.00 -2.39 -0.02 1.51 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.04 1.19 7.61 -2.39 -0.02 1.17 16 34 H 0.33 14.36 5.46 -89.69 -0.49 13.87 16 35 H 0.09 3.73 7.55 -2.39 -0.02 3.71 16 36 H 0.06 2.93 5.85 -2.39 -0.01 2.92 16 37 H 0.39 22.30 7.90 -92.71 -0.73 21.57 16 38 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.09 1.71 7.00 -2.39 -0.02 1.70 16 40 H 0.05 1.39 7.04 -2.39 -0.02 1.37 16 41 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 45 H 0.08 1.42 6.31 -2.38 -0.02 1.41 16 46 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.16 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -81.21 404.58 1.87 -79.35 By element: Atomic # 1 Polarization: 53.42 SS G_CDS: -0.34 Total: 53.07 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 6.17 Total: 14.87 kcal Atomic # 7 Polarization: -127.91 SS G_CDS: -5.90 Total: -133.81 kcal Atomic # 8 Polarization: -60.97 SS G_CDS: -0.09 Total: -61.06 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -81.21 1.87 -79.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752147214.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.703 kcal (2) G-P(sol) polarization free energy of solvation -81.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds