Wall clock time and date at job start Wed Apr 1 2020 04:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47330 * 2 1 4 4 N 1.46499 * 109.47300 * 120.00161 * 2 1 3 5 5 C 1.36931 * 120.00242 * 275.00040 * 4 2 1 6 6 H 1.07997 * 119.99737 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99988 * 179.97438 * 5 4 2 8 8 N 1.31615 * 120.00480 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99980 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46939 * 59.99812 * 9 7 5 11 11 H 1.48495 * 109.47356 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46991 * 300.00114 * 9 7 5 13 13 C 1.53000 * 109.47053 * 240.00317 * 2 1 3 14 14 H 1.09004 * 109.70084 * 53.06612 * 13 2 1 15 15 C 1.52757 * 109.51080 * 292.94786 * 13 2 1 16 16 C 1.53042 * 109.38586 * 185.70616 * 15 13 2 17 17 C 1.53035 * 109.53741 * 61.24162 * 16 15 13 18 18 C 1.53191 * 109.31288 * 298.63546 * 17 16 15 19 19 N 1.46928 * 108.77647 * 54.63586 * 18 17 16 20 20 C 1.34773 * 120.62949 * 126.36761 * 19 18 17 21 21 O 1.21498 * 119.99875 * 187.37808 * 20 19 18 22 22 C 1.48334 * 120.00201 * 7.37904 * 20 19 18 23 23 N 1.31495 * 127.15259 * 6.08310 * 22 20 19 24 24 O 1.21429 * 111.52472 * 179.97438 * 23 22 20 25 25 C 1.33192 * 111.57103 * 359.94036 * 24 23 22 26 26 C 1.35378 * 106.63285 * 0.10007 * 25 24 23 27 27 C 1.50063 * 124.94008 * 179.77587 * 26 25 24 28 28 C 1.53553 * 108.20211 * 343.89620 * 27 26 25 29 29 C 1.53110 * 109.51118 * 49.25054 * 28 27 26 30 30 C 1.50598 * 129.60926 * 180.12927 * 25 24 23 31 31 H 1.09002 * 109.46916 * 297.09008 * 1 2 3 32 32 H 1.09001 * 109.47115 * 57.09317 * 1 2 3 33 33 H 1.09001 * 109.47002 * 177.09112 * 1 2 3 34 34 H 0.96999 * 119.99702 * 94.99716 * 4 2 1 35 35 H 0.96999 * 120.00735 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.56278 * 65.66864 * 15 13 2 37 37 H 1.09000 * 109.36043 * 305.61904 * 15 13 2 38 38 H 1.09008 * 109.45898 * 301.21931 * 16 15 13 39 39 H 1.09007 * 109.46126 * 181.26412 * 16 15 13 40 40 H 1.09003 * 109.49730 * 178.68351 * 17 16 15 41 41 H 1.08994 * 109.49791 * 58.58947 * 17 16 15 42 42 H 1.09002 * 109.58855 * 294.84838 * 18 17 16 43 43 H 1.08995 * 109.70392 * 174.49277 * 18 17 16 44 44 H 1.08999 * 109.71400 * 103.57921 * 27 26 25 45 45 H 1.09004 * 109.71095 * 224.21036 * 27 26 25 46 46 H 1.09003 * 109.49911 * 289.21825 * 28 27 26 47 47 H 1.09005 * 109.43508 * 169.24060 * 28 27 26 48 48 H 1.09004 * 109.42649 * 170.03149 * 29 28 27 49 49 H 1.09000 * 109.42689 * 50.14470 * 29 28 27 50 50 H 1.09004 * 109.68878 * 43.55693 * 30 25 24 51 51 H 1.08993 * 109.69996 * 282.96720 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8927 1.0403 2.4241 7 6 2.6114 -0.6622 3.5092 8 7 2.9245 -1.9392 3.4501 9 14 2.7905 0.2698 5.1182 10 1 1.4686 0.8076 5.5285 11 1 3.2994 -0.6486 6.1682 12 1 3.7466 1.3915 4.9367 13 6 2.0399 -0.7212 -1.2493 14 1 1.5810 -0.2867 -2.1375 15 6 1.6807 -2.2035 -1.1650 16 6 2.3136 -2.9473 -2.3433 17 6 3.8365 -2.8131 -2.2749 18 6 4.2196 -1.3332 -2.3753 19 7 3.5006 -0.5869 -1.3338 20 6 4.1689 0.2016 -0.4688 21 8 3.5843 0.7070 0.4687 22 6 5.6182 0.4523 -0.6614 23 7 6.3616 0.0729 -1.6774 24 8 7.5142 0.4312 -1.5445 25 6 7.6896 1.1052 -0.4092 26 6 6.4847 1.1472 0.2067 27 6 6.2170 1.8080 1.5271 28 6 7.5637 2.0509 2.2237 29 6 8.5305 2.7254 1.2467 30 6 8.9393 1.7294 0.1536 31 1 -0.3633 0.4680 0.9149 32 1 -0.3633 0.5583 -0.8628 33 1 -0.3633 -1.0264 -0.0522 34 1 2.2490 -1.6318 1.1525 35 1 3.2471 -2.3967 4.2422 36 1 0.5975 -2.3192 -1.2013 37 1 2.0598 -2.6146 -0.2294 38 1 1.9529 -2.5195 -3.2788 39 1 2.0395 -4.0014 -2.2969 40 1 4.2876 -3.3626 -3.1012 41 1 4.1953 -3.2184 -1.3289 42 1 3.9421 -0.9497 -3.3572 43 1 5.2939 -1.2211 -2.2295 44 1 5.7093 2.7590 1.3661 45 1 5.5955 1.1587 2.1438 46 1 7.9819 1.0984 2.5492 47 1 7.4131 2.6961 3.0893 48 1 9.4182 3.0567 1.7857 49 1 8.0421 3.5858 0.7892 50 1 9.4769 2.2523 -0.6374 51 1 9.5760 0.9552 0.5815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752159945.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:38 Heat of formation + Delta-G solvation = 77.325100 kcal Electronic energy + Delta-G solvation = -33684.364217 eV Core-core repulsion = 29588.870505 eV Total energy + Delta-G solvation = -4095.493712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.82949 -40.05149 -37.65695 -36.79148 -35.34124 -33.52532 -32.34478 -32.07313 -30.84598 -30.12423 -29.52796 -28.00752 -25.72661 -24.34033 -23.88017 -23.53883 -22.74095 -22.56073 -20.64483 -19.95122 -19.65565 -18.33408 -17.60755 -17.08443 -16.78082 -16.14672 -15.42062 -14.98353 -14.72802 -14.52710 -14.23104 -13.97998 -13.90955 -13.72787 -13.58046 -13.43318 -13.18367 -13.01596 -12.80310 -12.67899 -12.32314 -12.14326 -12.10115 -11.88812 -11.48944 -11.28106 -11.05897 -10.99497 -10.87579 -10.68720 -10.61898 -10.59396 -10.53694 -10.47059 -10.14266 -10.08834 -9.88500 -9.65381 -9.34110 -8.88836 -8.67119 -8.44247 -7.90307 -6.56100 -5.47997 -2.69842 1.39371 2.01921 3.00370 3.33706 3.56561 3.60944 3.62050 3.85727 4.26602 4.55419 4.76843 4.79732 4.82211 4.98811 5.07312 5.12037 5.17088 5.21733 5.26700 5.41873 5.44027 5.50076 5.52113 5.62597 5.70653 5.75888 5.76499 5.80931 5.85340 5.91628 5.96881 6.06526 6.07289 6.17843 6.19060 6.20994 6.23184 6.35496 6.36842 6.38353 6.47558 6.53884 6.64104 6.66438 6.94043 7.04484 7.07590 7.40922 7.93414 7.99715 8.26323 8.69581 8.89633 9.81528 10.38833 10.75515 11.76413 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008128 B = 0.006150 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3443.885092 B = 4551.924149 C = 7131.807743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.170 3.830 3 H 0.078 0.922 4 N -0.701 5.701 5 C -0.174 4.174 6 H 0.064 0.936 7 C -0.029 4.029 8 N -0.947 5.947 9 Si 0.895 3.105 10 H -0.292 1.292 11 H -0.297 1.297 12 H -0.290 1.290 13 C 0.148 3.852 14 H 0.063 0.937 15 C -0.134 4.134 16 C -0.116 4.116 17 C -0.134 4.134 18 C 0.094 3.906 19 N -0.598 5.598 20 C 0.567 3.433 21 O -0.424 6.424 22 C 0.006 3.994 23 N -0.348 5.348 24 O 0.105 5.895 25 C -0.049 4.049 26 C -0.143 4.143 27 C -0.048 4.048 28 C -0.124 4.124 29 C -0.117 4.117 30 C -0.031 4.031 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.378 0.622 35 H 0.247 0.753 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.111 0.889 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.660 5.008 -12.427 16.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.060 3.940 3 H 0.096 0.904 4 N -0.344 5.344 5 C -0.306 4.306 6 H 0.082 0.918 7 C -0.222 4.222 8 N -0.600 5.600 9 Si 0.728 3.272 10 H -0.220 1.220 11 H -0.223 1.223 12 H -0.217 1.217 13 C 0.044 3.956 14 H 0.081 0.919 15 C -0.172 4.172 16 C -0.154 4.154 17 C -0.172 4.172 18 C -0.030 4.030 19 N -0.335 5.335 20 C 0.350 3.650 21 O -0.291 6.291 22 C -0.152 4.152 23 N -0.057 5.057 24 O 0.039 5.961 25 C -0.113 4.113 26 C -0.148 4.148 27 C -0.085 4.085 28 C -0.161 4.161 29 C -0.155 4.155 30 C -0.069 4.069 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.214 0.786 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.128 0.872 44 H 0.099 0.901 45 H 0.120 0.880 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.107 0.893 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.061 4.773 -12.828 16.415 hybrid contribution 0.165 0.171 1.424 1.443 sum 9.227 4.944 -11.405 15.480 Atomic orbital electron populations 1.22579 0.99954 1.00421 1.00069 1.20680 0.90394 0.97493 0.85470 0.90431 1.42427 1.77177 1.09688 1.05063 1.19016 1.32199 0.93099 0.86308 0.91818 1.24540 1.04258 0.95970 0.97472 1.69626 1.53616 1.08567 1.28148 0.86407 0.77549 0.78547 0.84666 1.21960 1.22328 1.21726 1.21527 0.78469 0.96121 0.99442 0.91877 1.21927 1.00618 0.95267 0.99391 1.21512 0.95184 1.00217 0.98499 1.21899 0.96616 0.96354 1.02323 1.22166 0.99283 0.91012 0.90528 1.47631 1.07080 1.46176 1.32572 1.17070 0.82871 0.82117 0.82932 1.91139 1.64336 1.47725 1.25851 1.23540 0.97874 1.01048 0.92708 1.74358 0.90235 1.18697 1.22445 1.84629 1.23585 1.52670 1.35196 1.24016 0.98911 1.00310 0.88092 1.20689 0.91235 1.02916 0.99915 1.20031 0.97402 1.00711 0.90366 1.21719 0.95007 1.01274 0.98135 1.21647 1.00048 0.97753 0.96020 1.20200 0.90662 0.98176 0.97892 0.92518 0.94892 0.93680 0.78589 0.94265 0.90960 0.90066 0.92461 0.92149 0.91494 0.91426 0.92455 0.87179 0.90090 0.88047 0.91439 0.90794 0.90408 0.91185 0.89328 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 9.34 37.16 0.35 -2.82 16 2 C 0.17 3.53 1.88 -67.93 -0.13 3.40 16 3 H 0.08 1.77 5.93 -52.09 -0.31 1.46 16 4 N -0.70 -17.66 3.63 -53.43 -0.19 -17.85 16 5 C -0.17 -4.91 7.95 -15.06 -0.12 -5.03 16 6 H 0.06 1.82 7.83 -52.49 -0.41 1.40 16 7 C -0.03 -0.86 5.50 -17.43 -0.10 -0.96 16 8 N -0.95 -29.36 13.06 55.49 0.72 -28.64 16 9 Si 0.90 23.31 29.55 -169.99 -5.02 18.29 16 10 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 11 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 13 C 0.15 2.59 2.70 -67.82 -0.18 2.41 16 14 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 15 C -0.13 -2.20 4.86 -26.83 -0.13 -2.33 16 16 C -0.12 -1.58 5.89 -26.69 -0.16 -1.74 16 17 C -0.13 -1.88 6.08 -26.61 -0.16 -2.04 16 18 C 0.09 1.43 6.13 -3.71 -0.02 1.40 16 19 N -0.60 -10.81 2.98 -166.39 -0.50 -11.30 16 20 C 0.57 11.62 7.43 -12.11 -0.09 11.53 16 21 O -0.42 -9.92 8.89 5.37 0.05 -9.87 16 22 C 0.01 0.12 6.86 -82.82 -0.57 -0.45 16 23 N -0.35 -5.72 8.71 33.29 0.29 -5.43 16 24 O 0.11 1.53 11.18 19.18 0.21 1.75 16 25 C -0.05 -0.66 7.38 -35.38 -0.26 -0.92 16 26 C -0.14 -2.37 6.04 -104.92 -0.63 -3.01 16 27 C -0.05 -0.78 5.65 -27.90 -0.16 -0.93 16 28 C -0.12 -1.51 5.92 -26.39 -0.16 -1.66 16 29 C -0.12 -1.06 5.88 -26.45 -0.16 -1.22 16 30 C -0.03 -0.29 6.31 -27.71 -0.17 -0.46 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.82 6.64 -51.93 -0.34 0.47 16 34 H 0.38 10.24 5.57 -40.82 -0.23 10.01 16 35 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.07 1.12 6.84 -51.93 -0.36 0.76 16 37 H 0.08 1.64 5.99 -51.93 -0.31 1.33 16 38 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.11 1.76 4.21 -55.77 -0.23 1.53 16 44 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.10 2.07 7.96 -51.93 -0.41 1.66 16 46 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 50 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -32.34 382.47 -9.60 -41.94 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -8.08 Total: 10.19 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -2.85 Total: -4.84 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 0.33 Total: -63.22 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.26 Total: -8.13 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.34 -9.60 -41.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752159945.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.265 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds