Wall clock time and date at job start Wed Apr 1 2020 04:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47758 * 2 1 4 4 N 1.46504 * 109.47086 * 120.00283 * 2 1 3 5 5 C 1.36942 * 119.99280 * 285.41288 * 4 2 1 6 6 H 1.07998 * 119.99987 * 359.97438 * 5 4 2 7 7 C 1.38819 * 119.99700 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99764 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 119.99827 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47175 * 89.99964 * 9 7 5 11 11 H 1.48505 * 109.47264 * 210.00039 * 9 7 5 12 12 H 1.48502 * 109.47408 * 329.99726 * 9 7 5 13 13 C 1.53007 * 109.47048 * 239.99459 * 2 1 3 14 14 H 1.09000 * 109.70231 * 287.35750 * 13 2 1 15 15 C 1.53192 * 109.58530 * 47.71764 * 13 2 1 16 16 C 1.53037 * 109.31124 * 174.42161 * 15 13 2 17 17 C 1.53038 * 109.53673 * 298.63083 * 16 15 13 18 18 C 1.52759 * 109.38399 * 61.24187 * 17 16 15 19 19 N 1.46921 * 109.00898 * 305.58831 * 18 17 16 20 20 C 1.34775 * 120.63217 * 233.58390 * 19 18 17 21 21 O 1.21496 * 120.00273 * 184.57155 * 20 19 18 22 22 C 1.48337 * 119.99657 * 4.56570 * 20 19 18 23 23 N 1.31492 * 127.15784 * 353.91057 * 22 20 19 24 24 O 1.21424 * 111.52783 * 180.02562 * 23 22 20 25 25 C 1.33185 * 111.57091 * 359.94645 * 24 23 22 26 26 C 1.35377 * 106.63348 * 0.09014 * 25 24 23 27 27 C 1.50069 * 124.93581 * 179.88651 * 26 25 24 28 28 C 1.53546 * 108.23258 * 343.92063 * 27 26 25 29 29 C 1.53102 * 109.50637 * 49.19176 * 28 27 26 30 30 C 1.50598 * 129.60465 * 180.24642 * 25 24 23 31 31 H 1.08996 * 109.47118 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46796 * 300.00305 * 1 2 3 33 33 H 1.08999 * 109.46964 * 60.00201 * 1 2 3 34 34 H 0.96992 * 120.00336 * 105.41179 * 4 2 1 35 35 H 0.97004 * 119.99648 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.49451 * 294.37091 * 15 13 2 37 37 H 1.09002 * 109.49748 * 54.43466 * 15 13 2 38 38 H 1.08993 * 109.46010 * 58.65591 * 16 15 13 39 39 H 1.09001 * 109.45592 * 178.60933 * 16 15 13 40 40 H 1.09008 * 109.49465 * 181.32031 * 17 16 15 41 41 H 1.08997 * 109.49968 * 301.38451 * 17 16 15 42 42 H 1.09002 * 109.51217 * 185.70192 * 18 17 16 43 43 H 1.09001 * 109.43073 * 65.42301 * 18 17 16 44 44 H 1.09000 * 109.70678 * 224.23923 * 27 26 25 45 45 H 1.08993 * 109.71028 * 103.60507 * 27 26 25 46 46 H 1.08998 * 109.46050 * 169.20211 * 28 27 26 47 47 H 1.09001 * 109.46349 * 289.17853 * 28 27 26 48 48 H 1.08998 * 109.42958 * 50.22680 * 29 28 27 49 49 H 1.09006 * 109.42818 * 170.06578 * 29 28 27 50 50 H 1.08999 * 109.69577 * 282.82734 * 30 25 24 51 51 H 1.09005 * 109.69773 * 43.37607 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.9493 -0.0758 2.4178 6 1 1.5353 0.9184 2.4994 7 6 2.4125 -0.7300 3.5512 8 7 2.9175 -1.9413 3.4517 9 14 2.3191 0.1090 5.2175 10 1 1.0219 -0.2158 5.8632 11 1 3.4327 -0.3692 6.0757 12 1 2.4284 1.5792 5.0384 13 6 2.0400 -0.7214 -1.2492 14 1 1.8739 -1.7939 -1.1478 15 6 1.2957 -0.2007 -2.4828 16 6 1.9047 -0.8227 -3.7414 17 6 3.3746 -0.4122 -3.8553 18 6 4.1414 -0.9303 -2.6399 19 7 3.4759 -0.4592 -1.4177 20 6 4.1680 0.2059 -0.4716 21 8 3.6270 0.5174 0.5706 22 6 5.5905 0.5573 -0.7029 23 7 6.3422 0.1975 -1.7200 24 8 7.4668 0.6452 -1.6233 25 6 7.6113 1.3710 -0.5160 26 6 6.4177 1.3458 0.1224 27 6 6.1241 2.0344 1.4230 28 6 7.4601 2.4048 2.0829 29 6 8.3559 3.1115 1.0620 30 6 8.8198 2.1083 -0.0022 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.3905 -1.5834 1.1228 35 1 3.2415 -2.3983 4.2436 36 1 0.2428 -0.4743 -2.4147 37 1 1.3872 0.8844 -2.5318 38 1 1.8347 -1.9087 -3.6801 39 1 1.3609 -0.4729 -4.6189 40 1 3.8014 -0.8364 -4.7642 41 1 3.4470 0.6747 -3.8922 42 1 5.1641 -0.5544 -2.6672 43 1 4.1501 -2.0202 -2.6542 44 1 5.5651 1.3640 2.0759 45 1 5.5427 2.9375 1.2378 46 1 7.2764 3.0698 2.9267 47 1 7.9547 1.4995 2.4350 48 1 7.7963 3.9151 0.5834 49 1 9.2254 3.5289 1.5700 50 1 9.5209 1.4009 0.4406 51 1 9.3026 2.6391 -0.8227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752159946.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:41 Heat of formation + Delta-G solvation = 78.872002 kcal Electronic energy + Delta-G solvation = -33404.351353 eV Core-core repulsion = 29308.924720 eV Total energy + Delta-G solvation = -4095.426633 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.83730 -40.04204 -37.68207 -36.82867 -35.38323 -33.56933 -32.41676 -32.17645 -30.87169 -30.16595 -29.77009 -27.75626 -25.79184 -24.40066 -24.18026 -23.29642 -22.76181 -22.42783 -20.58486 -20.01621 -19.71754 -18.71218 -17.59936 -17.10343 -16.66839 -16.20304 -15.45704 -15.01021 -14.87319 -14.48041 -14.42648 -13.97149 -13.83536 -13.75579 -13.50074 -13.37444 -13.21568 -13.02724 -13.00508 -12.68337 -12.47571 -12.31822 -12.11614 -11.94396 -11.54101 -11.29899 -11.10597 -11.01394 -10.91649 -10.77875 -10.69003 -10.65607 -10.57938 -10.51741 -10.17285 -9.96610 -9.89073 -9.68449 -9.42099 -8.92255 -8.64796 -8.52702 -7.97483 -6.49282 -5.48591 -2.68974 1.38634 2.00592 2.97530 3.34270 3.55960 3.61182 3.62791 3.85038 4.25469 4.53435 4.73991 4.77010 4.78934 4.89513 5.02270 5.04409 5.07634 5.13379 5.22589 5.29322 5.40981 5.43120 5.48799 5.54595 5.67354 5.71453 5.75041 5.78575 5.82875 5.92091 5.94291 5.96270 6.03973 6.07894 6.11979 6.17087 6.17379 6.19517 6.31544 6.33517 6.40376 6.48673 6.51280 6.62489 6.81438 6.98804 7.04645 7.38179 7.92094 7.94610 8.27353 8.67852 8.90186 9.79815 10.37130 10.72869 11.75691 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007402 B = 0.006195 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3781.806906 B = 4519.040653 C = 7674.068762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.180 3.820 3 H 0.058 0.942 4 N -0.690 5.690 5 C -0.183 4.183 6 H 0.063 0.937 7 C -0.026 4.026 8 N -0.943 5.943 9 Si 0.896 3.104 10 H -0.296 1.296 11 H -0.296 1.296 12 H -0.285 1.285 13 C 0.148 3.852 14 H 0.068 0.932 15 C -0.127 4.127 16 C -0.120 4.120 17 C -0.130 4.130 18 C 0.080 3.920 19 N -0.601 5.601 20 C 0.549 3.451 21 O -0.410 6.410 22 C 0.010 3.990 23 N -0.349 5.349 24 O 0.102 5.898 25 C -0.046 4.046 26 C -0.146 4.146 27 C -0.048 4.048 28 C -0.123 4.123 29 C -0.117 4.117 30 C -0.032 4.032 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.378 0.622 35 H 0.248 0.752 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.124 0.876 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.091 0.909 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.143 7.840 -14.066 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.070 3.930 3 H 0.075 0.925 4 N -0.331 5.331 5 C -0.315 4.315 6 H 0.081 0.919 7 C -0.219 4.219 8 N -0.594 5.594 9 Si 0.729 3.271 10 H -0.224 1.224 11 H -0.223 1.223 12 H -0.212 1.212 13 C 0.045 3.955 14 H 0.086 0.914 15 C -0.166 4.166 16 C -0.157 4.157 17 C -0.168 4.168 18 C -0.043 4.043 19 N -0.338 5.338 20 C 0.331 3.669 21 O -0.274 6.274 22 C -0.148 4.148 23 N -0.060 5.060 24 O 0.038 5.962 25 C -0.111 4.111 26 C -0.151 4.151 27 C -0.086 4.086 28 C -0.161 4.161 29 C -0.155 4.155 30 C -0.070 4.070 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.211 0.789 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.140 0.860 43 H 0.076 0.924 44 H 0.120 0.880 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.096 0.904 50 H 0.110 0.890 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.589 7.429 -14.343 18.294 hybrid contribution 0.077 0.199 1.382 1.399 sum 8.666 7.628 -12.961 17.357 Atomic orbital electron populations 1.22560 0.99493 1.00755 1.00016 1.20424 0.90686 0.96641 0.85244 0.92473 1.42284 1.71965 1.17003 1.01811 1.19008 1.30259 0.97915 0.84286 0.91902 1.24548 1.03235 0.96951 0.97176 1.69652 1.49188 1.13004 1.27599 0.86316 0.76783 0.78521 0.85490 1.22436 1.22299 1.21151 1.21542 0.78538 0.99726 0.95668 0.91430 1.22025 0.99744 1.00818 0.94040 1.21542 0.95662 1.00717 0.97807 1.21796 0.95890 1.01242 0.97894 1.22316 0.99424 0.99056 0.83550 1.47647 1.09218 1.57394 1.19552 1.17229 0.82716 0.82360 0.84632 1.91362 1.65517 1.47953 1.22576 1.23601 0.98049 1.00349 0.92781 1.74121 0.91339 1.18680 1.21870 1.84629 1.25697 1.49039 1.36831 1.24011 0.99062 0.99345 0.88665 1.20676 0.91957 1.02268 1.00164 1.20035 0.97299 1.00156 0.91089 1.21710 0.95482 1.00909 0.97985 1.21643 1.00236 0.97496 0.96105 1.20206 0.91439 0.96805 0.98530 0.93603 0.92635 0.94343 0.78892 0.94251 0.90442 0.91723 0.91953 0.92163 0.91347 0.92048 0.85950 0.92370 0.87986 0.90229 0.90758 0.91410 0.91208 0.90400 0.89044 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 8.64 37.16 0.32 -2.81 16 2 C 0.18 3.75 1.83 -67.92 -0.12 3.63 16 3 H 0.06 1.31 6.36 -51.93 -0.33 0.98 16 4 N -0.69 -17.78 3.23 -53.42 -0.17 -17.95 16 5 C -0.18 -5.20 8.24 -15.05 -0.12 -5.33 16 6 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 7 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 8 N -0.94 -29.62 13.06 55.49 0.72 -28.90 16 9 Si 0.90 23.44 29.55 -169.99 -5.02 18.42 16 10 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 11 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 C 0.15 2.61 2.62 -67.59 -0.18 2.43 16 14 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 15 C -0.13 -1.76 4.41 -26.61 -0.12 -1.87 16 16 C -0.12 -1.40 5.89 -26.69 -0.16 -1.56 16 17 C -0.13 -1.58 6.06 -26.84 -0.16 -1.74 16 18 C 0.08 1.19 6.30 -3.94 -0.02 1.17 16 19 N -0.60 -10.75 2.98 -166.40 -0.50 -11.24 16 20 C 0.55 11.22 7.46 -12.11 -0.09 11.13 16 21 O -0.41 -9.75 8.98 5.37 0.05 -9.70 16 22 C 0.01 0.19 6.93 -82.82 -0.57 -0.38 16 23 N -0.35 -5.69 8.56 33.29 0.28 -5.40 16 24 O 0.10 1.47 11.18 19.20 0.21 1.68 16 25 C -0.05 -0.62 7.38 -35.38 -0.26 -0.88 16 26 C -0.15 -2.38 6.04 -104.91 -0.63 -3.01 16 27 C -0.05 -0.76 5.71 -27.91 -0.16 -0.92 16 28 C -0.12 -1.44 5.92 -26.40 -0.16 -1.59 16 29 C -0.12 -1.02 5.88 -26.46 -0.16 -1.18 16 30 C -0.03 -0.28 6.31 -27.71 -0.17 -0.46 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 1.12 8.02 -51.93 -0.42 0.71 16 33 H 0.04 0.59 6.44 -51.93 -0.33 0.26 16 34 H 0.38 10.65 7.69 -40.82 -0.31 10.33 16 35 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.08 0.99 6.70 -51.93 -0.35 0.64 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.12 1.89 3.76 -73.33 -0.28 1.61 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.10 2.00 7.75 -51.93 -0.40 1.60 16 45 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 48 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 49 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 51 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -33.03 384.90 -9.79 -42.83 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -8.31 Total: 8.71 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -2.87 Total: -4.24 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: 0.34 Total: -63.50 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.26 Total: -8.02 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.02 Total: 18.42 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.03 -9.79 -42.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752159946.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.698 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds