Wall clock time and date at job start Wed Apr 1 2020 04:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47758 * 2 1 4 4 N 1.46504 * 109.47086 * 120.00283 * 2 1 3 5 5 C 1.36942 * 119.99280 * 285.41288 * 4 2 1 6 6 H 1.07998 * 119.99987 * 359.97438 * 5 4 2 7 7 C 1.38819 * 119.99700 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99764 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 119.99827 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47175 * 89.99964 * 9 7 5 11 11 H 1.48505 * 109.47264 * 210.00039 * 9 7 5 12 12 H 1.48502 * 109.47408 * 329.99726 * 9 7 5 13 13 C 1.53007 * 109.47048 * 239.99459 * 2 1 3 14 14 H 1.09000 * 109.70231 * 287.35750 * 13 2 1 15 15 C 1.53192 * 109.58530 * 47.71764 * 13 2 1 16 16 C 1.53037 * 109.31124 * 174.42161 * 15 13 2 17 17 C 1.53038 * 109.53673 * 298.63083 * 16 15 13 18 18 C 1.52759 * 109.38399 * 61.24187 * 17 16 15 19 19 N 1.46921 * 109.00898 * 305.58831 * 18 17 16 20 20 C 1.34775 * 120.63217 * 233.58390 * 19 18 17 21 21 O 1.21496 * 120.00273 * 184.57155 * 20 19 18 22 22 C 1.48337 * 119.99657 * 4.56570 * 20 19 18 23 23 N 1.31492 * 127.15784 * 353.91057 * 22 20 19 24 24 O 1.21424 * 111.52783 * 180.02562 * 23 22 20 25 25 C 1.33185 * 111.57091 * 359.94645 * 24 23 22 26 26 C 1.35377 * 106.63348 * 0.09014 * 25 24 23 27 27 C 1.50069 * 124.93581 * 179.88651 * 26 25 24 28 28 C 1.53546 * 108.23258 * 343.92063 * 27 26 25 29 29 C 1.53102 * 109.50637 * 49.19176 * 28 27 26 30 30 C 1.50598 * 129.60465 * 180.24642 * 25 24 23 31 31 H 1.08996 * 109.47118 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46796 * 300.00305 * 1 2 3 33 33 H 1.08999 * 109.46964 * 60.00201 * 1 2 3 34 34 H 0.96992 * 120.00336 * 105.41179 * 4 2 1 35 35 H 0.97004 * 119.99648 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.49451 * 294.37091 * 15 13 2 37 37 H 1.09002 * 109.49748 * 54.43466 * 15 13 2 38 38 H 1.08993 * 109.46010 * 58.65591 * 16 15 13 39 39 H 1.09001 * 109.45592 * 178.60933 * 16 15 13 40 40 H 1.09008 * 109.49465 * 181.32031 * 17 16 15 41 41 H 1.08997 * 109.49968 * 301.38451 * 17 16 15 42 42 H 1.09002 * 109.51217 * 185.70192 * 18 17 16 43 43 H 1.09001 * 109.43073 * 65.42301 * 18 17 16 44 44 H 1.09000 * 109.70678 * 224.23923 * 27 26 25 45 45 H 1.08993 * 109.71028 * 103.60507 * 27 26 25 46 46 H 1.08998 * 109.46050 * 169.20211 * 28 27 26 47 47 H 1.09001 * 109.46349 * 289.17853 * 28 27 26 48 48 H 1.08998 * 109.42958 * 50.22680 * 29 28 27 49 49 H 1.09006 * 109.42818 * 170.06578 * 29 28 27 50 50 H 1.08999 * 109.69577 * 282.82734 * 30 25 24 51 51 H 1.09005 * 109.69773 * 43.37607 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.9493 -0.0758 2.4178 6 1 1.5353 0.9184 2.4994 7 6 2.4125 -0.7300 3.5512 8 7 2.9175 -1.9413 3.4517 9 14 2.3191 0.1090 5.2175 10 1 1.0219 -0.2158 5.8632 11 1 3.4327 -0.3692 6.0757 12 1 2.4284 1.5792 5.0384 13 6 2.0400 -0.7214 -1.2492 14 1 1.8739 -1.7939 -1.1478 15 6 1.2957 -0.2007 -2.4828 16 6 1.9047 -0.8227 -3.7414 17 6 3.3746 -0.4122 -3.8553 18 6 4.1414 -0.9303 -2.6399 19 7 3.4759 -0.4592 -1.4177 20 6 4.1680 0.2059 -0.4716 21 8 3.6270 0.5174 0.5706 22 6 5.5905 0.5573 -0.7029 23 7 6.3422 0.1975 -1.7200 24 8 7.4668 0.6452 -1.6233 25 6 7.6113 1.3710 -0.5160 26 6 6.4177 1.3458 0.1224 27 6 6.1241 2.0344 1.4230 28 6 7.4601 2.4048 2.0829 29 6 8.3559 3.1115 1.0620 30 6 8.8198 2.1083 -0.0022 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.3905 -1.5834 1.1228 35 1 3.2415 -2.3983 4.2436 36 1 0.2428 -0.4743 -2.4147 37 1 1.3872 0.8844 -2.5318 38 1 1.8347 -1.9087 -3.6801 39 1 1.3609 -0.4729 -4.6189 40 1 3.8014 -0.8364 -4.7642 41 1 3.4470 0.6747 -3.8922 42 1 5.1641 -0.5544 -2.6672 43 1 4.1501 -2.0202 -2.6542 44 1 5.5651 1.3640 2.0759 45 1 5.5427 2.9375 1.2378 46 1 7.2764 3.0698 2.9267 47 1 7.9547 1.4995 2.4350 48 1 7.7963 3.9151 0.5834 49 1 9.2254 3.5289 1.5700 50 1 9.5209 1.4009 0.4406 51 1 9.3026 2.6391 -0.8227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752159946.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:40 Heat of formation + Delta-G solvation = 59.165510 kcal Electronic energy + Delta-G solvation = -33405.205891 eV Core-core repulsion = 29308.924720 eV Total energy + Delta-G solvation = -4096.281171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -46.10527 -41.51459 -38.76002 -38.15356 -37.08514 -35.00478 -34.04036 -33.64125 -31.99607 -31.59296 -31.11671 -29.42308 -27.21284 -26.04883 -25.41605 -24.65893 -24.06981 -23.67657 -21.85620 -21.49430 -20.87937 -20.08488 -18.92703 -18.79529 -18.16719 -17.55457 -16.93726 -16.74993 -16.03222 -15.92354 -15.60163 -15.54711 -15.13228 -14.93627 -14.85831 -14.68124 -14.64768 -14.30021 -14.19756 -14.10336 -13.92443 -13.62356 -13.49052 -13.26584 -12.99948 -12.81390 -12.72858 -12.64210 -12.33185 -12.15514 -11.89641 -11.86210 -11.83296 -11.76378 -11.59767 -11.55681 -11.32235 -11.21609 -11.11155 -10.75815 -10.17248 -10.07536 -9.49000 -8.60777 -7.77615 -4.96009 0.12653 0.72941 1.42152 1.44363 1.52233 1.80653 2.03875 2.32680 2.64425 2.92040 3.47444 3.55650 3.66478 3.74661 3.80661 3.95422 3.99196 4.02696 4.05286 4.11351 4.20288 4.25299 4.31436 4.34561 4.42269 4.49191 4.54131 4.57222 4.70855 4.82790 4.87084 4.88158 4.94240 4.96499 4.98817 5.00765 5.03454 5.09351 5.12665 5.16580 5.18550 5.23813 5.34767 5.36412 5.40971 5.44286 5.51025 5.60567 5.85751 6.42426 6.45986 7.02494 7.37010 7.49507 8.25291 8.49567 9.47865 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007402 B = 0.006195 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3781.806906 B = 4519.040653 C = 7674.068762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.179 3.821 3 H 0.035 0.965 4 N -0.697 5.697 5 C -0.165 4.165 6 H 0.056 0.944 7 C -0.091 4.091 8 N -0.981 5.981 9 Si 0.956 3.044 10 H -0.292 1.292 11 H -0.301 1.301 12 H -0.277 1.277 13 C 0.149 3.851 14 H 0.057 0.943 15 C -0.119 4.119 16 C -0.114 4.114 17 C -0.122 4.122 18 C 0.074 3.926 19 N -0.600 5.600 20 C 0.541 3.459 21 O -0.462 6.462 22 C -0.023 4.023 23 N -0.348 5.348 24 O 0.118 5.882 25 C -0.017 4.017 26 C -0.180 4.180 27 C -0.043 4.043 28 C -0.120 4.120 29 C -0.110 4.110 30 C -0.031 4.031 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.361 0.639 35 H 0.240 0.760 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.120 0.880 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.071 0.929 49 H 0.114 0.886 50 H 0.114 0.886 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.723 9.322 -16.686 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.071 3.929 3 H 0.052 0.948 4 N -0.335 5.335 5 C -0.298 4.298 6 H 0.074 0.926 7 C -0.281 4.281 8 N -0.636 5.636 9 Si 0.788 3.212 10 H -0.220 1.220 11 H -0.228 1.228 12 H -0.203 1.203 13 C 0.046 3.954 14 H 0.075 0.925 15 C -0.158 4.158 16 C -0.152 4.152 17 C -0.160 4.160 18 C -0.049 4.049 19 N -0.336 5.336 20 C 0.325 3.675 21 O -0.330 6.330 22 C -0.180 4.180 23 N -0.057 5.057 24 O 0.051 5.949 25 C -0.082 4.082 26 C -0.186 4.186 27 C -0.081 4.081 28 C -0.157 4.157 29 C -0.147 4.147 30 C -0.069 4.069 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.096 0.904 34 H 0.192 0.808 35 H 0.048 0.952 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.075 0.925 42 H 0.137 0.863 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.091 0.909 46 H 0.101 0.899 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.132 0.868 50 H 0.132 0.868 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.121 8.928 -17.043 21.740 hybrid contribution -0.328 -0.216 2.057 2.094 sum 9.793 8.712 -14.986 19.909 Atomic orbital electron populations 1.22402 0.97357 1.01029 1.00872 1.20517 0.91919 0.95358 0.85121 0.94773 1.42362 1.72160 1.16310 1.02643 1.19185 1.27934 0.97162 0.85547 0.92558 1.25212 1.04527 0.97858 1.00467 1.69819 1.51466 1.14530 1.27761 0.85340 0.76443 0.77885 0.81551 1.21969 1.22809 1.20300 1.21517 0.79043 0.98732 0.96067 0.92489 1.21986 1.00155 1.00664 0.92988 1.21537 0.95278 1.00902 0.97461 1.21766 0.96037 1.00970 0.97257 1.22528 0.99703 0.99159 0.83487 1.47830 1.09415 1.56391 1.19986 1.17673 0.83780 0.81656 0.84400 1.91318 1.66805 1.50521 1.24354 1.23487 0.97625 1.02384 0.94516 1.74106 0.91709 1.18670 1.21184 1.84607 1.24737 1.48454 1.37069 1.24800 0.99379 0.97175 0.86859 1.20865 0.93261 1.03597 1.00837 1.19895 0.99171 0.98496 0.90527 1.21719 0.93647 1.01334 0.99047 1.21660 1.00764 0.97028 0.95257 1.20599 0.89615 0.97035 0.99641 0.93525 0.94785 0.90411 0.80777 0.95156 0.88800 0.91927 0.91476 0.89229 0.88522 0.92501 0.86322 0.92219 0.93553 0.90936 0.89908 0.91884 0.91057 0.86752 0.86842 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.87 8.64 71.98 0.62 -5.25 16 2 C 0.18 7.79 1.83 44.99 0.08 7.87 16 3 H 0.03 1.67 6.36 -2.39 -0.02 1.65 16 4 N -0.70 -38.07 3.23 -322.92 -1.04 -39.11 16 5 C -0.17 -9.94 8.24 84.03 0.69 -9.25 16 6 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 7 C -0.09 -5.68 5.50 84.86 0.47 -5.21 16 8 N -0.98 -64.98 13.06 21.65 0.28 -64.70 16 9 Si 0.96 50.56 29.55 68.60 2.03 52.58 16 10 H -0.29 -15.08 7.11 99.48 0.71 -14.37 16 11 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16 12 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 13 C 0.15 5.34 2.62 44.98 0.12 5.46 16 14 H 0.06 2.16 8.11 -2.39 -0.02 2.14 16 15 C -0.12 -3.07 4.41 30.67 0.14 -2.94 16 16 C -0.11 -2.32 5.89 30.62 0.18 -2.14 16 17 C -0.12 -2.67 6.06 30.53 0.19 -2.48 16 18 C 0.07 2.15 6.30 86.22 0.54 2.70 16 19 N -0.60 -22.15 2.98 -798.67 -2.38 -24.53 16 20 C 0.54 23.59 7.46 86.93 0.65 24.24 16 21 O -0.46 -23.82 8.98 -3.70 -0.03 -23.85 16 22 C -0.02 -0.89 6.93 42.55 0.30 -0.60 16 23 N -0.35 -11.31 8.56 -48.95 -0.42 -11.72 16 24 O 0.12 3.21 11.18 78.74 0.88 4.09 16 25 C -0.02 -0.43 7.38 24.99 0.18 -0.24 16 26 C -0.18 -6.07 6.04 -20.05 -0.12 -6.19 16 27 C -0.04 -1.45 5.71 29.83 0.17 -1.28 16 28 C -0.12 -2.73 5.92 30.81 0.18 -2.55 16 29 C -0.11 -1.55 5.88 30.77 0.18 -1.37 16 30 C -0.03 -0.43 6.31 29.96 0.19 -0.24 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.03 1.39 8.02 -2.39 -0.02 1.37 16 33 H 0.08 2.28 6.44 -2.39 -0.02 2.26 16 34 H 0.36 21.73 7.69 -92.71 -0.71 21.02 16 35 H 0.24 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.09 2.12 6.70 -2.39 -0.02 2.11 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.12 3.62 3.76 -44.65 -0.17 3.46 16 43 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.05 2.04 7.75 -2.39 -0.02 2.02 16 45 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 47 H 0.06 1.49 8.12 -2.39 -0.02 1.47 16 48 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 49 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 50 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.13 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -79.50 384.90 4.14 -75.36 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.07 Total: 31.37 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 4.75 Total: 0.53 kcal Atomic # 7 Polarization: -136.51 SS G_CDS: -3.56 Total: -140.07 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: 0.85 Total: -19.76 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.03 Total: 52.58 kcal Total: -79.50 4.14 -75.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752159946.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.522 kcal (2) G-P(sol) polarization free energy of solvation -79.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds