Wall clock time and date at job start Wed Apr 1 2020 04:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47205 * 2 1 4 4 N 1.46499 * 109.47311 * 239.99592 * 2 1 3 5 5 C 1.34781 * 119.99719 * 85.00117 * 4 2 1 6 6 O 1.21615 * 119.99934 * 359.97438 * 5 4 2 7 7 C 1.43198 * 119.99746 * 179.97438 * 5 4 2 8 8 C 4.88626 * 107.70364 * 254.46277 * 2 1 3 9 9 C 6.32542 * 108.20874 * 251.15588 * 2 1 3 10 10 C 1.53002 * 117.50219 * 2.94358 * 9 8 7 11 11 C 1.52994 * 117.50270 * 71.60568 * 9 8 7 12 12 C 1.53001 * 109.47038 * 119.99812 * 2 1 3 13 13 H 1.08995 * 109.50415 * 60.00036 * 12 2 1 14 14 C 1.53120 * 109.50427 * 299.92180 * 12 2 1 15 15 C 1.53119 * 109.16153 * 182.44224 * 14 12 2 16 16 C 1.53035 * 109.30921 * 57.59664 * 15 14 12 17 17 N 1.46847 * 109.52260 * 300.84049 * 16 15 14 18 18 C 1.46902 * 111.00014 * 185.83585 * 17 16 15 19 19 C 1.50704 * 109.47064 * 169.43500 * 18 17 16 20 20 O 1.21296 * 120.00005 * 353.78145 * 19 18 17 21 21 N 1.34779 * 120.00048 * 173.78819 * 19 18 17 22 22 C 1.37093 * 120.00023 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00307 * 359.97438 * 22 21 19 24 24 C 1.38956 * 120.00124 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99547 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00089 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47353 * 60.00101 * 26 24 22 28 28 H 1.48494 * 109.47324 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.47150 * 300.00406 * 26 24 22 30 30 C 1.46850 * 111.19849 * 61.74601 * 17 16 15 31 31 H 1.08999 * 109.47657 * 300.00283 * 1 2 3 32 32 H 1.08993 * 109.47185 * 60.00378 * 1 2 3 33 33 H 1.09002 * 109.46861 * 180.02562 * 1 2 3 34 34 H 0.96996 * 120.00014 * 265.00081 * 4 2 1 35 35 H 1.09000 * 115.55084 * 217.27443 * 9 8 7 36 36 H 1.09002 * 117.50021 * 215.00593 * 10 9 8 37 37 H 1.09000 * 117.49819 * 0.02562 * 10 9 8 38 38 H 1.08999 * 117.49640 * 359.97438 * 11 9 8 39 39 H 1.08997 * 117.50368 * 144.97336 * 11 9 8 40 40 H 1.09000 * 109.52192 * 302.31078 * 14 12 2 41 41 H 1.09000 * 109.52230 * 62.49849 * 14 12 2 42 42 H 1.09000 * 109.47165 * 297.65533 * 15 14 12 43 43 H 1.09001 * 109.53919 * 177.57613 * 15 14 12 44 44 H 1.09000 * 109.46778 * 180.82534 * 16 15 14 45 45 H 1.09003 * 109.46654 * 60.85801 * 16 15 14 46 46 H 1.08998 * 109.47746 * 289.43475 * 18 17 16 47 47 H 1.09004 * 109.46883 * 49.43312 * 18 17 16 48 48 H 0.97001 * 119.99880 * 359.97438 * 21 19 18 49 49 H 0.96992 * 119.99639 * 180.02562 * 25 24 22 50 50 H 1.08993 * 109.46352 * 178.24375 * 30 17 16 51 51 H 1.09000 * 109.45529 * 58.25966 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8574 1.1615 -2.4119 7 6 2.6250 -0.6933 -3.5261 8 6 3.0159 -1.2469 -4.4848 9 6 3.5066 -1.9408 -5.6866 10 6 2.6026 -3.0099 -6.3037 11 6 2.7854 -1.6626 -7.0069 12 6 2.0400 -0.7212 1.2493 13 1 1.6769 -1.7489 1.2498 14 6 1.5316 0.0012 2.5000 15 6 2.0960 -0.6903 3.7441 16 6 3.6247 -0.6899 3.6736 17 7 4.0602 -1.3936 2.4605 18 6 5.5222 -1.5337 2.4294 19 6 5.9130 -2.4751 1.3193 20 8 5.0569 -3.0667 0.6962 21 7 7.2139 -2.6598 1.0190 22 6 7.5695 -3.5166 0.0096 23 1 6.8073 -4.0439 -0.5448 24 6 8.9107 -3.7066 -0.3003 25 7 9.8382 -3.0653 0.3745 26 14 9.3951 -4.8734 -1.6762 27 1 8.7941 -4.4102 -2.9527 28 1 10.8742 -4.8992 -1.8056 29 1 8.9021 -6.2389 -1.3638 30 6 3.5704 -0.7199 1.2511 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.2491 -1.6318 -1.1525 35 1 4.5830 -2.1076 -5.7266 36 1 3.0843 -3.8801 -6.7496 37 1 1.6444 -3.1992 -5.8200 38 1 1.9473 -0.9661 -6.9855 39 1 3.3873 -1.6461 -7.9155 40 1 1.8614 1.0399 2.4800 41 1 0.4425 -0.0357 2.5245 42 1 1.7338 -1.7176 3.7846 43 1 1.7728 -0.1550 4.6369 44 1 4.0290 -1.1946 4.5510 45 1 3.9869 0.3379 3.6470 46 1 5.9772 -0.5586 2.2558 47 1 5.8694 -1.9321 3.3828 48 1 7.8986 -2.1865 1.5172 49 1 10.7743 -3.1976 0.1580 50 1 3.9350 -1.2464 0.3691 51 1 3.9326 0.3080 1.2361 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752836199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:30 Heat of formation + Delta-G solvation = -21.132974 kcal Electronic energy + Delta-G solvation = -30702.759721 eV Core-core repulsion = 26602.996547 eV Total energy + Delta-G solvation = -4099.763175 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.33892 -40.49499 -39.34103 -38.54891 -36.93386 -35.91274 -34.47770 -33.79424 -33.22892 -32.16327 -30.40164 -28.82145 -26.62554 -26.23482 -24.76535 -24.00888 -23.34856 -23.05916 -21.75614 -21.04478 -20.86492 -19.88323 -19.65206 -17.74884 -17.73782 -17.46390 -16.82265 -16.59350 -16.49868 -16.23778 -15.85070 -15.73255 -15.52052 -15.34754 -15.02067 -14.93214 -14.34256 -14.14983 -13.93816 -13.75327 -13.58876 -13.51410 -13.25184 -13.15843 -13.08578 -12.78682 -12.65891 -12.47025 -12.42996 -12.35452 -12.33245 -12.13565 -11.92084 -11.73611 -11.55100 -11.48668 -11.29263 -11.23077 -11.17003 -10.76199 -10.27944 -10.22420 -9.98889 -9.20130 -8.45631 -5.94078 0.35635 1.02570 1.39043 1.40448 1.51553 1.93630 2.06446 2.28164 2.33304 2.73777 2.92346 3.05754 3.21175 3.31887 3.71375 3.75584 3.81190 3.89515 3.95678 3.99424 4.14844 4.23875 4.29537 4.31429 4.38136 4.41707 4.43861 4.51566 4.57737 4.69992 4.70516 4.71630 4.84057 4.87558 4.90561 4.93465 5.02268 5.04906 5.06620 5.16396 5.16471 5.20278 5.34780 5.40729 5.41281 5.52236 5.90626 6.06839 6.09199 6.23507 6.27891 6.61465 6.90141 7.13630 7.57405 8.12792 8.71845 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.005363 B = 0.004459 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5219.241631 B = 6278.356998 C =10967.776911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.148 3.852 3 H 0.075 0.925 4 N -0.700 5.700 5 C 0.637 3.363 6 O -0.565 6.565 7 C -0.272 4.272 8 C -0.029 4.029 9 C -0.100 4.100 10 C -0.147 4.147 11 C -0.144 4.144 12 C -0.077 4.077 13 H 0.081 0.919 14 C -0.109 4.109 15 C -0.108 4.108 16 C 0.048 3.952 17 N -0.527 5.527 18 C 0.055 3.945 19 C 0.442 3.558 20 O -0.607 6.607 21 N -0.577 5.577 22 C -0.329 4.329 23 H 0.080 0.920 24 C -0.014 4.014 25 N -0.923 5.923 26 Si 0.991 3.009 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.270 1.270 30 C 0.063 3.937 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.410 0.590 35 H 0.147 0.853 36 H 0.131 0.869 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.133 0.867 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.036 0.964 46 H 0.056 0.944 47 H 0.111 0.889 48 H 0.394 0.606 49 H 0.277 0.723 50 H 0.058 0.942 51 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.086 4.492 -1.703 16.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.044 3.956 3 H 0.093 0.907 4 N -0.349 5.349 5 C 0.425 3.575 6 O -0.446 6.446 7 C -0.275 4.275 8 C -0.032 4.032 9 C -0.118 4.118 10 C -0.183 4.183 11 C -0.181 4.181 12 C -0.096 4.096 13 H 0.099 0.901 14 C -0.147 4.147 15 C -0.146 4.146 16 C -0.079 4.079 17 N -0.252 5.252 18 C -0.076 4.076 19 C 0.229 3.771 20 O -0.493 6.493 21 N -0.214 5.214 22 C -0.459 4.459 23 H 0.098 0.902 24 C -0.214 4.214 25 N -0.564 5.564 26 Si 0.814 3.186 27 H -0.196 1.196 28 H -0.197 1.197 29 H -0.195 1.195 30 C -0.065 4.065 31 H 0.114 0.886 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.246 0.754 35 H 0.165 0.835 36 H 0.149 0.851 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.151 0.849 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.129 0.871 48 H 0.227 0.773 49 H 0.086 0.914 50 H 0.076 0.924 51 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -16.871 4.465 -2.088 17.576 hybrid contribution 1.775 0.144 -0.346 1.814 sum -15.096 4.609 -2.434 15.971 Atomic orbital electron populations 1.22158 0.92778 1.03142 1.03140 1.21183 0.95651 0.96391 0.82404 0.90688 1.46040 1.65354 1.14666 1.08874 1.14741 0.76767 0.84774 0.81257 1.90778 1.52278 1.16075 1.85499 1.20811 1.05820 1.03252 0.97637 1.22200 0.92023 0.94635 0.94323 1.19303 1.00086 1.04719 0.87665 1.23251 1.00190 0.93619 1.01271 1.23249 1.02155 0.99016 0.93676 1.21363 0.93342 1.00673 0.94244 0.90068 1.21672 1.01855 0.98883 0.92276 1.21556 0.92921 1.01738 0.98373 1.22308 0.97585 0.96309 0.91676 1.61495 1.08674 1.52025 1.03012 1.21747 0.89758 0.97585 0.98526 1.20713 0.82459 0.86443 0.87466 1.90450 1.50113 1.52980 1.55746 1.41958 1.06255 1.40738 1.32485 1.19607 0.92476 1.21665 1.12135 0.90196 1.26035 0.94876 0.99554 1.00894 1.69674 1.01412 1.43275 1.42079 0.85023 0.77336 0.78278 0.77952 1.19571 1.19656 1.19536 1.22086 0.96043 0.94899 0.93436 0.88559 0.93508 0.91320 0.75396 0.83527 0.85119 0.88427 0.88521 0.84886 0.91558 0.88744 0.91479 0.88605 0.89781 0.94580 0.92638 0.87109 0.77285 0.91412 0.92385 0.96463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.13 71.98 0.66 -2.38 16 2 C 0.15 3.72 2.16 44.99 0.10 3.82 16 3 H 0.07 2.12 7.58 -2.39 -0.02 2.10 16 4 N -0.70 -20.89 4.39 -450.12 -1.98 -22.87 16 5 C 0.64 22.17 7.61 85.49 0.65 22.82 16 6 O -0.57 -22.36 16.75 -4.08 -0.07 -22.43 16 7 C -0.27 -9.23 13.61 30.02 0.41 -8.82 16 8 C -0.03 -0.87 13.47 31.12 0.42 -0.45 16 9 C -0.10 -2.12 6.21 -12.60 -0.08 -2.20 16 10 C -0.15 -2.26 10.21 30.62 0.31 -1.94 16 11 C -0.14 -2.14 10.21 30.62 0.31 -1.82 16 12 C -0.08 -1.89 1.98 -10.74 -0.02 -1.91 16 13 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 14 C -0.11 -1.94 4.86 30.67 0.15 -1.79 16 15 C -0.11 -1.92 6.09 30.65 0.19 -1.74 16 16 C 0.05 1.11 5.46 86.33 0.47 1.58 16 17 N -0.53 -16.88 4.35 -900.91 -3.92 -20.79 16 18 C 0.06 1.96 5.45 85.56 0.47 2.43 16 19 C 0.44 21.12 7.31 87.66 0.64 21.76 16 20 O -0.61 -32.72 14.28 -3.08 -0.04 -32.76 16 21 N -0.58 -29.89 5.29 -306.97 -1.62 -31.52 16 22 C -0.33 -18.69 9.68 84.04 0.81 -17.87 16 23 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 24 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 25 N -0.92 -50.33 13.05 21.67 0.28 -50.05 16 26 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 29 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 30 C 0.06 2.06 4.23 86.33 0.37 2.43 16 31 H 0.10 1.40 6.49 -2.39 -0.02 1.38 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.41 12.27 8.36 -92.71 -0.77 11.49 16 35 H 0.15 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.24 6.58 -2.39 -0.02 1.23 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.75 8.01 -2.39 -0.02 1.73 16 45 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.06 1.86 8.12 -2.39 -0.02 1.84 16 47 H 0.11 3.46 7.98 -2.39 -0.02 3.44 16 48 H 0.39 19.63 7.90 -92.71 -0.73 18.90 16 49 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 50 H 0.06 2.36 5.39 -2.39 -0.01 2.35 16 51 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -73.83 419.88 0.45 -73.38 By element: Atomic # 1 Polarization: 49.18 SS G_CDS: -0.55 Total: 48.63 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 6.32 Total: 13.62 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -7.23 Total: -125.23 kcal Atomic # 8 Polarization: -55.08 SS G_CDS: -0.11 Total: -55.20 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.83 0.45 -73.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752836199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.244 kcal (2) G-P(sol) polarization free energy of solvation -73.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds