Wall clock time and date at job start Wed Apr 1 2020 04:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46534 * 2 1 4 4 N 1.46493 * 109.47302 * 240.00049 * 2 1 3 5 5 C 1.34773 * 120.00305 * 84.99697 * 4 2 1 6 6 O 1.21617 * 120.00109 * 359.97438 * 5 4 2 7 7 C 1.43196 * 120.00188 * 180.02562 * 5 4 2 8 8 C 4.88631 * 107.70256 * 254.46423 * 2 1 3 9 9 C 6.32547 * 108.20794 * 251.15594 * 2 1 3 10 10 C 1.53006 * 117.49408 * 220.92795 * 9 8 7 11 11 C 1.52998 * 59.99967 * 252.51320 * 10 9 8 12 12 C 1.52999 * 109.47148 * 119.99306 * 2 1 3 13 13 H 1.08998 * 109.50875 * 304.92919 * 12 2 1 14 14 C 1.53120 * 109.49986 * 65.00516 * 12 2 1 15 15 C 1.53120 * 109.15835 * 177.59109 * 14 12 2 16 16 C 1.53041 * 109.28215 * 302.34563 * 15 14 12 17 17 N 1.46846 * 109.52003 * 59.17728 * 16 15 14 18 18 C 1.46901 * 110.99738 * 174.15981 * 17 16 15 19 19 C 1.50701 * 109.46921 * 66.04780 * 18 17 16 20 20 O 1.21294 * 119.99849 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99795 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99707 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99704 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00180 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00273 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47117 * 59.99412 * 26 24 22 28 28 H 1.48498 * 109.47600 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.46756 * 300.00019 * 26 24 22 30 30 C 1.46839 * 111.20112 * 298.26039 * 17 16 15 31 31 H 1.09009 * 109.46999 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47342 * 299.99737 * 1 2 3 33 33 H 1.08992 * 109.47708 * 60.00800 * 1 2 3 34 34 H 0.97003 * 119.99517 * 264.99657 * 4 2 1 35 35 H 1.09001 * 115.55068 * 6.63937 * 9 8 7 36 36 H 1.08991 * 117.50130 * 0.02562 * 10 9 8 37 37 H 1.09003 * 117.49372 * 145.02604 * 10 9 8 38 38 H 1.09001 * 117.50257 * 252.51579 * 11 10 9 39 39 H 1.09005 * 117.52145 * 107.48098 * 11 10 9 40 40 H 1.08994 * 109.52534 * 57.69187 * 14 12 2 41 41 H 1.08995 * 109.52402 * 297.49326 * 14 12 2 42 42 H 1.09001 * 109.50461 * 182.40170 * 15 14 12 43 43 H 1.09002 * 109.50357 * 62.28890 * 15 14 12 44 44 H 1.09002 * 109.45916 * 299.16269 * 16 15 14 45 45 H 1.09003 * 109.45322 * 179.19246 * 16 15 14 46 46 H 1.09002 * 109.47401 * 306.04808 * 18 17 16 47 47 H 1.09001 * 109.46874 * 186.04821 * 18 17 16 48 48 H 0.96995 * 120.00011 * 0.02562 * 21 19 18 49 49 H 0.97000 * 119.99884 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.46586 * 181.75949 * 30 17 16 51 51 H 1.09001 * 109.46136 * 301.72478 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8573 1.1616 -2.4119 7 6 2.6239 -0.6935 -3.5264 8 6 3.0158 -1.2468 -4.4849 9 6 3.5065 -1.9408 -5.6867 10 6 4.9984 -2.2746 -5.7500 11 6 4.4260 -1.1596 -6.6275 12 6 2.0400 -0.7211 1.2493 13 1 1.6067 -0.2611 2.1374 14 6 1.6354 -2.1966 1.1888 15 6 2.2008 -2.9233 2.4122 16 6 3.7218 -2.7561 2.4411 17 7 4.0573 -1.3277 2.4995 18 6 5.5036 -1.1332 2.6680 19 6 6.2228 -1.6203 1.4365 20 8 5.5924 -2.0835 0.5095 21 7 7.5663 -1.5404 1.3649 22 6 8.2205 -1.9831 0.2443 23 1 7.6592 -2.3963 -0.5807 24 6 9.6055 -1.9012 0.1706 25 7 10.2884 -1.3989 1.1748 26 14 10.4969 -2.5037 -1.3564 27 1 10.0287 -1.7361 -2.5382 28 1 11.9589 -2.3068 -1.1863 29 1 10.2116 -3.9469 -1.5590 30 6 3.5656 -0.6177 1.3119 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5136 -0.8900 34 1 2.2491 -1.6317 -1.1525 35 1 2.8120 -2.6506 -6.1362 36 1 5.6163 -1.9807 -4.9016 37 1 5.2856 -3.2043 -6.2412 38 1 4.3367 -1.3557 -7.6960 39 1 4.6671 -0.1316 -6.3568 40 1 2.0355 -2.6471 0.2805 41 1 0.5484 -2.2765 1.1879 42 1 1.9523 -3.9830 2.3531 43 1 1.7706 -2.4982 3.3190 44 1 4.1524 -3.1938 1.5405 45 1 4.1258 -3.2604 3.3190 46 1 5.8473 -1.6959 3.5360 47 1 5.7129 -0.0737 2.8158 48 1 8.0703 -1.1696 2.1060 49 1 11.2553 -1.3414 1.1231 50 1 3.8564 0.4312 1.3695 51 1 3.9971 -1.0654 0.4167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752836205.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:40 Heat of formation + Delta-G solvation = 3.811049 kcal Electronic energy + Delta-G solvation = -31228.475601 eV Core-core repulsion = 27129.794081 eV Total energy + Delta-G solvation = -4098.681521 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.25562 -39.19555 -37.77585 -37.59944 -35.55948 -33.99069 -33.03502 -32.51596 -31.33105 -31.15267 -29.25885 -27.27505 -25.27700 -24.72720 -23.70242 -22.74284 -22.60824 -22.12693 -20.79470 -19.32754 -19.15199 -18.77821 -17.87727 -16.78503 -16.26290 -16.03562 -15.46635 -15.20274 -15.09250 -14.76108 -14.64817 -14.37037 -14.10954 -14.00905 -13.81828 -13.52183 -13.28648 -12.89016 -12.74327 -12.50089 -12.42857 -12.18157 -11.97028 -11.84892 -11.72824 -11.56477 -11.36725 -11.23777 -11.15756 -11.08223 -10.62603 -10.59583 -10.48854 -10.35000 -10.29414 -10.16927 -10.13717 -10.02424 -9.78692 -9.49429 -9.22743 -9.05870 -8.03168 -7.39564 -6.48572 -3.90057 1.57834 2.13957 3.07041 3.12732 3.20055 3.23406 3.51853 3.79512 3.82055 4.10798 4.11019 4.24864 4.56930 4.73208 4.75144 4.79701 4.86156 4.97916 5.05953 5.17710 5.22152 5.26263 5.36507 5.41628 5.43230 5.59848 5.63664 5.65604 5.72456 5.76290 5.81549 5.87532 5.90368 5.91851 5.99571 6.02879 6.07682 6.12832 6.16175 6.22325 6.28856 6.40998 6.49215 6.59671 6.79939 7.21420 7.38609 7.45389 7.47208 7.50713 7.97326 8.16292 8.52522 9.09366 9.45959 9.96401 10.67862 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006157 B = 0.004382 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4546.524516 B = 6387.837017 C =10036.523647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.091 0.909 4 N -0.705 5.705 5 C 0.638 3.362 6 O -0.530 6.530 7 C -0.217 4.217 8 C -0.053 4.053 9 C -0.066 4.066 10 C -0.158 4.158 11 C -0.162 4.162 12 C -0.088 4.088 13 H 0.088 0.912 14 C -0.115 4.115 15 C -0.111 4.111 16 C 0.040 3.960 17 N -0.513 5.513 18 C 0.041 3.959 19 C 0.406 3.594 20 O -0.594 6.594 21 N -0.556 5.556 22 C -0.302 4.302 23 H 0.101 0.899 24 C 0.025 3.975 25 N -0.898 5.898 26 Si 0.929 3.071 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.273 1.273 30 C 0.036 3.964 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.406 0.594 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.393 0.607 49 H 0.273 0.727 50 H 0.061 0.939 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.294 -2.050 -3.934 15.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.109 0.891 4 N -0.357 5.357 5 C 0.424 3.576 6 O -0.408 6.408 7 C -0.220 4.220 8 C -0.055 4.055 9 C -0.084 4.084 10 C -0.195 4.195 11 C -0.199 4.199 12 C -0.107 4.107 13 H 0.106 0.894 14 C -0.153 4.153 15 C -0.148 4.148 16 C -0.088 4.088 17 N -0.235 5.235 18 C -0.091 4.091 19 C 0.192 3.808 20 O -0.481 6.481 21 N -0.191 5.191 22 C -0.432 4.432 23 H 0.119 0.881 24 C -0.177 4.177 25 N -0.538 5.538 26 Si 0.756 3.244 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.199 1.199 30 C -0.092 4.092 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.243 0.757 35 H 0.153 0.847 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.226 0.774 49 H 0.083 0.917 50 H 0.079 0.921 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.933 -1.274 -4.091 16.499 hybrid contribution 1.507 -0.840 -0.870 1.932 sum -14.426 -2.114 -4.960 15.400 Atomic orbital electron populations 1.22201 0.95053 1.02276 1.02512 1.21025 0.93847 0.97466 0.83260 0.89095 1.46026 1.66251 1.14577 1.08876 1.14623 0.77135 0.85121 0.80677 1.90827 1.50261 1.14842 1.84890 1.20635 1.03901 1.00772 0.96685 1.21344 0.93895 0.96103 0.94168 1.18899 0.94411 1.02496 0.92607 1.23158 0.92980 1.00418 1.02930 1.23110 1.01593 0.98027 0.97148 1.21479 0.96810 0.95858 0.96597 0.89354 1.21640 0.99985 0.95011 0.98650 1.21521 0.95778 0.99478 0.98069 1.22222 0.95159 0.89198 1.02176 1.62404 1.11271 1.11115 1.38751 1.22039 0.87873 1.02204 0.96988 1.21105 0.83374 0.85923 0.90385 1.90366 1.65573 1.51596 1.40606 1.42055 1.05201 1.53766 1.18032 1.19632 0.89503 1.37881 0.96187 0.88117 1.25275 0.96642 0.97184 0.98625 1.69601 1.08228 1.44829 1.31187 0.85950 0.77966 0.79314 0.81205 1.19880 1.20851 1.19878 1.22464 0.93002 0.98497 0.95243 0.92158 0.91388 0.92170 0.75687 0.84745 0.87600 0.87322 0.87505 0.88067 0.92311 0.91815 0.91995 0.91677 0.91526 0.91911 0.89437 0.89414 0.77383 0.91690 0.92078 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.24 37.16 0.34 -1.35 16 2 C 0.15 1.87 2.27 -67.93 -0.15 1.72 16 3 H 0.09 1.29 7.58 -51.92 -0.39 0.90 16 4 N -0.70 -9.83 4.41 -56.25 -0.25 -10.08 16 5 C 0.64 10.48 7.61 -14.34 -0.11 10.37 16 6 O -0.53 -10.10 16.75 5.26 0.09 -10.01 16 7 C -0.22 -3.44 13.61 -38.84 -0.53 -3.97 16 8 C -0.05 -0.74 13.47 -37.12 -0.50 -1.24 16 9 C -0.07 -0.69 6.22 -93.40 -0.58 -1.27 16 10 C -0.16 -1.60 10.21 -26.73 -0.27 -1.87 16 11 C -0.16 -1.49 10.21 -26.73 -0.27 -1.76 16 12 C -0.09 -1.10 2.17 -90.54 -0.20 -1.29 16 13 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 14 C -0.12 -1.32 4.78 -26.61 -0.13 -1.45 16 15 C -0.11 -1.33 6.09 -26.65 -0.16 -1.49 16 16 C 0.04 0.62 5.09 -3.83 -0.02 0.60 16 17 N -0.51 -8.22 4.86 -236.11 -1.15 -9.37 16 18 C 0.04 0.71 5.86 -4.97 -0.03 0.68 16 19 C 0.41 9.09 7.20 -10.98 -0.08 9.01 16 20 O -0.59 -14.55 11.20 5.55 0.06 -14.49 16 21 N -0.56 -13.68 5.29 -10.96 -0.06 -13.74 16 22 C -0.30 -8.21 9.68 -14.94 -0.14 -8.35 16 23 H 0.10 2.86 7.16 -52.49 -0.38 2.49 16 24 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 25 N -0.90 -24.08 13.05 55.50 0.72 -23.35 16 26 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 29 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 30 C 0.04 0.57 4.15 -3.84 -0.02 0.56 16 31 H 0.06 0.57 6.62 -51.92 -0.34 0.22 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.41 5.41 6.51 -40.82 -0.27 5.15 16 35 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.73 6.21 -51.93 -0.32 0.41 16 41 H 0.06 0.61 6.69 -51.93 -0.35 0.27 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.25 6.00 -51.93 -0.31 0.93 16 45 H 0.06 0.93 8.06 -51.93 -0.42 0.51 16 46 H 0.09 1.39 8.06 -51.93 -0.42 0.98 16 47 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 48 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 49 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 50 H 0.06 1.02 8.12 -51.93 -0.42 0.59 16 51 H 0.09 1.74 4.94 -51.93 -0.26 1.48 16 LS Contribution 411.53 15.07 6.20 6.20 Total: -1.00 -31.36 411.53 -10.33 -41.69 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -7.98 Total: 18.05 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -2.95 Total: -0.54 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -0.73 Total: -56.54 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: 0.15 Total: -24.50 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.36 -10.33 -41.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752836205.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.504 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds