Wall clock time and date at job start Wed Apr 1 2020 04:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35918 * 117.00085 * 2 1 4 4 C 1.39132 * 120.47148 * 0.20759 * 3 2 1 5 5 C 1.38540 * 118.36970 * 180.26426 * 4 3 2 6 6 C 1.38247 * 119.22604 * 359.75376 * 5 4 3 7 7 N 1.31854 * 120.88446 * 0.02562 * 6 5 4 8 8 C 1.31840 * 121.78011 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.66038 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46815 * 90.00024 * 9 8 7 11 11 O 1.21277 * 120.00196 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00110 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00103 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.47042 * 35.00397 * 13 12 10 15 15 C 1.52993 * 109.47667 * 275.00242 * 13 12 10 16 16 C 1.53001 * 109.46862 * 154.99926 * 13 12 10 17 17 H 1.08997 * 109.50038 * 304.94009 * 16 13 12 18 18 C 1.53046 * 109.49833 * 184.84159 * 16 13 12 19 19 C 1.53076 * 109.65799 * 178.75257 * 18 16 13 20 20 C 1.53191 * 109.29448 * 61.15177 * 19 18 16 21 21 N 1.46922 * 108.89492 * 305.57743 * 20 19 18 22 22 C 1.36942 * 120.62796 * 233.51841 * 21 20 19 23 23 H 1.08007 * 119.99636 * 151.83092 * 22 21 20 24 24 C 1.38806 * 120.00203 * 331.83144 * 22 21 20 25 25 N 1.31624 * 120.00191 * 343.08250 * 24 22 21 26 26 Si 1.86800 * 120.00146 * 163.07925 * 24 22 21 27 27 H 1.48503 * 109.47195 * 89.99708 * 26 24 22 28 28 H 1.48498 * 109.47355 * 210.00264 * 26 24 22 29 29 H 1.48504 * 109.46850 * 330.00278 * 26 24 22 30 30 C 1.46924 * 118.73925 * 53.53695 * 21 20 19 31 31 H 1.08997 * 109.47526 * 300.00133 * 1 2 3 32 32 H 1.09006 * 109.46851 * 59.99935 * 1 2 3 33 33 H 1.08993 * 109.47232 * 179.97438 * 1 2 3 34 34 H 1.08001 * 120.81733 * 0.02562 * 4 3 2 35 35 H 1.08001 * 120.38719 * 179.73165 * 5 4 3 36 36 H 1.08001 * 119.56299 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.46902 * 330.00310 * 9 8 7 38 38 H 1.09000 * 109.47407 * 210.00108 * 9 8 7 39 39 H 0.96998 * 119.99629 * 0.02562 * 12 10 9 40 40 H 1.09002 * 109.47273 * 59.99846 * 15 13 12 41 41 H 1.09000 * 109.47532 * 180.02562 * 15 13 12 42 42 H 1.09003 * 109.47016 * 300.00171 * 15 13 12 43 43 H 1.09005 * 109.45739 * 298.70799 * 18 16 13 44 44 H 1.08993 * 109.46079 * 58.67507 * 18 16 13 45 45 H 1.09001 * 109.38719 * 301.27455 * 19 18 16 46 46 H 1.09000 * 109.61874 * 181.17050 * 19 18 16 47 47 H 1.09003 * 109.58247 * 185.71821 * 20 19 18 48 48 H 1.08998 * 109.58518 * 65.43905 * 20 19 18 49 49 H 0.96995 * 120.00379 * 180.02562 * 25 24 22 50 50 H 1.09007 * 109.58325 * 66.18371 * 30 21 20 51 51 H 1.08999 * 109.58743 * 186.60123 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2979 2.3841 0.0043 5 6 1.9717 3.5946 -0.0015 6 6 3.3542 3.5976 -0.0061 7 7 4.0334 2.4675 -0.0056 8 6 3.4306 1.2950 -0.0002 9 6 4.2542 0.0330 -0.0004 10 6 4.5345 -0.3841 1.4203 11 8 4.1072 0.2780 2.3422 12 7 5.2602 -1.4929 1.6665 13 6 5.5332 -1.8980 3.0476 14 1 4.6746 -1.6555 3.6738 15 6 6.7667 -1.1540 3.5631 16 6 5.7899 -3.4055 3.0955 17 1 4.9474 -3.9325 2.6477 18 6 5.9557 -3.8495 4.5508 19 6 6.1818 -5.3625 4.6050 20 6 7.4632 -5.7105 3.8411 21 7 7.3714 -5.1597 2.4821 22 6 7.5645 -5.9624 1.3895 23 1 7.0802 -5.7260 0.4535 24 6 8.3827 -7.0796 1.4850 25 7 9.2255 -7.1943 2.4895 26 14 8.2875 -8.4206 0.1880 27 1 9.2456 -8.1199 -0.9061 28 1 8.6314 -9.7283 0.8018 29 1 6.9097 -8.4794 -0.3630 30 6 7.0687 -3.7314 2.3177 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 0.2184 2.3519 0.0082 35 1 1.4234 4.5251 -0.0027 36 1 3.8850 4.5381 -0.0111 37 1 5.1959 0.2139 -0.5186 38 1 3.7053 -0.7590 -0.5100 39 1 5.6022 -2.0222 0.9291 40 1 6.5838 -0.0799 3.5289 41 1 6.9700 -1.4557 4.5905 42 1 7.6253 -1.3964 2.9368 43 1 6.8133 -3.3402 4.9903 44 1 5.0563 -3.5966 5.1122 45 1 5.3346 -5.8716 4.1456 46 1 6.2790 -5.6810 5.6429 47 1 7.5752 -6.7935 3.7897 48 1 8.3227 -5.2782 4.3533 49 1 9.7975 -7.9748 2.5560 50 1 7.8948 -3.1358 2.7064 51 1 6.9206 -3.5086 1.2610 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752840516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:27 Heat of formation + Delta-G solvation = -24.442248 kcal Electronic energy + Delta-G solvation = -31034.455623 eV Core-core repulsion = 26934.548948 eV Total energy + Delta-G solvation = -4099.906675 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.05789 -39.64679 -38.38284 -37.90443 -35.11796 -33.37135 -32.94668 -31.73131 -30.93854 -30.42937 -28.52849 -27.89836 -27.63436 -25.28122 -24.02304 -23.13399 -22.73038 -22.11013 -20.64192 -20.00222 -18.60645 -18.34959 -17.40195 -17.17871 -16.63994 -16.47688 -16.02330 -15.56192 -15.00034 -14.86806 -14.63997 -14.34540 -14.15704 -14.09781 -13.78978 -13.58495 -13.43398 -13.15983 -13.05809 -12.60354 -12.54332 -12.31180 -12.24529 -11.93687 -11.76267 -11.71620 -11.66659 -11.55054 -10.97907 -10.87808 -10.52056 -10.44219 -10.16994 -10.10855 -10.03523 -9.85177 -9.79787 -9.70775 -9.50828 -9.36527 -8.80273 -8.56570 -8.44922 -6.63978 -5.78083 -3.20586 0.85886 1.04049 2.82864 2.89262 3.24387 3.37012 3.44367 3.46260 3.68690 4.08691 4.34181 4.43828 4.49041 4.68251 4.78991 4.84299 4.91044 5.01568 5.11882 5.14932 5.22623 5.27120 5.31710 5.43507 5.49052 5.59137 5.63193 5.73997 5.74536 5.77731 5.83364 5.92747 6.08190 6.17456 6.20895 6.28185 6.31139 6.40943 6.56134 6.62467 6.72084 6.75567 6.84295 6.90451 6.90950 7.03210 7.42170 7.69105 7.72314 7.78748 7.79558 8.41999 8.45875 9.22035 9.85861 10.42866 11.30174 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.002362 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.799200 B =11849.223368 C =12435.383895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.092 3.908 4 C -0.166 4.166 5 C -0.136 4.136 6 C 0.062 3.938 7 N -0.438 5.438 8 C 0.131 3.869 9 C -0.090 4.090 10 C 0.525 3.475 11 O -0.543 6.543 12 N -0.720 5.720 13 C 0.151 3.849 14 H 0.079 0.921 15 C -0.164 4.164 16 C -0.112 4.112 17 H 0.071 0.929 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.170 3.830 21 N -0.591 5.591 22 C -0.252 4.252 23 H 0.064 0.936 24 C 0.002 3.998 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.280 1.280 30 C 0.151 3.849 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.158 0.842 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.402 0.598 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.045 0.955 45 H 0.053 0.947 46 H 0.049 0.951 47 H 0.085 0.915 48 H 0.017 0.983 49 H 0.253 0.747 50 H 0.026 0.974 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.318 18.015 -4.233 24.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.044 3.956 4 C -0.193 4.193 5 C -0.156 4.156 6 C -0.094 4.094 7 N -0.147 5.147 8 C -0.010 4.010 9 C -0.130 4.130 10 C 0.310 3.690 11 O -0.420 6.420 12 N -0.372 5.372 13 C 0.047 3.953 14 H 0.097 0.903 15 C -0.223 4.223 16 C -0.133 4.133 17 H 0.090 0.910 18 C -0.139 4.139 19 C -0.181 4.181 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.382 4.382 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.205 1.205 30 C 0.025 3.975 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.238 0.762 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.103 0.897 48 H 0.035 0.965 49 H 0.063 0.937 50 H 0.044 0.956 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.514 18.161 -3.548 24.148 hybrid contribution -1.081 -0.788 -0.936 1.632 sum -16.595 17.374 -4.484 24.441 Atomic orbital electron populations 1.23115 0.78150 1.04453 1.01221 1.86123 1.21525 1.25852 1.88189 1.19846 0.93088 0.85226 0.97402 1.21648 1.00679 0.92146 1.04778 1.21958 0.95771 0.98163 0.99671 1.22594 0.91424 0.96306 0.99116 1.67458 1.40007 0.97499 1.09747 1.19940 0.87712 0.93397 0.99902 1.20478 1.01814 0.94534 0.96201 1.20203 0.77727 0.80525 0.90523 1.90677 1.51803 1.53264 1.46231 1.46137 1.54453 1.27056 1.09557 1.20988 0.97917 0.94449 0.81959 0.90269 1.22254 0.98319 0.99983 1.01698 1.21941 1.01206 0.92115 0.98022 0.91018 1.21422 1.00279 0.97284 0.94865 1.22184 1.01732 0.94754 0.99468 1.20773 0.90980 1.00344 0.83494 1.44018 1.82217 1.02649 1.02454 1.19143 1.22229 1.05487 0.91338 0.91818 1.25036 0.95919 1.00696 0.97977 1.70035 1.23079 1.29092 1.32396 0.86332 0.77781 0.81738 0.81116 1.21419 1.21605 1.20521 1.21000 0.92794 0.87087 0.96643 0.92550 0.92635 0.87788 0.84374 0.84581 0.82464 0.86880 0.86876 0.76231 0.92933 0.91584 0.91577 0.92280 0.93633 0.92868 0.93251 0.89670 0.96484 0.93663 0.95649 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.83 101.05 0.99 1.17 16 2 O -0.31 -3.35 9.54 -19.48 -0.19 -3.53 16 3 C 0.09 1.08 6.67 -39.08 -0.26 0.82 16 4 C -0.17 -1.54 9.14 -39.14 -0.36 -1.90 16 5 C -0.14 -1.15 10.11 -39.47 -0.40 -1.55 16 6 C 0.06 0.64 11.18 -17.54 -0.20 0.44 16 7 N -0.44 -5.75 10.27 -9.35 -0.10 -5.85 16 8 C 0.13 1.71 5.29 -82.42 -0.44 1.27 16 9 C -0.09 -1.07 5.78 -29.03 -0.17 -1.24 16 10 C 0.52 7.75 7.79 -10.98 -0.09 7.66 16 11 O -0.54 -9.95 15.70 5.56 0.09 -9.87 16 12 N -0.72 -10.03 5.01 -53.81 -0.27 -10.30 16 13 C 0.15 2.30 2.35 -67.94 -0.16 2.14 16 14 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 15 C -0.16 -2.44 8.76 37.15 0.33 -2.12 16 16 C -0.11 -1.88 2.28 -90.50 -0.21 -2.09 16 17 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 18 C -0.10 -1.68 4.88 -26.67 -0.13 -1.81 16 19 C -0.14 -2.70 6.09 -26.59 -0.16 -2.86 16 20 C 0.17 4.01 5.30 -3.71 -0.02 3.99 16 21 N -0.59 -14.39 3.00 -172.32 -0.52 -14.91 16 22 C -0.25 -6.76 9.58 -15.06 -0.14 -6.90 16 23 H 0.06 1.66 7.89 -52.48 -0.41 1.25 16 24 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 25 N -0.90 -25.94 11.20 55.49 0.62 -25.32 16 26 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 30 C 0.15 2.99 5.26 -3.71 -0.02 2.97 16 31 H 0.06 0.34 7.69 -51.93 -0.40 -0.06 16 32 H 0.06 0.28 7.71 -51.93 -0.40 -0.13 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.14 0.88 6.45 -52.49 -0.34 0.55 16 35 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.11 1.15 7.51 -51.93 -0.39 0.76 16 39 H 0.40 5.03 7.27 -40.82 -0.30 4.73 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.94 6.59 -51.93 -0.34 0.60 16 42 H 0.07 1.00 6.23 -51.93 -0.32 0.68 16 43 H 0.06 0.98 6.62 -51.93 -0.34 0.64 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 50 H 0.03 0.52 6.06 -51.93 -0.31 0.21 16 51 H 0.05 0.90 6.75 -51.93 -0.35 0.55 16 LS Contribution 400.79 15.07 6.04 6.04 Total: -1.00 -33.91 400.79 -8.84 -42.76 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.98 Total: 4.65 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.51 Total: -0.04 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.26 Total: -56.37 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.10 Total: -13.40 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.91 -8.84 -42.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752840516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.313 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds