Wall clock time and date at job start Wed Apr 1 2020 04:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35918 * 117.00085 * 2 1 4 4 C 1.39132 * 120.47148 * 0.20759 * 3 2 1 5 5 C 1.38540 * 118.36970 * 180.26426 * 4 3 2 6 6 C 1.38247 * 119.22604 * 359.75376 * 5 4 3 7 7 N 1.31854 * 120.88446 * 0.02562 * 6 5 4 8 8 C 1.31840 * 121.78011 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.66038 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46815 * 90.00024 * 9 8 7 11 11 O 1.21277 * 120.00196 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00110 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00103 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.47042 * 35.00397 * 13 12 10 15 15 C 1.52993 * 109.47667 * 275.00242 * 13 12 10 16 16 C 1.53001 * 109.46862 * 154.99926 * 13 12 10 17 17 H 1.08997 * 109.50038 * 304.94009 * 16 13 12 18 18 C 1.53046 * 109.49833 * 184.84159 * 16 13 12 19 19 C 1.53076 * 109.65799 * 178.75257 * 18 16 13 20 20 C 1.53191 * 109.29448 * 61.15177 * 19 18 16 21 21 N 1.46922 * 108.89492 * 305.57743 * 20 19 18 22 22 C 1.36942 * 120.62796 * 233.51841 * 21 20 19 23 23 H 1.08007 * 119.99636 * 151.83092 * 22 21 20 24 24 C 1.38806 * 120.00203 * 331.83144 * 22 21 20 25 25 N 1.31624 * 120.00191 * 343.08250 * 24 22 21 26 26 Si 1.86800 * 120.00146 * 163.07925 * 24 22 21 27 27 H 1.48503 * 109.47195 * 89.99708 * 26 24 22 28 28 H 1.48498 * 109.47355 * 210.00264 * 26 24 22 29 29 H 1.48504 * 109.46850 * 330.00278 * 26 24 22 30 30 C 1.46924 * 118.73925 * 53.53695 * 21 20 19 31 31 H 1.08997 * 109.47526 * 300.00133 * 1 2 3 32 32 H 1.09006 * 109.46851 * 59.99935 * 1 2 3 33 33 H 1.08993 * 109.47232 * 179.97438 * 1 2 3 34 34 H 1.08001 * 120.81733 * 0.02562 * 4 3 2 35 35 H 1.08001 * 120.38719 * 179.73165 * 5 4 3 36 36 H 1.08001 * 119.56299 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.46902 * 330.00310 * 9 8 7 38 38 H 1.09000 * 109.47407 * 210.00108 * 9 8 7 39 39 H 0.96998 * 119.99629 * 0.02562 * 12 10 9 40 40 H 1.09002 * 109.47273 * 59.99846 * 15 13 12 41 41 H 1.09000 * 109.47532 * 180.02562 * 15 13 12 42 42 H 1.09003 * 109.47016 * 300.00171 * 15 13 12 43 43 H 1.09005 * 109.45739 * 298.70799 * 18 16 13 44 44 H 1.08993 * 109.46079 * 58.67507 * 18 16 13 45 45 H 1.09001 * 109.38719 * 301.27455 * 19 18 16 46 46 H 1.09000 * 109.61874 * 181.17050 * 19 18 16 47 47 H 1.09003 * 109.58247 * 185.71821 * 20 19 18 48 48 H 1.08998 * 109.58518 * 65.43905 * 20 19 18 49 49 H 0.96995 * 120.00379 * 180.02562 * 25 24 22 50 50 H 1.09007 * 109.58325 * 66.18371 * 30 21 20 51 51 H 1.08999 * 109.58743 * 186.60123 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2979 2.3841 0.0043 5 6 1.9717 3.5946 -0.0015 6 6 3.3542 3.5976 -0.0061 7 7 4.0334 2.4675 -0.0056 8 6 3.4306 1.2950 -0.0002 9 6 4.2542 0.0330 -0.0004 10 6 4.5345 -0.3841 1.4203 11 8 4.1072 0.2780 2.3422 12 7 5.2602 -1.4929 1.6665 13 6 5.5332 -1.8980 3.0476 14 1 4.6746 -1.6555 3.6738 15 6 6.7667 -1.1540 3.5631 16 6 5.7899 -3.4055 3.0955 17 1 4.9474 -3.9325 2.6477 18 6 5.9557 -3.8495 4.5508 19 6 6.1818 -5.3625 4.6050 20 6 7.4632 -5.7105 3.8411 21 7 7.3714 -5.1597 2.4821 22 6 7.5645 -5.9624 1.3895 23 1 7.0802 -5.7260 0.4535 24 6 8.3827 -7.0796 1.4850 25 7 9.2255 -7.1943 2.4895 26 14 8.2875 -8.4206 0.1880 27 1 9.2456 -8.1199 -0.9061 28 1 8.6314 -9.7283 0.8018 29 1 6.9097 -8.4794 -0.3630 30 6 7.0687 -3.7314 2.3177 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 0.2184 2.3519 0.0082 35 1 1.4234 4.5251 -0.0027 36 1 3.8850 4.5381 -0.0111 37 1 5.1959 0.2139 -0.5186 38 1 3.7053 -0.7590 -0.5100 39 1 5.6022 -2.0222 0.9291 40 1 6.5838 -0.0799 3.5289 41 1 6.9700 -1.4557 4.5905 42 1 7.6253 -1.3964 2.9368 43 1 6.8133 -3.3402 4.9903 44 1 5.0563 -3.5966 5.1122 45 1 5.3346 -5.8716 4.1456 46 1 6.2790 -5.6810 5.6429 47 1 7.5752 -6.7935 3.7897 48 1 8.3227 -5.2782 4.3533 49 1 9.7975 -7.9748 2.5560 50 1 7.8948 -3.1358 2.7064 51 1 6.9206 -3.5086 1.2610 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752840516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:25 Heat of formation + Delta-G solvation = -46.581546 kcal Electronic energy + Delta-G solvation = -31035.415655 eV Core-core repulsion = 26934.548948 eV Total energy + Delta-G solvation = -4100.866707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.84629 -40.84172 -39.43084 -39.04369 -36.64542 -34.66008 -34.16626 -32.69535 -32.29049 -32.11367 -29.70721 -28.94361 -28.28393 -27.19809 -25.33268 -23.95127 -23.83697 -23.57929 -22.10375 -21.22111 -20.09342 -19.06241 -18.70046 -18.16015 -18.06531 -17.43362 -16.84260 -16.72150 -16.60029 -16.12468 -15.80140 -15.64931 -15.30037 -15.12793 -14.94238 -14.82940 -14.67497 -14.37418 -14.08335 -14.05361 -13.92803 -13.69126 -13.33341 -13.15501 -13.02990 -12.87697 -12.75226 -12.66238 -12.34760 -12.31150 -12.27713 -12.02580 -11.93982 -11.66855 -11.48742 -11.26566 -11.06356 -10.94937 -10.60179 -10.55627 -10.49181 -10.02910 -9.32392 -8.61957 -7.83838 -5.28815 0.11476 0.31079 1.48018 1.49960 1.59048 1.69381 2.19784 2.26541 2.53458 2.85401 3.30990 3.31336 3.61015 3.64428 3.83406 3.89105 3.98995 4.01678 4.07435 4.10379 4.27769 4.34429 4.35890 4.36333 4.43962 4.48494 4.50199 4.51366 4.67545 4.70492 4.72091 4.80908 4.87661 4.91728 4.99361 5.05614 5.06907 5.12660 5.15810 5.23307 5.30919 5.36745 5.49216 5.51812 5.56757 5.62096 5.70641 5.81492 6.23821 6.42492 6.59787 7.02239 7.18431 7.28512 7.90415 8.42311 9.22359 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.002362 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.799200 B =11849.223368 C =12435.383895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.078 3.922 4 C -0.169 4.169 5 C -0.127 4.127 6 C 0.046 3.954 7 N -0.470 5.470 8 C 0.096 3.904 9 C -0.084 4.084 10 C 0.526 3.474 11 O -0.580 6.580 12 N -0.716 5.716 13 C 0.161 3.839 14 H 0.075 0.925 15 C -0.158 4.158 16 C -0.095 4.095 17 H 0.066 0.934 18 C -0.098 4.098 19 C -0.131 4.131 20 C 0.174 3.826 21 N -0.609 5.609 22 C -0.259 4.259 23 H 0.069 0.931 24 C -0.052 4.052 25 N -0.935 5.935 26 Si 0.964 3.036 27 H -0.285 1.285 28 H -0.296 1.296 29 H -0.270 1.270 30 C 0.151 3.849 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.167 0.833 35 H 0.174 0.826 36 H 0.180 0.820 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.410 0.590 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.049 0.951 46 H 0.069 0.931 47 H 0.050 0.950 48 H -0.005 1.005 49 H 0.248 0.752 50 H 0.022 0.978 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.616 19.456 -4.936 27.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.239 6.239 3 C 0.030 3.970 4 C -0.195 4.195 5 C -0.146 4.146 6 C -0.111 4.111 7 N -0.179 5.179 8 C -0.043 4.043 9 C -0.124 4.124 10 C 0.313 3.687 11 O -0.460 6.460 12 N -0.367 5.367 13 C 0.056 3.944 14 H 0.093 0.907 15 C -0.216 4.216 16 C -0.116 4.116 17 H 0.085 0.915 18 C -0.136 4.136 19 C -0.170 4.170 20 C 0.049 3.951 21 N -0.332 5.332 22 C -0.389 4.389 23 H 0.087 0.913 24 C -0.248 4.248 25 N -0.582 5.582 26 Si 0.792 3.208 27 H -0.212 1.212 28 H -0.222 1.222 29 H -0.195 1.195 30 C 0.026 3.974 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.134 0.866 34 H 0.185 0.815 35 H 0.191 0.809 36 H 0.197 0.803 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.247 0.753 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.068 0.932 48 H 0.013 0.987 49 H 0.057 0.943 50 H 0.040 0.960 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.831 19.607 -4.274 26.845 hybrid contribution -0.413 -1.141 -0.716 1.409 sum -18.245 18.467 -4.990 26.434 Atomic orbital electron populations 1.23389 0.76227 1.05746 1.02405 1.86080 1.23615 1.25941 1.88243 1.20005 0.93066 0.86270 0.97709 1.22066 1.02151 0.91598 1.03669 1.22380 0.95285 0.99467 0.97453 1.23133 0.92707 0.96400 0.98886 1.67409 1.41323 0.98354 1.10850 1.20080 0.88714 0.93570 1.01951 1.20466 1.02627 0.95079 0.94215 1.20675 0.76772 0.79897 0.91370 1.90648 1.53300 1.54404 1.47601 1.46094 1.54231 1.27068 1.09334 1.20789 0.97797 0.93102 0.82695 0.90722 1.22187 0.97833 0.99501 1.02060 1.21712 0.99097 0.93131 0.97646 0.91518 1.21416 1.01695 0.95410 0.95060 1.22016 0.98729 0.96509 0.99712 1.20599 0.92617 0.98034 0.83890 1.44280 1.82347 1.04426 1.02135 1.19513 1.21400 1.05832 0.92145 0.91308 1.25780 0.96032 1.02858 1.00090 1.70191 1.24185 1.29433 1.34373 0.85328 0.78028 0.78700 0.78700 1.21187 1.22218 1.19451 1.21119 0.93996 0.84578 0.97747 0.91990 0.90722 0.86588 0.81535 0.80880 0.80254 0.85799 0.85460 0.75344 0.93525 0.90821 0.92059 0.91950 0.90965 0.93239 0.91279 0.93156 0.98688 0.94265 0.96026 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.83 113.37 1.11 1.31 16 2 O -0.33 -6.81 9.54 -92.63 -0.88 -7.69 16 3 C 0.08 1.73 6.67 22.60 0.15 1.89 16 4 C -0.17 -2.74 9.14 22.56 0.21 -2.54 16 5 C -0.13 -1.82 10.11 22.34 0.23 -1.59 16 6 C 0.05 0.87 11.18 84.69 0.95 1.82 16 7 N -0.47 -12.16 10.27 -183.50 -1.88 -14.05 16 8 C 0.10 2.47 5.29 42.67 0.23 2.70 16 9 C -0.08 -1.97 5.78 29.10 0.17 -1.80 16 10 C 0.53 15.32 7.79 87.66 0.68 16.00 16 11 O -0.58 -21.23 15.70 -3.02 -0.05 -21.28 16 12 N -0.72 -19.31 5.01 -442.55 -2.22 -21.53 16 13 C 0.16 4.69 2.35 44.99 0.11 4.80 16 14 H 0.07 2.32 7.58 -2.39 -0.02 2.30 16 15 C -0.16 -4.53 8.76 71.98 0.63 -3.90 16 16 C -0.10 -3.07 2.28 -10.71 -0.02 -3.10 16 17 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 18 C -0.10 -3.09 4.88 30.63 0.15 -2.94 16 19 C -0.13 -4.84 6.09 30.68 0.19 -4.65 16 20 C 0.17 8.37 5.30 86.36 0.46 8.83 16 21 N -0.61 -29.83 3.00 -699.10 -2.09 -31.92 16 22 C -0.26 -13.92 9.58 84.03 0.81 -13.11 16 23 H 0.07 3.56 7.89 -2.91 -0.02 3.53 16 24 C -0.05 -2.90 4.92 84.86 0.42 -2.49 16 25 N -0.94 -55.29 11.20 21.65 0.24 -55.05 16 26 Si 0.96 44.47 29.59 68.60 2.03 46.50 16 27 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 28 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 29 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 30 C 0.15 5.89 5.26 86.36 0.45 6.34 16 31 H 0.06 0.63 7.69 -2.39 -0.02 0.61 16 32 H 0.07 0.55 7.71 -2.38 -0.02 0.53 16 33 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.17 1.59 6.45 -2.91 -0.02 1.57 16 35 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 36 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.13 2.52 7.51 -2.39 -0.02 2.50 16 39 H 0.41 9.83 7.27 -92.71 -0.67 9.16 16 40 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.99 6.59 -2.39 -0.02 1.97 16 42 H 0.06 1.81 6.23 -2.39 -0.01 1.79 16 43 H 0.06 1.96 6.62 -2.38 -0.02 1.94 16 44 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.05 2.75 6.06 -2.39 -0.01 2.74 16 48 H 0.00 -0.26 8.14 -2.39 -0.02 -0.27 16 49 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 50 H 0.02 0.88 6.06 -2.38 -0.01 0.86 16 51 H 0.05 2.03 6.75 -2.39 -0.02 2.02 16 Total: -1.00 -75.00 400.79 2.31 -72.69 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.27 Total: 24.78 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 6.90 Total: 7.55 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -5.95 Total: -122.55 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.93 Total: -28.97 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -75.00 2.31 -72.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752840516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.107 kcal (2) G-P(sol) polarization free energy of solvation -75.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds