Wall clock time and date at job start Wed Apr 1 2020 05:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.52997 * 109.47232 * 119.99925 * 2 1 3 5 5 N 1.46910 * 109.47171 * 175.00319 * 4 2 1 6 6 C 1.46898 * 110.99714 * 180.02562 * 5 4 2 7 7 C 1.50706 * 109.46695 * 180.02562 * 6 5 4 8 8 O 1.21290 * 120.00118 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99837 * 179.97438 * 7 6 5 10 10 C 1.37096 * 119.99678 * 179.97438 * 9 7 6 11 11 H 1.07995 * 120.00192 * 0.02562 * 10 9 7 12 12 C 1.38955 * 119.99738 * 179.97438 * 10 9 7 13 13 N 1.31402 * 120.00025 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99948 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47061 * 89.99414 * 14 12 10 16 16 H 1.48501 * 109.47136 * 209.99414 * 14 12 10 17 17 H 1.48497 * 109.47096 * 329.99555 * 14 12 10 18 18 N 1.46506 * 109.47289 * 239.99872 * 2 1 3 19 19 C 1.46499 * 119.99936 * 299.99999 * 18 2 1 20 20 C 1.34773 * 119.99969 * 119.71964 * 18 2 1 21 21 O 1.21281 * 120.00220 * 0.02562 * 20 18 2 22 22 C 1.50706 * 120.00080 * 180.02562 * 20 18 2 23 23 C 1.52992 * 109.47274 * 180.02562 * 22 20 18 24 24 C 1.50696 * 109.47278 * 180.02562 * 23 22 20 25 25 C 1.38240 * 119.99471 * 269.72472 * 24 23 22 26 26 C 1.38239 * 119.99771 * 179.76044 * 25 24 23 27 27 C 1.38242 * 119.99693 * 0.51214 * 26 25 24 28 28 C 1.38234 * 120.00111 * 359.74155 * 27 26 25 29 29 C 1.38233 * 120.00340 * 89.99256 * 24 23 22 30 30 H 1.08996 * 109.46952 * 60.00255 * 1 2 3 31 31 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 300.00084 * 1 2 3 33 33 H 1.09001 * 109.46992 * 294.99548 * 4 2 1 34 34 H 1.09002 * 109.47223 * 55.00179 * 4 2 1 35 35 H 1.00903 * 110.99281 * 303.95042 * 5 4 2 36 36 H 1.09004 * 109.47220 * 299.99019 * 6 5 4 37 37 H 1.08993 * 109.47657 * 59.99936 * 6 5 4 38 38 H 0.96998 * 120.00157 * 359.97438 * 9 7 6 39 39 H 0.97005 * 120.00470 * 180.02562 * 13 12 10 40 40 H 1.09003 * 109.47269 * 89.99349 * 19 18 2 41 41 H 1.08994 * 109.47173 * 210.00167 * 19 18 2 42 42 H 1.09005 * 109.47077 * 330.00338 * 19 18 2 43 43 H 1.09004 * 109.46762 * 300.00389 * 22 20 18 44 44 H 1.08998 * 109.46924 * 59.99727 * 22 20 18 45 45 H 1.09004 * 109.47116 * 299.99649 * 23 22 20 46 46 H 1.08993 * 109.47352 * 59.99893 * 23 22 20 47 47 H 1.07994 * 120.00530 * 359.97438 * 25 24 23 48 48 H 1.07998 * 120.00433 * 180.22941 * 26 25 24 49 49 H 1.08003 * 119.99496 * 179.72319 * 27 26 25 50 50 H 1.08003 * 119.99520 * 179.97438 * 28 27 26 51 51 H 1.07993 * 120.00130 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5041 -0.8266 1.1904 6 6 4.0303 -1.5158 2.3762 7 6 5.5318 -1.6041 2.2807 8 8 6.1068 -1.1392 1.3193 9 7 6.2356 -2.1998 3.2637 10 6 7.6014 -2.2807 3.1767 11 1 8.1133 -1.8667 2.3206 12 6 8.3270 -2.8944 4.1904 13 7 9.6361 -2.9714 4.1072 14 14 7.4415 -3.6098 5.6714 15 1 7.0923 -5.0279 5.4020 16 1 8.3271 -3.5355 6.8612 17 1 6.2011 -2.8349 5.9284 18 7 2.0184 -0.6907 -1.1962 19 6 1.6645 -2.0932 -1.4280 20 6 2.7885 -0.0340 -2.0862 21 8 3.0777 1.1284 -1.8966 22 6 3.2905 -0.7443 -3.3169 23 6 4.1353 0.2191 -4.1529 24 6 4.6367 -0.4909 -5.3839 25 6 5.8494 -1.1537 -5.3537 26 6 6.3071 -1.8093 -6.4814 27 6 5.5570 -1.7931 -7.6425 28 6 4.3467 -1.1258 -7.6742 29 6 3.8866 -0.4748 -6.5449 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7517 -0.1582 2.1369 34 1 1.6054 -1.7198 1.2951 35 1 3.7996 -1.2883 0.3433 36 1 3.7558 -0.9586 3.2720 37 1 3.6096 -2.5198 2.4295 38 1 5.7758 -2.5714 4.0328 39 1 10.1428 -3.4001 4.8147 40 1 0.7375 -2.1445 -1.9992 41 1 2.4629 -2.5819 -1.9862 42 1 1.5295 -2.5969 -0.4707 43 1 3.8999 -1.5981 -3.0205 44 1 2.4425 -1.0909 -3.9076 45 1 3.5262 1.0731 -4.4493 46 1 4.9832 0.5652 -3.5620 47 1 6.4377 -1.1624 -4.4481 48 1 7.2528 -2.3302 -6.4568 49 1 5.9167 -2.3015 -8.5249 50 1 3.7609 -1.1129 -8.5815 51 1 2.9414 0.0470 -6.5699 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753723765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:51 Heat of formation + Delta-G solvation = -44.678864 kcal Electronic energy + Delta-G solvation = -30132.296777 eV Core-core repulsion = 26031.512576 eV Total energy + Delta-G solvation = -4100.784201 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.28735 -39.32650 -38.44842 -36.99759 -34.68098 -34.18142 -33.80388 -31.96661 -31.61908 -31.03004 -29.60827 -27.75235 -27.07074 -25.24195 -24.77590 -23.09695 -22.71394 -21.67733 -20.72970 -19.39064 -18.98695 -18.32228 -17.54263 -16.75217 -16.45269 -16.21162 -15.90498 -15.49673 -15.14090 -15.09848 -14.85653 -14.34463 -14.09704 -13.98528 -13.74927 -13.50438 -13.31496 -13.23922 -13.14556 -12.88224 -12.74083 -12.69622 -12.66509 -12.31760 -12.23501 -11.92601 -11.86469 -11.74511 -11.54295 -11.39445 -11.19749 -11.14028 -10.97552 -10.93310 -10.59526 -9.96909 -9.74988 -9.56457 -9.07189 -8.84365 -8.83534 -8.51896 -8.18215 -8.09410 -6.30197 -3.81486 1.18727 1.25044 2.67149 2.87700 3.02752 3.06120 3.14762 3.63377 3.75404 4.05159 4.10976 4.38258 4.69056 4.73829 4.82801 4.84661 4.85064 4.87018 4.96464 5.01673 5.03745 5.09726 5.09986 5.22286 5.26116 5.32857 5.35981 5.37762 5.40107 5.47262 5.51792 5.60366 5.63831 5.73995 5.80078 5.83163 5.85540 5.93628 5.94801 6.04390 6.09932 6.31120 6.37383 6.46838 6.52585 6.86194 7.11157 7.29706 7.58363 7.60413 8.15677 8.19857 8.61062 8.96173 9.43435 9.84282 10.83027 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008669 B = 0.002567 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.165286 B =10905.334564 C =13531.656773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.136 3.864 3 H 0.111 0.889 4 C 0.049 3.951 5 N -0.663 5.663 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.562 6.562 9 N -0.592 5.592 10 C -0.304 4.304 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.880 3.120 15 H -0.272 1.272 16 H -0.276 1.276 17 H -0.269 1.269 18 N -0.614 5.614 19 C 0.073 3.927 20 C 0.518 3.482 21 O -0.528 6.528 22 C -0.132 4.132 23 C -0.067 4.067 24 C -0.080 4.080 25 C -0.113 4.113 26 C -0.118 4.118 27 C -0.127 4.127 28 C -0.122 4.122 29 C -0.119 4.119 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.028 0.972 35 H 0.349 0.651 36 H 0.087 0.913 37 H 0.042 0.958 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.126 0.874 48 H 0.122 0.878 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.407 -0.537 -16.464 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 H 0.129 0.871 4 C -0.081 4.081 5 N -0.296 5.296 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.443 6.443 9 N -0.231 5.231 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 N -0.349 5.349 19 C -0.070 4.070 20 C 0.307 3.693 21 O -0.403 6.403 22 C -0.171 4.171 23 C -0.105 4.105 24 C -0.080 4.080 25 C -0.131 4.131 26 C -0.136 4.136 27 C -0.146 4.146 28 C -0.140 4.140 29 C -0.137 4.137 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.046 0.954 35 H 0.169 0.831 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.144 0.856 48 H 0.140 0.860 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.527 0.967 -16.664 25.689 hybrid contribution -0.808 -1.827 1.210 2.336 sum -20.335 -0.861 -15.454 25.556 Atomic orbital electron populations 1.22087 0.94778 1.02152 1.02590 1.21147 0.93265 0.99051 0.83225 0.87144 1.22343 0.88882 0.98766 0.98114 1.59982 1.07635 1.57243 1.04730 1.21719 0.94880 0.96926 0.94965 1.19717 0.88027 0.83717 0.85022 1.90577 1.70989 1.49833 1.32901 1.42207 1.07869 1.53137 1.19914 1.19432 0.79587 1.35846 1.08408 0.86304 1.25037 0.95434 0.97737 0.97990 1.69619 1.05052 1.43382 1.34136 0.86672 0.79692 0.79887 0.83134 1.19702 1.20162 1.19496 1.47871 1.51808 1.12242 1.22960 1.21792 1.00954 0.81906 1.02347 1.20636 0.77490 0.87061 0.84158 1.90713 1.56454 1.16950 1.76224 1.21667 1.01035 1.00001 0.94437 1.20361 1.00471 0.96774 0.92895 1.19944 0.94800 0.97972 0.95261 1.21222 0.95926 0.97192 0.98806 1.21204 0.99903 0.99304 0.93144 1.21148 0.95276 1.00001 0.98127 1.21118 0.96505 0.98154 0.98216 1.21055 0.99782 1.00037 0.92780 0.92137 0.92469 0.91267 0.89954 0.95387 0.83070 0.89469 0.94018 0.79743 0.91632 0.92571 0.90744 0.91115 0.88555 0.89139 0.90321 0.89644 0.85573 0.85999 0.86333 0.86311 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.19 37.16 0.34 -0.90 16 2 C 0.14 1.51 2.95 -67.93 -0.20 1.31 16 3 H 0.11 1.55 6.90 -51.93 -0.36 1.19 16 4 C 0.05 0.57 4.98 -3.82 -0.02 0.55 16 5 N -0.66 -10.74 6.12 -115.05 -0.70 -11.45 16 6 C 0.05 0.81 6.17 -4.97 -0.03 0.78 16 7 C 0.45 10.43 7.82 -10.98 -0.09 10.34 16 8 O -0.56 -15.49 15.78 5.55 0.09 -15.41 16 9 N -0.59 -14.27 5.09 -10.96 -0.06 -14.33 16 10 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 11 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -25.96 13.96 55.50 0.77 -25.18 16 14 Si 0.88 19.46 27.74 -169.99 -4.71 14.74 16 15 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.27 -5.44 6.52 56.52 0.37 -5.08 16 18 N -0.61 -6.63 1.83 -173.93 -0.32 -6.95 16 19 C 0.07 0.55 9.28 59.85 0.56 1.11 16 20 C 0.52 6.75 7.67 -10.98 -0.08 6.66 16 21 O -0.53 -9.06 15.31 5.56 0.09 -8.98 16 22 C -0.13 -1.33 4.23 -27.88 -0.12 -1.44 16 23 C -0.07 -0.75 4.63 -27.89 -0.13 -0.87 16 24 C -0.08 -0.83 5.13 -104.62 -0.54 -1.37 16 25 C -0.11 -1.23 9.70 -39.58 -0.38 -1.61 16 26 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 27 C -0.13 -1.13 10.05 -39.58 -0.40 -1.52 16 28 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 29 C -0.12 -1.09 9.70 -39.58 -0.38 -1.48 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.28 6.88 -51.93 -0.36 -0.08 16 35 H 0.35 5.99 7.56 -39.29 -0.30 5.69 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.52 6.45 -51.93 -0.33 0.18 16 42 H 0.07 0.51 6.53 -51.93 -0.34 0.17 16 43 H 0.10 0.95 7.41 -51.93 -0.38 0.56 16 44 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 45 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 46 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 47 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 48 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 49 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 50 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 51 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 418.00 15.07 6.30 6.30 Total: -1.00 -35.93 418.00 -9.23 -45.16 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -8.17 Total: 15.36 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -2.52 Total: 0.74 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.30 Total: -57.91 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: 0.17 Total: -24.39 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.71 Total: 14.74 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.93 -9.23 -45.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753723765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.482 kcal (2) G-P(sol) polarization free energy of solvation -35.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds