Wall clock time and date at job start Wed Apr 1 2020 05:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.52997 * 109.47232 * 119.99925 * 2 1 3 5 5 N 1.46910 * 109.47171 * 175.00319 * 4 2 1 6 6 C 1.46898 * 110.99714 * 180.02562 * 5 4 2 7 7 C 1.50706 * 109.46695 * 180.02562 * 6 5 4 8 8 O 1.21290 * 120.00118 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99837 * 179.97438 * 7 6 5 10 10 C 1.37096 * 119.99678 * 179.97438 * 9 7 6 11 11 H 1.07995 * 120.00192 * 0.02562 * 10 9 7 12 12 C 1.38955 * 119.99738 * 179.97438 * 10 9 7 13 13 N 1.31402 * 120.00025 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99948 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47061 * 89.99414 * 14 12 10 16 16 H 1.48501 * 109.47136 * 209.99414 * 14 12 10 17 17 H 1.48497 * 109.47096 * 329.99555 * 14 12 10 18 18 N 1.46506 * 109.47289 * 239.99872 * 2 1 3 19 19 C 1.46499 * 119.99936 * 299.99999 * 18 2 1 20 20 C 1.34773 * 119.99969 * 119.71964 * 18 2 1 21 21 O 1.21281 * 120.00220 * 0.02562 * 20 18 2 22 22 C 1.50706 * 120.00080 * 180.02562 * 20 18 2 23 23 C 1.52992 * 109.47274 * 180.02562 * 22 20 18 24 24 C 1.50696 * 109.47278 * 180.02562 * 23 22 20 25 25 C 1.38240 * 119.99471 * 269.72472 * 24 23 22 26 26 C 1.38239 * 119.99771 * 179.76044 * 25 24 23 27 27 C 1.38242 * 119.99693 * 0.51214 * 26 25 24 28 28 C 1.38234 * 120.00111 * 359.74155 * 27 26 25 29 29 C 1.38233 * 120.00340 * 89.99256 * 24 23 22 30 30 H 1.08996 * 109.46952 * 60.00255 * 1 2 3 31 31 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 300.00084 * 1 2 3 33 33 H 1.09001 * 109.46992 * 294.99548 * 4 2 1 34 34 H 1.09002 * 109.47223 * 55.00179 * 4 2 1 35 35 H 1.00903 * 110.99281 * 303.95042 * 5 4 2 36 36 H 1.09004 * 109.47220 * 299.99019 * 6 5 4 37 37 H 1.08993 * 109.47657 * 59.99936 * 6 5 4 38 38 H 0.96998 * 120.00157 * 359.97438 * 9 7 6 39 39 H 0.97005 * 120.00470 * 180.02562 * 13 12 10 40 40 H 1.09003 * 109.47269 * 89.99349 * 19 18 2 41 41 H 1.08994 * 109.47173 * 210.00167 * 19 18 2 42 42 H 1.09005 * 109.47077 * 330.00338 * 19 18 2 43 43 H 1.09004 * 109.46762 * 300.00389 * 22 20 18 44 44 H 1.08998 * 109.46924 * 59.99727 * 22 20 18 45 45 H 1.09004 * 109.47116 * 299.99649 * 23 22 20 46 46 H 1.08993 * 109.47352 * 59.99893 * 23 22 20 47 47 H 1.07994 * 120.00530 * 359.97438 * 25 24 23 48 48 H 1.07998 * 120.00433 * 180.22941 * 26 25 24 49 49 H 1.08003 * 119.99496 * 179.72319 * 27 26 25 50 50 H 1.08003 * 119.99520 * 179.97438 * 28 27 26 51 51 H 1.07993 * 120.00130 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5041 -0.8266 1.1904 6 6 4.0303 -1.5158 2.3762 7 6 5.5318 -1.6041 2.2807 8 8 6.1068 -1.1392 1.3193 9 7 6.2356 -2.1998 3.2637 10 6 7.6014 -2.2807 3.1767 11 1 8.1133 -1.8667 2.3206 12 6 8.3270 -2.8944 4.1904 13 7 9.6361 -2.9714 4.1072 14 14 7.4415 -3.6098 5.6714 15 1 7.0923 -5.0279 5.4020 16 1 8.3271 -3.5355 6.8612 17 1 6.2011 -2.8349 5.9284 18 7 2.0184 -0.6907 -1.1962 19 6 1.6645 -2.0932 -1.4280 20 6 2.7885 -0.0340 -2.0862 21 8 3.0777 1.1284 -1.8966 22 6 3.2905 -0.7443 -3.3169 23 6 4.1353 0.2191 -4.1529 24 6 4.6367 -0.4909 -5.3839 25 6 5.8494 -1.1537 -5.3537 26 6 6.3071 -1.8093 -6.4814 27 6 5.5570 -1.7931 -7.6425 28 6 4.3467 -1.1258 -7.6742 29 6 3.8866 -0.4748 -6.5449 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7517 -0.1582 2.1369 34 1 1.6054 -1.7198 1.2951 35 1 3.7996 -1.2883 0.3433 36 1 3.7558 -0.9586 3.2720 37 1 3.6096 -2.5198 2.4295 38 1 5.7758 -2.5714 4.0328 39 1 10.1428 -3.4001 4.8147 40 1 0.7375 -2.1445 -1.9992 41 1 2.4629 -2.5819 -1.9862 42 1 1.5295 -2.5969 -0.4707 43 1 3.8999 -1.5981 -3.0205 44 1 2.4425 -1.0909 -3.9076 45 1 3.5262 1.0731 -4.4493 46 1 4.9832 0.5652 -3.5620 47 1 6.4377 -1.1624 -4.4481 48 1 7.2528 -2.3302 -6.4568 49 1 5.9167 -2.3015 -8.5249 50 1 3.7609 -1.1129 -8.5815 51 1 2.9414 0.0470 -6.5699 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753723765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:50 Heat of formation + Delta-G solvation = -69.860392 kcal Electronic energy + Delta-G solvation = -30133.388730 eV Core-core repulsion = 26031.512576 eV Total energy + Delta-G solvation = -4101.876154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.23378 -40.32188 -40.04781 -38.07182 -36.18511 -35.54117 -35.02251 -33.77217 -32.81255 -31.75980 -30.40024 -29.11901 -27.77665 -26.64587 -25.85477 -24.46593 -23.44807 -22.51271 -21.58652 -21.29479 -20.32348 -19.84186 -18.45124 -17.92204 -17.51180 -17.26631 -17.01223 -16.82586 -16.55566 -16.04412 -15.89240 -15.66604 -15.45579 -15.07506 -14.91129 -14.57168 -14.38653 -14.24611 -14.16917 -14.12271 -13.96093 -13.65684 -13.64608 -13.35933 -13.20861 -13.05862 -12.97015 -12.79370 -12.69065 -12.46926 -12.41699 -12.21047 -11.99649 -11.93199 -11.82077 -11.74409 -11.53262 -10.77683 -10.48663 -10.27256 -9.81677 -9.66237 -9.60553 -9.26915 -8.42925 -6.04363 0.43609 0.50496 1.29041 1.34368 1.43911 1.68304 1.93195 2.05213 2.21897 2.70328 2.88672 3.13238 3.35405 3.54820 3.90031 3.92428 3.99658 4.11760 4.13901 4.19279 4.19976 4.24051 4.28144 4.33328 4.34015 4.40034 4.51909 4.57140 4.60325 4.65965 4.69158 4.73273 4.74847 4.83319 4.92707 4.96961 5.05663 5.14429 5.18845 5.21215 5.28694 5.50808 5.59098 5.64090 5.65666 5.74249 5.88751 6.05133 6.13567 6.32611 6.42877 6.58029 6.86075 7.24380 7.37302 7.94723 8.74960 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008669 B = 0.002567 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.165286 B =10905.334564 C =13531.656773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.134 3.866 3 H 0.071 0.929 4 C 0.053 3.947 5 N -0.691 5.691 6 C 0.063 3.937 7 C 0.445 3.555 8 O -0.617 6.617 9 N -0.589 5.589 10 C -0.330 4.330 11 H 0.051 0.949 12 C -0.016 4.016 13 N -0.935 5.935 14 Si 0.968 3.032 15 H -0.254 1.254 16 H -0.275 1.275 17 H -0.231 1.231 18 N -0.610 5.610 19 C 0.066 3.934 20 C 0.508 3.492 21 O -0.583 6.583 22 C -0.121 4.121 23 C -0.061 4.061 24 C -0.089 4.089 25 C -0.137 4.137 26 C -0.128 4.128 27 C -0.130 4.130 28 C -0.121 4.121 29 C -0.121 4.121 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.339 0.661 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.390 0.610 39 H 0.280 0.720 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.122 0.878 45 H 0.076 0.924 46 H 0.050 0.950 47 H 0.110 0.890 48 H 0.131 0.869 49 H 0.143 0.857 50 H 0.147 0.853 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.801 -2.907 -15.628 29.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.030 3.970 3 H 0.089 0.911 4 C -0.076 4.076 5 N -0.324 5.324 6 C -0.069 4.069 7 C 0.233 3.767 8 O -0.501 6.501 9 N -0.231 5.231 10 C -0.459 4.459 11 H 0.070 0.930 12 C -0.215 4.215 13 N -0.575 5.575 14 Si 0.787 3.213 15 H -0.178 1.178 16 H -0.200 1.200 17 H -0.155 1.155 18 N -0.343 5.343 19 C -0.076 4.076 20 C 0.297 3.703 21 O -0.463 6.463 22 C -0.161 4.161 23 C -0.099 4.099 24 C -0.089 4.089 25 C -0.155 4.155 26 C -0.146 4.146 27 C -0.147 4.147 28 C -0.138 4.138 29 C -0.139 4.139 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.158 0.842 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.226 0.774 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.140 0.860 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.128 0.872 48 H 0.149 0.851 49 H 0.160 0.840 50 H 0.165 0.835 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.981 -1.436 -15.816 28.762 hybrid contribution 0.626 -1.039 0.823 1.466 sum -23.354 -2.475 -14.993 27.863 Atomic orbital electron populations 1.21993 0.91751 1.03641 1.02999 1.21146 0.95424 0.97058 0.83341 0.91111 1.22445 0.85927 1.00581 0.98664 1.59964 1.10811 1.57619 1.04040 1.21643 0.89250 0.99763 0.96233 1.21069 0.90951 0.81269 0.83401 1.90561 1.73003 1.51539 1.34996 1.42012 1.06121 1.53819 1.21151 1.18990 0.81989 1.37514 1.07456 0.93038 1.26164 0.96212 0.97272 1.01824 1.69808 1.07552 1.44287 1.35886 0.85333 0.79411 0.79777 0.76776 1.17810 1.20021 1.15451 1.47977 1.50659 1.13479 1.22169 1.22063 1.02304 0.79686 1.03520 1.21159 0.77306 0.86629 0.85158 1.90684 1.58657 1.19383 1.77594 1.21634 1.01783 0.99174 0.93499 1.20226 0.99337 0.97194 0.93158 1.19897 0.95073 0.98413 0.95537 1.21250 0.96512 0.98702 0.99032 1.21398 1.00625 0.99352 0.93253 1.21478 0.95207 0.99699 0.98353 1.21479 0.96482 0.97018 0.98861 1.21278 1.00300 1.00023 0.92322 0.92634 0.90287 0.90056 0.88725 0.92289 0.84184 0.86849 0.90044 0.77386 0.91091 0.89915 0.90393 0.90009 0.88466 0.86005 0.90559 0.93077 0.87163 0.85097 0.83955 0.83531 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.19 71.98 0.66 -1.23 16 2 C 0.13 2.81 2.95 44.99 0.13 2.94 16 3 H 0.07 2.07 6.90 -2.39 -0.02 2.06 16 4 C 0.05 1.08 4.98 86.30 0.43 1.51 16 5 N -0.69 -21.65 6.12 -517.91 -3.17 -24.81 16 6 C 0.06 1.97 6.17 85.56 0.53 2.49 16 7 C 0.45 20.79 7.82 87.66 0.69 21.47 16 8 O -0.62 -35.94 15.78 -3.06 -0.05 -35.99 16 9 N -0.59 -28.31 5.09 -306.98 -1.56 -29.88 16 10 C -0.33 -19.76 10.16 84.04 0.85 -18.91 16 11 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 12 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 13 N -0.93 -57.11 13.96 21.66 0.30 -56.81 16 14 Si 0.97 38.89 27.74 68.60 1.90 40.79 16 15 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 16 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 17 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 18 N -0.61 -12.65 1.83 -822.59 -1.51 -14.15 16 19 C 0.07 0.81 9.28 127.77 1.19 2.00 16 20 C 0.51 13.79 7.67 87.66 0.67 14.46 16 21 O -0.58 -21.71 15.31 -3.03 -0.05 -21.75 16 22 C -0.12 -2.52 4.23 29.85 0.13 -2.40 16 23 C -0.06 -1.49 4.63 29.84 0.14 -1.35 16 24 C -0.09 -1.95 5.13 -19.87 -0.10 -2.05 16 25 C -0.14 -3.21 9.70 22.27 0.22 -2.99 16 26 C -0.13 -2.55 10.05 22.27 0.22 -2.32 16 27 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 28 C -0.12 -1.83 10.05 22.27 0.22 -1.60 16 29 C -0.12 -2.12 9.70 22.27 0.22 -1.90 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.71 7.67 -2.39 -0.02 0.69 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 0.88 6.88 -2.39 -0.02 0.86 16 35 H 0.34 11.65 7.56 -89.69 -0.68 10.97 16 36 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.39 15.33 5.76 -92.71 -0.53 14.80 16 39 H 0.28 15.55 8.31 -92.70 -0.77 14.78 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.08 0.93 6.45 -2.39 -0.02 0.91 16 42 H 0.08 0.85 6.53 -2.38 -0.02 0.84 16 43 H 0.10 2.00 7.41 -2.39 -0.02 1.98 16 44 H 0.12 1.72 8.10 -2.39 -0.02 1.71 16 45 H 0.08 1.83 8.04 -2.39 -0.02 1.81 16 46 H 0.05 1.55 8.04 -2.39 -0.02 1.53 16 47 H 0.11 2.80 8.06 -2.91 -0.02 2.78 16 48 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 49 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 50 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 51 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -88.33 418.00 2.42 -85.91 By element: Atomic # 1 Polarization: 49.23 SS G_CDS: -0.33 Total: 48.90 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 6.88 Total: 7.80 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -5.94 Total: -125.66 kcal Atomic # 8 Polarization: -57.65 SS G_CDS: -0.09 Total: -57.74 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 1.90 Total: 40.79 kcal Total: -88.33 2.42 -85.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753723765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.049 kcal (2) G-P(sol) polarization free energy of solvation -88.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds