Wall clock time and date at job start Wed Apr 1 2020 04:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47615 * 2 1 4 4 N 1.46509 * 109.46703 * 119.99541 * 2 1 3 5 5 C 1.36935 * 119.99791 * 274.99269 * 4 2 1 6 6 H 1.07999 * 120.00399 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99814 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99843 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99961 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47248 * 90.00300 * 9 7 5 11 11 H 1.48506 * 109.47110 * 209.99939 * 9 7 5 12 12 H 1.48501 * 109.47116 * 329.99801 * 9 7 5 13 13 C 1.52997 * 109.47261 * 239.99175 * 2 1 3 14 14 H 1.08999 * 109.52601 * 299.92435 * 13 2 1 15 15 C 1.53039 * 109.49717 * 60.00270 * 13 2 1 16 16 C 1.53044 * 109.52868 * 181.32373 * 15 13 2 17 17 C 1.53191 * 109.31183 * 298.61402 * 16 15 13 18 18 N 1.46922 * 108.76388 * 54.65594 * 17 16 15 19 19 C 1.34777 * 120.63358 * 126.40433 * 18 17 16 20 20 O 1.21576 * 120.00375 * 174.95985 * 19 18 17 21 21 C 1.47516 * 119.99655 * 354.95950 * 19 18 17 22 22 O 1.35188 * 127.15614 * 6.18377 * 21 19 18 23 23 N 1.21472 * 111.55501 * 179.77369 * 22 21 19 24 24 C 1.29069 * 111.68700 * 0.37967 * 23 22 21 25 25 C 1.35244 * 127.15242 * 186.50433 * 21 19 18 26 26 C 1.50108 * 131.34136 * 0.23617 * 25 21 19 27 27 C 1.53574 * 108.02076 * 163.74516 * 26 25 21 28 28 C 1.53013 * 109.80774 * 50.05188 * 27 26 25 29 29 C 1.50649 * 130.34185 * 180.02562 * 24 23 22 30 30 C 1.46931 * 118.74117 * 306.38078 * 18 17 16 31 31 H 1.08991 * 109.47119 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46748 * 300.00919 * 1 2 3 33 33 H 1.09004 * 109.46600 * 60.00272 * 1 2 3 34 34 H 0.96999 * 119.99750 * 95.00362 * 4 2 1 35 35 H 0.97002 * 119.99974 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.45989 * 301.34006 * 15 13 2 37 37 H 1.08999 * 109.46081 * 61.30790 * 15 13 2 38 38 H 1.08996 * 109.49558 * 58.58580 * 16 15 13 39 39 H 1.09004 * 109.49372 * 178.67844 * 16 15 13 40 40 H 1.09002 * 109.59668 * 294.86883 * 17 16 15 41 41 H 1.08997 * 109.58599 * 174.43286 * 17 16 15 42 42 H 1.09004 * 109.75326 * 283.37801 * 26 25 21 43 43 H 1.09001 * 109.75185 * 44.11917 * 26 25 21 44 44 H 1.09002 * 109.41373 * 170.15091 * 27 26 25 45 45 H 1.09000 * 109.41759 * 289.95088 * 27 26 25 46 46 H 1.08999 * 109.37482 * 48.45737 * 28 27 26 47 47 H 1.09000 * 109.37738 * 168.12107 * 28 27 26 48 48 H 1.09000 * 109.73821 * 43.46108 * 29 24 23 49 49 H 1.08997 * 109.77878 * 282.78230 * 29 24 23 50 50 H 1.08999 * 109.58458 * 293.82421 * 30 18 17 51 51 H 1.08998 * 109.70246 * 173.46155 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1491 -0.0073 2.3758 6 1 1.8921 1.0405 2.4243 7 6 2.6113 -0.6617 3.5094 8 7 2.9241 -1.9388 3.4504 9 14 2.7891 0.2701 5.1185 10 1 1.5211 0.1791 5.8860 11 1 3.8933 -0.3233 5.9148 12 1 3.0944 1.6953 4.8341 13 6 2.0400 -0.7214 -1.2491 14 1 1.6783 -1.7496 -1.2492 15 6 1.5303 -0.0006 -2.4992 16 6 2.0127 -0.7406 -3.7489 17 6 3.5443 -0.7374 -3.7800 18 7 4.0439 -1.2974 -2.5169 19 6 4.9187 -2.3226 -2.5187 20 8 5.3950 -2.7172 -1.4720 21 6 5.2984 -2.9660 -3.7907 22 8 4.9527 -2.5760 -5.0381 23 7 5.4260 -3.3099 -5.8824 24 6 6.1197 -4.2609 -5.3531 25 6 6.0599 -4.0721 -3.9512 26 6 6.7311 -4.9675 -2.9507 27 6 7.1080 -6.2757 -3.6615 28 6 7.8536 -5.9636 -4.9607 29 6 6.8804 -5.3893 -5.9993 30 6 3.5720 -0.7183 -1.2517 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 2.2490 -1.6317 1.1528 35 1 3.2474 -2.3960 4.2425 36 1 0.4406 0.0202 -2.4874 37 1 1.9128 1.0200 -2.5112 38 1 1.6512 -1.7686 -3.7252 39 1 1.6299 -0.2403 -4.6384 40 1 3.9055 0.2846 -3.8948 41 1 3.8941 -1.3466 -4.6135 42 1 7.6300 -4.4839 -2.5683 43 1 6.0475 -5.1789 -2.1285 44 1 7.7484 -6.8704 -3.0102 45 1 6.2026 -6.8380 -3.8895 46 1 8.6405 -5.2365 -4.7604 47 1 8.2997 -6.8787 -5.3504 48 1 7.4376 -5.0136 -6.8576 49 1 6.1860 -6.1649 -6.3222 50 1 3.9355 0.3052 -1.1604 51 1 3.9400 -1.3128 -0.4156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753796267.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:56 Heat of formation + Delta-G solvation = 30.809961 kcal Electronic energy + Delta-G solvation = -31757.643427 eV Core-core repulsion = 27660.132667 eV Total energy + Delta-G solvation = -4097.510760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.14021 -40.09265 -38.19670 -37.68520 -35.49923 -33.33372 -32.80809 -32.56414 -31.78494 -30.40864 -29.59560 -28.19875 -25.99981 -25.00588 -24.26763 -23.49028 -23.08932 -22.45472 -20.90930 -20.23124 -19.64740 -19.36481 -17.91761 -17.48463 -16.97931 -16.35732 -16.04453 -15.33201 -15.11267 -14.89090 -14.63813 -14.34281 -14.18250 -14.16310 -13.75410 -13.65010 -13.43323 -13.13357 -13.01170 -12.78743 -12.69813 -12.61117 -12.32987 -11.99651 -11.95746 -11.33150 -11.29500 -11.23618 -11.07423 -10.96482 -10.85448 -10.77541 -10.69509 -10.55273 -10.27109 -10.19448 -10.12727 -10.09252 -9.75899 -9.59500 -9.53434 -8.88003 -8.53661 -6.91005 -5.70390 -2.99631 0.74377 1.89157 2.46203 2.98605 3.12699 3.46822 3.51832 3.53826 3.63696 4.12914 4.46716 4.49963 4.58006 4.62499 4.73222 4.83041 4.92419 4.96713 5.03641 5.10524 5.16013 5.21794 5.24399 5.37917 5.44568 5.50761 5.61299 5.64248 5.68597 5.71202 5.73061 5.81607 5.81993 5.86227 5.94599 5.97463 6.01840 6.04725 6.14391 6.20711 6.22919 6.41216 6.46047 6.49172 6.68218 6.71992 6.92350 7.11213 7.33121 7.74883 7.86533 8.09570 8.47194 9.58468 10.15819 10.50304 11.51818 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013006 B = 0.002916 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.353062 B = 9599.911410 C =11346.552721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.103 4.103 14 H 0.071 0.929 15 C -0.116 4.116 16 C -0.132 4.132 17 C 0.092 3.908 18 N -0.596 5.596 19 C 0.597 3.403 20 O -0.499 6.499 21 C -0.072 4.072 22 O 0.094 5.906 23 N -0.342 5.342 24 C 0.020 3.980 25 C -0.122 4.122 26 C -0.051 4.051 27 C -0.122 4.122 28 C -0.119 4.119 29 C -0.040 4.040 30 C 0.123 3.877 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.070 0.930 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.635 -4.717 -22.194 23.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.124 4.124 14 H 0.089 0.911 15 C -0.154 4.154 16 C -0.170 4.170 17 C -0.031 4.031 18 N -0.329 5.329 19 C 0.381 3.619 20 O -0.374 6.374 21 C -0.136 4.136 22 O 0.030 5.970 23 N -0.049 5.049 24 C -0.141 4.141 25 C -0.127 4.127 26 C -0.088 4.088 27 C -0.159 4.159 28 C -0.157 4.157 29 C -0.078 4.078 30 C 0.003 3.997 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.116 0.884 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.105 0.895 49 H 0.107 0.893 50 H 0.088 0.912 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.616 -4.444 -22.682 23.786 hybrid contribution 0.206 -0.032 1.454 1.468 sum 5.822 -4.477 -21.229 22.463 Atomic orbital electron populations 1.22480 0.99250 1.00822 0.99919 1.20173 0.91872 0.95283 0.85677 0.93410 1.42456 1.78101 1.10741 1.05293 1.19186 1.36662 0.93779 0.87321 0.91288 1.24728 1.02209 0.95936 0.97955 1.69664 1.50688 1.08608 1.28765 0.86244 0.77215 0.78816 0.84218 1.21878 1.21844 1.20833 1.21782 0.94358 1.00678 0.95541 0.91086 1.21652 1.01185 0.99114 0.93427 1.21907 0.94520 1.01649 0.98939 1.22237 0.95172 0.99855 0.85813 1.48106 1.43157 1.32707 1.08882 1.16681 0.80135 0.80085 0.84960 1.90926 1.53579 1.63152 1.29726 1.23597 1.03695 0.99214 0.87045 1.85314 1.56358 1.43530 1.11825 1.73381 1.11541 1.04251 1.15762 1.23370 1.00636 0.98304 0.91824 1.21124 0.99622 0.96422 0.95496 1.20134 1.00523 0.92859 0.95267 1.21682 1.00887 0.96906 0.96444 1.21632 0.97753 1.01417 0.94915 1.20132 0.96899 0.92756 0.97994 1.21829 0.94105 0.99309 0.84483 0.93611 0.92861 0.94240 0.78210 0.93550 0.91045 0.91712 0.91580 0.90701 0.90734 0.88352 0.89252 0.88753 0.90495 0.91426 0.91224 0.90470 0.89534 0.89325 0.91152 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.14 37.16 0.34 -2.53 16 2 C 0.18 3.41 2.47 -67.93 -0.17 3.25 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 N -0.72 -17.72 4.52 -53.42 -0.24 -17.96 16 5 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 9 Si 0.90 22.54 29.55 -169.99 -5.02 17.52 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 C -0.10 -1.64 1.97 -90.50 -0.18 -1.82 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.12 -1.40 4.85 -26.69 -0.13 -1.53 16 16 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 17 C 0.09 1.05 6.34 -3.71 -0.02 1.02 16 18 N -0.60 -8.78 2.97 -174.01 -0.52 -9.30 16 19 C 0.60 9.67 7.69 -12.48 -0.10 9.57 16 20 O -0.50 -9.77 15.48 5.30 0.08 -9.69 16 21 C -0.07 -1.01 6.97 -36.87 -0.26 -1.26 16 22 O 0.09 1.21 7.81 13.83 0.11 1.32 16 23 N -0.34 -4.38 12.03 33.15 0.40 -3.99 16 24 C 0.02 0.23 7.21 -82.51 -0.60 -0.37 16 25 C -0.12 -1.54 6.02 -104.70 -0.63 -2.18 16 26 C -0.05 -0.56 5.57 -27.87 -0.16 -0.72 16 27 C -0.12 -0.96 5.87 -26.43 -0.16 -1.12 16 28 C -0.12 -0.79 5.84 -26.47 -0.15 -0.95 16 29 C -0.04 -0.31 6.32 -27.66 -0.17 -0.48 16 30 C 0.12 2.08 5.46 -3.71 -0.02 2.06 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.56 6.40 -51.93 -0.33 0.23 16 34 H 0.38 10.21 7.62 -40.82 -0.31 9.90 16 35 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.07 0.83 6.36 -51.93 -0.33 0.49 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 1.09 3.82 -54.65 -0.21 0.88 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.09 1.19 7.90 -51.93 -0.41 0.78 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 46 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 47 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 51 H 0.11 2.30 6.55 -51.93 -0.34 1.96 16 LS Contribution 394.91 15.07 5.95 5.95 Total: -1.00 -31.99 394.91 -9.56 -41.54 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -8.24 Total: 7.87 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -2.81 Total: -5.70 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.36 Total: -58.81 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.19 Total: -8.37 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.99 -9.56 -41.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753796267.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.355 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds