Wall clock time and date at job start Wed Apr 1 2020 04:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47243 * 2 1 4 4 N 1.46504 * 109.46922 * 240.00112 * 2 1 3 5 5 C 1.36931 * 120.00154 * 84.99912 * 4 2 1 6 6 H 1.08003 * 120.00272 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99971 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00013 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99722 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47642 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47231 * 120.00372 * 9 7 5 12 12 H 1.48503 * 109.46708 * 240.00124 * 9 7 5 13 13 C 1.52999 * 109.47310 * 119.99953 * 2 1 3 14 14 H 1.08996 * 109.49787 * 179.97438 * 13 2 1 15 15 C 1.53039 * 109.49845 * 299.99873 * 13 2 1 16 16 C 1.53033 * 109.54174 * 181.31489 * 15 13 2 17 17 C 1.53192 * 109.31495 * 298.63697 * 16 15 13 18 18 N 1.46932 * 108.77494 * 54.62896 * 17 16 15 19 19 C 1.34774 * 120.62948 * 126.37180 * 18 17 16 20 20 O 1.21585 * 120.00206 * 186.93836 * 19 18 17 21 21 C 1.47514 * 120.00074 * 6.93313 * 19 18 17 22 22 O 1.35183 * 127.15311 * 7.52021 * 21 19 18 23 23 N 1.21478 * 111.55682 * 179.97438 * 22 21 19 24 24 C 1.29070 * 111.68354 * 359.88775 * 23 22 21 25 25 C 1.35254 * 127.15526 * 187.50875 * 21 19 18 26 26 C 1.50102 * 131.33420 * 0.25308 * 25 21 19 27 27 C 1.53579 * 108.01557 * 163.81159 * 26 25 21 28 28 C 1.53012 * 109.80270 * 50.05263 * 27 26 25 29 29 C 1.50650 * 130.33963 * 180.45432 * 24 23 22 30 30 C 1.46927 * 118.73940 * 306.64820 * 18 17 16 31 31 H 1.08994 * 109.46956 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46844 * 300.00268 * 1 2 3 33 33 H 1.09000 * 109.47150 * 59.99799 * 1 2 3 34 34 H 0.96993 * 119.99521 * 264.99793 * 4 2 1 35 35 H 0.97000 * 119.99726 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.45711 * 61.29048 * 15 13 2 37 37 H 1.09004 * 109.44739 * 301.33395 * 15 13 2 38 38 H 1.08998 * 109.50389 * 178.68665 * 16 15 13 39 39 H 1.09005 * 109.52203 * 58.60289 * 16 15 13 40 40 H 1.08999 * 109.58773 * 294.84878 * 17 16 15 41 41 H 1.08999 * 109.58961 * 174.41591 * 17 16 15 42 42 H 1.09002 * 109.75393 * 283.43514 * 26 25 21 43 43 H 1.09000 * 109.75873 * 44.18490 * 26 25 21 44 44 H 1.08999 * 109.41966 * 170.15204 * 27 26 25 45 45 H 1.09000 * 109.41505 * 289.95136 * 27 26 25 46 46 H 1.08997 * 109.38122 * 168.11382 * 28 27 26 47 47 H 1.09005 * 109.38236 * 48.44526 * 28 27 26 48 48 H 1.08998 * 109.74240 * 282.73970 * 29 24 23 49 49 H 1.09001 * 109.73469 * 43.44647 * 29 24 23 50 50 H 1.09001 * 109.58287 * 173.13892 * 30 18 17 51 51 H 1.08998 * 109.58654 * 293.56620 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8918 1.0403 -2.4244 7 6 2.6123 -0.6618 -3.5090 8 7 2.9253 -1.9388 -3.4499 9 14 2.7913 0.2703 -5.1180 10 1 2.3762 1.6824 -4.9209 11 1 4.2083 0.2274 -5.5599 12 1 1.9309 -0.3582 -6.1524 13 6 2.0401 -0.7212 1.2492 14 1 3.1300 -0.7219 1.2494 15 6 1.5303 -0.0003 2.4992 16 6 2.0668 -0.7015 3.7492 17 6 1.5535 -2.1445 3.7802 18 7 1.9150 -2.8024 2.5171 19 6 2.5906 -3.9685 2.5190 20 8 2.9941 -4.4391 1.4731 21 6 2.8408 -4.6739 3.7902 22 8 2.3442 -4.3623 5.0083 23 7 2.7348 -5.1349 5.8605 24 6 3.5123 -6.0382 5.3651 25 6 3.6145 -5.7670 3.9793 26 6 4.4343 -6.5794 3.0196 27 6 5.4098 -7.4387 3.8374 28 6 4.6495 -8.1797 4.9392 29 6 4.2147 -7.1924 6.0313 30 6 1.5313 -2.1616 1.2518 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.2490 -1.6317 -1.1526 35 1 3.2493 -2.3959 -4.2418 36 1 0.4406 -0.0204 2.5110 37 1 1.8742 1.0341 2.4872 38 1 1.7225 -0.1738 4.6385 39 1 3.1566 -0.7034 3.7263 40 1 0.4696 -2.1444 3.8949 41 1 2.0112 -2.6774 4.6137 42 1 3.7812 -7.2232 2.4305 43 1 4.9926 -5.9162 2.3589 44 1 5.8930 -8.1624 3.1810 45 1 6.1673 -6.7975 4.2881 46 1 5.2963 -8.9403 5.3764 47 1 3.7685 -8.6587 4.5116 48 1 5.0896 -6.8292 6.5705 49 1 3.5339 -7.6874 6.7239 50 1 1.9744 -2.7057 0.4177 51 1 0.4455 -2.1629 1.1561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753796269.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:02 Heat of formation + Delta-G solvation = 30.317719 kcal Electronic energy + Delta-G solvation = -31768.879905 eV Core-core repulsion = 27671.347800 eV Total energy + Delta-G solvation = -4097.532105 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.15634 -40.17326 -38.23094 -37.75087 -35.50190 -33.33959 -32.80498 -32.57621 -31.89881 -30.33016 -29.59722 -27.88528 -26.13565 -25.01177 -24.52923 -23.49863 -23.14052 -22.69648 -21.09451 -20.25736 -19.69452 -18.68784 -17.98469 -17.58323 -17.03117 -16.26198 -16.06618 -15.36061 -15.11316 -14.80189 -14.69662 -14.48041 -14.22589 -14.17503 -13.78476 -13.69390 -13.50123 -13.14623 -13.07546 -12.77179 -12.74833 -12.66888 -12.41517 -12.00912 -11.90003 -11.53645 -11.30741 -11.25516 -11.08194 -10.97666 -10.85602 -10.76609 -10.62087 -10.45969 -10.28427 -10.22205 -10.15753 -10.06971 -9.79142 -9.61310 -9.51664 -8.87868 -8.53075 -6.91494 -5.70430 -2.99956 0.72224 1.87030 2.45592 2.93807 3.12349 3.46304 3.51565 3.54080 3.62729 4.11679 4.45372 4.49229 4.57271 4.62083 4.71337 4.81286 4.91441 4.95465 5.02441 5.09174 5.15106 5.21284 5.22725 5.37120 5.43353 5.49473 5.60766 5.62415 5.63220 5.67347 5.70905 5.78420 5.82486 5.85824 5.87884 5.95756 5.96598 6.02989 6.08706 6.12801 6.25946 6.36112 6.37977 6.54932 6.63305 6.74893 6.90038 7.13308 7.29637 7.75227 7.83346 8.06271 8.47261 9.58330 10.16078 10.50108 11.51735 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013830 B = 0.002815 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.051914 B = 9945.769030 C =11659.764018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.181 3.819 3 H 0.050 0.950 4 N -0.726 5.726 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.104 4.104 14 H 0.074 0.926 15 C -0.115 4.115 16 C -0.133 4.133 17 C 0.097 3.903 18 N -0.596 5.596 19 C 0.597 3.403 20 O -0.498 6.498 21 C -0.072 4.072 22 O 0.096 5.904 23 N -0.341 5.341 24 C 0.019 3.981 25 C -0.122 4.122 26 C -0.051 4.051 27 C -0.122 4.122 28 C -0.119 4.119 29 C -0.040 4.040 30 C 0.116 3.884 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.385 0.615 35 H 0.254 0.746 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.086 0.914 50 H 0.104 0.896 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.501 -8.210 22.407 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.070 3.930 3 H 0.068 0.932 4 N -0.368 5.368 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.124 4.124 14 H 0.093 0.907 15 C -0.153 4.153 16 C -0.171 4.171 17 C -0.026 4.026 18 N -0.328 5.328 19 C 0.382 3.618 20 O -0.373 6.373 21 C -0.136 4.136 22 O 0.030 5.970 23 N -0.047 5.047 24 C -0.142 4.142 25 C -0.126 4.126 26 C -0.088 4.088 27 C -0.159 4.159 28 C -0.157 4.157 29 C -0.078 4.078 30 C -0.004 4.004 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.105 0.895 50 H 0.122 0.878 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.266 -8.069 22.874 24.257 hybrid contribution 0.387 0.033 -1.439 1.491 sum 0.654 -8.037 21.434 22.901 Atomic orbital electron populations 1.22580 0.99485 1.00870 1.00052 1.20172 0.91843 0.95333 0.85652 0.93208 1.42523 1.78140 1.10816 1.05310 1.19256 1.36525 0.93857 0.87335 0.91199 1.24747 1.02244 0.95961 0.98006 1.69682 1.50739 1.08577 1.28713 0.86163 0.77265 0.78761 0.84262 1.20642 1.21958 1.21957 1.21710 1.01130 0.94037 0.95531 0.90730 1.21643 1.01002 0.99293 0.93395 1.21913 1.01432 0.94738 0.99002 1.22115 1.00939 0.93997 0.85563 1.48070 1.54957 1.21030 1.08783 1.16670 0.79132 0.81044 0.84985 1.90932 1.50100 1.66523 1.29755 1.23555 1.02410 0.99710 0.87917 1.85348 1.55997 1.42689 1.12963 1.73390 1.13260 1.03171 1.14914 1.23382 0.99432 0.98941 0.92448 1.21129 0.99863 0.96125 0.95529 1.20134 0.96381 0.97130 0.95139 1.21682 0.97843 0.99005 0.97385 1.21639 1.00968 0.97416 0.95708 1.20139 0.99240 0.90864 0.97533 1.21869 1.00255 0.93598 0.84716 0.93312 0.94167 0.92848 0.78052 0.93572 0.91255 0.91466 0.90651 0.91573 0.90734 0.88825 0.89176 0.88810 0.90484 0.91449 0.90458 0.91192 0.89323 0.89520 0.87757 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 8.79 37.16 0.33 -2.58 16 2 C 0.18 3.45 2.72 -67.93 -0.18 3.26 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 N -0.73 -17.99 5.04 -53.42 -0.27 -18.26 16 5 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 6 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 9 Si 0.90 22.60 29.55 -169.99 -5.02 17.57 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 C -0.10 -1.66 2.32 -90.72 -0.21 -1.87 16 14 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 15 C -0.12 -1.39 4.78 -26.69 -0.13 -1.52 16 16 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 17 C 0.10 1.08 6.15 -3.71 -0.02 1.06 16 18 N -0.60 -8.62 2.98 -174.27 -0.52 -9.14 16 19 C 0.60 9.53 7.68 -12.48 -0.10 9.44 16 20 O -0.50 -9.64 15.49 5.29 0.08 -9.55 16 21 C -0.07 -0.99 6.87 -36.87 -0.25 -1.25 16 22 O 0.10 1.22 8.01 13.84 0.11 1.33 16 23 N -0.34 -4.32 12.03 33.15 0.40 -3.93 16 24 C 0.02 0.21 7.21 -82.51 -0.60 -0.38 16 25 C -0.12 -1.52 6.02 -104.70 -0.63 -2.15 16 26 C -0.05 -0.55 5.56 -27.87 -0.16 -0.71 16 27 C -0.12 -0.94 5.87 -26.42 -0.16 -1.09 16 28 C -0.12 -0.78 5.84 -26.46 -0.15 -0.94 16 29 C -0.04 -0.30 6.32 -27.64 -0.17 -0.48 16 30 C 0.12 1.91 5.21 -3.93 -0.02 1.89 16 31 H 0.05 0.84 6.32 -51.93 -0.33 0.51 16 32 H 0.04 0.56 6.46 -51.93 -0.34 0.22 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.38 10.26 6.17 -40.82 -0.25 10.01 16 35 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.07 0.79 6.50 -51.93 -0.34 0.45 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.02 4.28 -52.43 -0.22 0.79 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.09 1.15 7.93 -51.93 -0.41 0.74 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 48 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.10 2.11 5.58 -51.93 -0.29 1.82 16 51 H 0.08 1.19 6.16 -51.93 -0.32 0.87 16 LS Contribution 389.72 15.07 5.87 5.87 Total: -1.00 -32.48 389.72 -9.44 -41.92 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -7.96 Total: 8.06 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -2.86 Total: -6.11 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 0.34 Total: -59.09 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.19 Total: -8.22 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.48 -9.44 -41.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753796269.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.235 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds