Wall clock time and date at job start Wed Apr 1 2020 04:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47243 * 2 1 4 4 N 1.46504 * 109.46922 * 240.00112 * 2 1 3 5 5 C 1.36931 * 120.00154 * 84.99912 * 4 2 1 6 6 H 1.08003 * 120.00272 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99971 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00013 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99722 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47642 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47231 * 120.00372 * 9 7 5 12 12 H 1.48503 * 109.46708 * 240.00124 * 9 7 5 13 13 C 1.52999 * 109.47310 * 119.99953 * 2 1 3 14 14 H 1.08996 * 109.49787 * 179.97438 * 13 2 1 15 15 C 1.53039 * 109.49845 * 299.99873 * 13 2 1 16 16 C 1.53033 * 109.54174 * 181.31489 * 15 13 2 17 17 C 1.53192 * 109.31495 * 298.63697 * 16 15 13 18 18 N 1.46932 * 108.77494 * 54.62896 * 17 16 15 19 19 C 1.34774 * 120.62948 * 126.37180 * 18 17 16 20 20 O 1.21585 * 120.00206 * 186.93836 * 19 18 17 21 21 C 1.47514 * 120.00074 * 6.93313 * 19 18 17 22 22 O 1.35183 * 127.15311 * 7.52021 * 21 19 18 23 23 N 1.21478 * 111.55682 * 179.97438 * 22 21 19 24 24 C 1.29070 * 111.68354 * 359.88775 * 23 22 21 25 25 C 1.35254 * 127.15526 * 187.50875 * 21 19 18 26 26 C 1.50102 * 131.33420 * 0.25308 * 25 21 19 27 27 C 1.53579 * 108.01557 * 163.81159 * 26 25 21 28 28 C 1.53012 * 109.80270 * 50.05263 * 27 26 25 29 29 C 1.50650 * 130.33963 * 180.45432 * 24 23 22 30 30 C 1.46927 * 118.73940 * 306.64820 * 18 17 16 31 31 H 1.08994 * 109.46956 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46844 * 300.00268 * 1 2 3 33 33 H 1.09000 * 109.47150 * 59.99799 * 1 2 3 34 34 H 0.96993 * 119.99521 * 264.99793 * 4 2 1 35 35 H 0.97000 * 119.99726 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.45711 * 61.29048 * 15 13 2 37 37 H 1.09004 * 109.44739 * 301.33395 * 15 13 2 38 38 H 1.08998 * 109.50389 * 178.68665 * 16 15 13 39 39 H 1.09005 * 109.52203 * 58.60289 * 16 15 13 40 40 H 1.08999 * 109.58773 * 294.84878 * 17 16 15 41 41 H 1.08999 * 109.58961 * 174.41591 * 17 16 15 42 42 H 1.09002 * 109.75393 * 283.43514 * 26 25 21 43 43 H 1.09000 * 109.75873 * 44.18490 * 26 25 21 44 44 H 1.08999 * 109.41966 * 170.15204 * 27 26 25 45 45 H 1.09000 * 109.41505 * 289.95136 * 27 26 25 46 46 H 1.08997 * 109.38122 * 168.11382 * 28 27 26 47 47 H 1.09005 * 109.38236 * 48.44526 * 28 27 26 48 48 H 1.08998 * 109.74240 * 282.73970 * 29 24 23 49 49 H 1.09001 * 109.73469 * 43.44647 * 29 24 23 50 50 H 1.09001 * 109.58287 * 173.13892 * 30 18 17 51 51 H 1.08998 * 109.58654 * 293.56620 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8918 1.0403 -2.4244 7 6 2.6123 -0.6618 -3.5090 8 7 2.9253 -1.9388 -3.4499 9 14 2.7913 0.2703 -5.1180 10 1 2.3762 1.6824 -4.9209 11 1 4.2083 0.2274 -5.5599 12 1 1.9309 -0.3582 -6.1524 13 6 2.0401 -0.7212 1.2492 14 1 3.1300 -0.7219 1.2494 15 6 1.5303 -0.0003 2.4992 16 6 2.0668 -0.7015 3.7492 17 6 1.5535 -2.1445 3.7802 18 7 1.9150 -2.8024 2.5171 19 6 2.5906 -3.9685 2.5190 20 8 2.9941 -4.4391 1.4731 21 6 2.8408 -4.6739 3.7902 22 8 2.3442 -4.3623 5.0083 23 7 2.7348 -5.1349 5.8605 24 6 3.5123 -6.0382 5.3651 25 6 3.6145 -5.7670 3.9793 26 6 4.4343 -6.5794 3.0196 27 6 5.4098 -7.4387 3.8374 28 6 4.6495 -8.1797 4.9392 29 6 4.2147 -7.1924 6.0313 30 6 1.5313 -2.1616 1.2518 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.2490 -1.6317 -1.1526 35 1 3.2493 -2.3959 -4.2418 36 1 0.4406 -0.0204 2.5110 37 1 1.8742 1.0341 2.4872 38 1 1.7225 -0.1738 4.6385 39 1 3.1566 -0.7034 3.7263 40 1 0.4696 -2.1444 3.8949 41 1 2.0112 -2.6774 4.6137 42 1 3.7812 -7.2232 2.4305 43 1 4.9926 -5.9162 2.3589 44 1 5.8930 -8.1624 3.1810 45 1 6.1673 -6.7975 4.2881 46 1 5.2963 -8.9403 5.3764 47 1 3.7685 -8.6587 4.5116 48 1 5.0896 -6.8292 6.5705 49 1 3.5339 -7.6874 6.7239 50 1 1.9744 -2.7057 0.4177 51 1 0.4455 -2.1629 1.1561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753796269.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:01 Heat of formation + Delta-G solvation = 10.696652 kcal Electronic energy + Delta-G solvation = -31769.730739 eV Core-core repulsion = 27671.347800 eV Total energy + Delta-G solvation = -4098.382938 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.11457 -41.41395 -39.39245 -38.69549 -37.00940 -34.81421 -33.97281 -33.42558 -33.27392 -31.58963 -30.85641 -29.41366 -27.22561 -26.28268 -25.80525 -24.79453 -24.23014 -23.78624 -22.32076 -21.08424 -20.74773 -19.99079 -19.27422 -18.96466 -18.43698 -17.46460 -17.18350 -16.71233 -16.27209 -16.13300 -15.83364 -15.49661 -15.47772 -15.31888 -15.10125 -14.91074 -14.48063 -14.40037 -14.25801 -14.04049 -13.90577 -13.63104 -13.42672 -13.36159 -12.95950 -12.88253 -12.85694 -12.66195 -12.29222 -12.06668 -11.98843 -11.91834 -11.86534 -11.79669 -11.75801 -11.56604 -11.45615 -11.26887 -11.16288 -10.96091 -10.92217 -10.65634 -9.74077 -8.98876 -7.90950 -5.19880 -0.36047 0.94642 1.32835 1.46138 1.47262 1.57108 1.74752 2.00751 2.57147 2.80173 3.17594 3.41977 3.56780 3.69988 3.76587 3.86655 3.88480 3.90666 3.92476 4.03469 4.16214 4.23924 4.27031 4.33114 4.37934 4.42568 4.49197 4.61503 4.64122 4.69246 4.79768 4.82933 4.84774 4.89038 4.91415 4.95085 5.09019 5.10006 5.11093 5.12901 5.14537 5.25278 5.25757 5.33948 5.37137 5.40985 5.47022 5.55893 5.70054 6.10272 6.30591 6.70672 6.97519 7.35837 8.14339 8.35245 9.32601 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013830 B = 0.002815 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.051914 B = 9945.769030 C =11659.764018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 H 0.048 0.952 4 N -0.741 5.741 5 C -0.233 4.233 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.297 1.297 12 H -0.296 1.296 13 C -0.092 4.092 14 H 0.046 0.954 15 C -0.108 4.108 16 C -0.126 4.126 17 C 0.092 3.908 18 N -0.592 5.592 19 C 0.592 3.408 20 O -0.547 6.547 21 C -0.088 4.088 22 O 0.096 5.904 23 N -0.351 5.351 24 C 0.027 3.973 25 C -0.125 4.125 26 C -0.055 4.055 27 C -0.117 4.117 28 C -0.115 4.115 29 C -0.041 4.041 30 C 0.125 3.875 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.371 0.629 35 H 0.248 0.752 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.065 0.935 48 H 0.106 0.894 49 H 0.103 0.897 50 H 0.057 0.943 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 -7.561 25.488 26.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.065 3.935 3 H 0.066 0.934 4 N -0.382 5.382 5 C -0.365 4.365 6 H 0.096 0.904 7 C -0.273 4.273 8 N -0.623 5.623 9 Si 0.800 3.200 10 H -0.188 1.188 11 H -0.224 1.224 12 H -0.223 1.223 13 C -0.112 4.112 14 H 0.065 0.935 15 C -0.146 4.146 16 C -0.164 4.164 17 C -0.029 4.029 18 N -0.323 5.323 19 C 0.378 3.622 20 O -0.425 6.425 21 C -0.151 4.151 22 O 0.031 5.969 23 N -0.059 5.059 24 C -0.134 4.134 25 C -0.130 4.130 26 C -0.092 4.092 27 C -0.154 4.154 28 C -0.152 4.152 29 C -0.079 4.079 30 C 0.003 3.997 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.203 0.797 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.131 0.869 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.110 0.890 45 H 0.089 0.911 46 H 0.125 0.875 47 H 0.084 0.916 48 H 0.124 0.876 49 H 0.121 0.879 50 H 0.075 0.925 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.446 -7.343 26.022 27.042 hybrid contribution 0.585 -0.151 -2.299 2.377 sum 0.140 -7.494 23.723 24.879 Atomic orbital electron populations 1.22411 0.97195 1.00985 1.01197 1.20459 0.93294 0.94913 0.84869 0.93379 1.42798 1.78490 1.10406 1.06514 1.19676 1.34328 0.94188 0.88299 0.90415 1.25576 1.03338 0.96852 1.01568 1.69866 1.52889 1.10360 1.29170 0.85101 0.76597 0.78286 0.79974 1.18753 1.22432 1.22304 1.21541 0.99391 0.93937 0.96371 0.93523 1.21629 1.02031 0.99391 0.91546 1.21910 1.00747 0.94139 0.99599 1.22426 1.02485 0.94242 0.83786 1.48152 1.54158 1.20616 1.09408 1.16973 0.78653 0.81294 0.85271 1.90903 1.52164 1.67827 1.31653 1.23200 1.03782 1.00469 0.87683 1.85334 1.56216 1.42959 1.12342 1.73363 1.13939 1.03707 1.14856 1.23967 0.98486 0.99207 0.91776 1.21490 0.99186 0.95632 0.96705 1.20200 0.96740 0.97051 0.95210 1.21693 0.97123 0.98892 0.97713 1.21655 1.01189 0.97494 0.94910 1.20408 0.99827 0.89679 0.97971 1.21598 1.00344 0.93380 0.84384 0.93711 0.89901 0.94728 0.79685 0.94316 0.89358 0.90242 0.86906 0.92756 0.88382 0.88266 0.89691 0.91112 0.89036 0.91093 0.87474 0.91587 0.87557 0.87917 0.92469 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.20 8.79 71.98 0.63 -4.57 16 2 C 0.17 6.62 2.72 44.99 0.12 6.74 16 3 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 4 N -0.74 -38.14 5.04 -322.93 -1.63 -39.76 16 5 C -0.23 -13.16 9.93 84.03 0.83 -12.33 16 6 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 7 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 8 N -0.97 -62.34 13.06 21.65 0.28 -62.05 16 9 Si 0.97 47.56 29.55 68.60 2.03 49.59 16 10 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 12 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 13 C -0.09 -2.96 2.32 -10.86 -0.03 -2.99 16 14 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 15 C -0.11 -2.32 4.78 30.62 0.15 -2.17 16 16 C -0.13 -2.28 6.08 30.67 0.19 -2.09 16 17 C 0.09 1.88 6.15 86.36 0.53 2.41 16 18 N -0.59 -17.50 2.98 -823.52 -2.45 -19.95 16 19 C 0.59 20.06 7.68 86.69 0.67 20.73 16 20 O -0.55 -23.19 15.49 -3.98 -0.06 -23.25 16 21 C -0.09 -2.48 6.87 24.03 0.17 -2.32 16 22 O 0.10 2.38 8.01 59.53 0.48 2.86 16 23 N -0.35 -8.43 12.03 -50.85 -0.61 -9.04 16 24 C 0.03 0.57 7.21 43.77 0.32 0.89 16 25 C -0.13 -3.17 6.02 -19.92 -0.12 -3.29 16 26 C -0.05 -1.24 5.56 29.86 0.17 -1.08 16 27 C -0.12 -1.65 5.87 30.79 0.18 -1.47 16 28 C -0.11 -1.19 5.84 30.77 0.18 -1.01 16 29 C -0.04 -0.51 6.32 30.00 0.19 -0.32 16 30 C 0.12 4.24 5.21 86.22 0.45 4.69 16 31 H 0.04 1.50 6.32 -2.39 -0.02 1.48 16 32 H 0.08 2.01 6.46 -2.39 -0.02 2.00 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.37 21.07 6.17 -92.71 -0.57 20.50 16 35 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.09 1.61 6.50 -2.39 -0.02 1.59 16 37 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.10 1.99 4.28 -10.37 -0.04 1.95 16 42 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 43 H 0.07 1.92 7.93 -2.39 -0.02 1.90 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 0.97 8.11 -2.39 -0.02 0.95 16 46 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.07 0.77 8.10 -2.38 -0.02 0.75 16 48 H 0.11 1.00 8.14 -2.39 -0.02 0.99 16 49 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.06 2.52 5.58 -2.39 -0.01 2.51 16 51 H 0.09 2.75 6.16 -2.39 -0.01 2.73 16 Total: -1.00 -75.54 389.72 3.47 -72.08 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.35 Total: 32.08 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 5.09 Total: -2.55 kcal Atomic # 7 Polarization: -126.40 SS G_CDS: -4.41 Total: -130.81 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: 0.41 Total: -20.39 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -75.54 3.47 -72.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753796269.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.772 kcal (2) G-P(sol) polarization free energy of solvation -75.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds