Wall clock time and date at job start Wed Apr 1 2020 04:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47359 * 2 1 4 4 N 1.46504 * 109.47205 * 239.99755 * 2 1 3 5 5 C 1.36935 * 119.99807 * 85.00425 * 4 2 1 6 6 H 1.08001 * 120.00018 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99992 * 180.02562 * 5 4 2 8 8 N 1.31623 * 119.99618 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00100 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47242 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47468 * 119.99828 * 9 7 5 12 12 H 1.48498 * 109.47268 * 239.99844 * 9 7 5 13 13 C 1.53003 * 109.47016 * 119.99982 * 2 1 3 14 14 H 1.08993 * 109.49640 * 60.06262 * 13 2 1 15 15 C 1.53045 * 109.49562 * 299.99817 * 13 2 1 16 16 C 1.53039 * 109.53694 * 178.68194 * 15 13 2 17 17 C 1.53196 * 109.33748 * 61.35198 * 16 15 13 18 18 N 1.46931 * 108.77131 * 305.41286 * 17 16 15 19 19 C 1.34775 * 120.60689 * 233.57988 * 18 17 16 20 20 O 1.21283 * 120.00376 * 179.97438 * 19 18 17 21 21 C 1.50706 * 119.99836 * 359.97438 * 19 18 17 22 22 C 1.50697 * 109.47109 * 180.02562 * 21 19 18 23 23 C 1.35449 * 126.77896 * 90.00324 * 22 21 19 24 24 C 1.41373 * 103.98821 * 179.97438 * 23 22 21 25 25 C 1.50705 * 126.80333 * 180.02562 * 24 23 22 26 26 C 1.53002 * 117.49596 * 343.62006 * 25 24 23 27 27 C 1.52997 * 59.99965 * 252.50926 * 26 25 24 28 28 N 1.30174 * 106.39560 * 359.97438 * 24 23 22 29 29 O 1.20923 * 111.60422 * 359.72587 * 28 24 23 30 30 C 1.46928 * 118.76737 * 53.55408 * 18 17 16 31 31 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47197 * 300.00521 * 1 2 3 33 33 H 1.09004 * 109.46733 * 60.00298 * 1 2 3 34 34 H 0.96999 * 119.99837 * 264.99730 * 4 2 1 35 35 H 0.97003 * 119.99574 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.45732 * 58.66499 * 15 13 2 37 37 H 1.08998 * 109.45082 * 298.69655 * 15 13 2 38 38 H 1.09002 * 109.49756 * 181.31922 * 16 15 13 39 39 H 1.09000 * 109.49883 * 301.38665 * 16 15 13 40 40 H 1.08996 * 109.58760 * 65.17188 * 17 16 15 41 41 H 1.09001 * 109.58519 * 185.59185 * 17 16 15 42 42 H 1.09005 * 109.47141 * 300.00250 * 21 19 18 43 43 H 1.09005 * 109.46868 * 60.00194 * 21 19 18 44 44 H 1.08007 * 128.00616 * 359.97075 * 23 22 21 45 45 H 1.08996 * 115.55384 * 129.32786 * 25 24 23 46 46 H 1.08999 * 117.50419 * 0.02562 * 26 25 24 47 47 H 1.08998 * 117.49652 * 145.02045 * 26 25 24 48 48 H 1.09002 * 117.50051 * 252.50685 * 27 26 25 49 49 H 1.09002 * 117.49509 * 107.48924 * 27 26 25 50 50 H 1.08997 * 109.58597 * 186.62384 * 30 18 17 51 51 H 1.09001 * 109.69741 * 66.27202 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6114 -0.6621 -3.5092 8 7 2.9244 -1.9392 -3.4501 9 14 2.7893 0.2696 -5.1185 10 1 2.3756 1.6821 -4.9210 11 1 4.2060 0.2266 -5.5615 12 1 1.9282 -0.3590 -6.1522 13 6 2.0400 -0.7213 1.2493 14 1 1.6778 -1.7493 1.2491 15 6 1.5301 -0.0002 2.4992 16 6 2.0125 -0.7398 3.7492 17 6 3.5441 -0.7375 3.7807 18 7 4.0438 -1.2970 2.5172 19 6 4.9183 -2.3225 2.5192 20 8 5.3233 -2.7762 1.4698 21 6 5.3930 -2.9055 3.8253 22 6 6.3578 -4.0304 3.5521 23 6 7.7022 -3.9315 3.4197 24 6 8.1202 -5.2600 3.1767 25 6 9.5327 -5.7352 2.9521 26 6 10.5858 -4.6811 2.6047 27 6 10.0891 -5.6495 1.5294 28 7 7.0436 -5.9916 3.1865 29 8 6.0558 -5.3273 3.3990 30 6 3.5719 -0.7181 1.2519 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.2491 -1.6318 -1.1525 35 1 3.2477 -2.3964 -4.2421 36 1 0.4404 0.0205 2.4874 37 1 1.9127 1.0204 2.5109 38 1 1.6296 -0.2392 4.6386 39 1 1.6506 -1.7677 3.7261 40 1 3.9057 0.2842 3.8957 41 1 3.8934 -1.3469 4.6142 42 1 5.8929 -2.1319 4.4082 43 1 4.5387 -3.2869 4.3847 44 1 8.3133 -3.0434 3.4846 45 1 9.8480 -6.5790 3.5658 46 1 10.2573 -3.6439 2.5391 47 1 11.5943 -4.8312 2.9901 48 1 10.7707 -6.4367 1.2073 49 1 9.4335 -5.2494 0.7559 50 1 3.9400 -1.3148 0.4174 51 1 3.9354 0.3052 1.1579 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753797414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:21 Heat of formation + Delta-G solvation = 58.402957 kcal Electronic energy + Delta-G solvation = -30914.004038 eV Core-core repulsion = 26817.689800 eV Total energy + Delta-G solvation = -4096.314238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.96606 -40.19275 -37.87888 -37.74874 -35.46761 -33.83321 -33.10885 -32.82982 -31.77679 -30.12552 -28.81598 -27.85713 -25.31070 -24.77214 -23.90804 -23.11600 -22.87801 -22.19652 -21.29694 -20.08212 -19.54657 -18.91334 -17.86662 -17.30404 -17.14868 -16.75318 -16.10287 -15.60876 -15.47583 -14.86499 -14.71744 -14.50845 -14.24836 -14.15119 -13.78511 -13.56018 -13.37163 -13.02719 -12.97571 -12.79873 -12.38469 -12.28033 -12.17128 -12.01689 -11.79577 -11.63729 -11.35742 -11.22081 -11.11331 -11.00654 -10.85034 -10.70716 -10.63102 -10.61383 -10.25810 -10.13179 -9.95283 -9.84680 -9.74694 -9.53867 -9.32094 -8.87537 -8.49439 -6.89835 -5.69191 -2.98749 1.36243 2.10030 2.63737 2.84450 3.19133 3.44085 3.47036 3.51829 3.54853 3.93514 4.26024 4.41406 4.57288 4.61135 4.66295 4.71682 4.78117 4.85904 4.89578 4.97234 4.99233 5.07256 5.22276 5.30686 5.34169 5.35693 5.42512 5.52785 5.60501 5.62040 5.68066 5.76861 5.78792 5.80751 5.88145 5.90976 5.92973 6.00628 6.10603 6.19404 6.22130 6.43546 6.48235 6.50661 6.71075 6.73863 6.92952 7.11674 7.46472 7.75670 8.22179 8.23273 8.48073 9.59284 10.17176 10.51313 11.52911 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009048 B = 0.002930 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.789397 B = 9555.306398 C =11991.595374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.180 3.820 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.928 5.928 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.293 1.293 13 C -0.103 4.103 14 H 0.070 0.930 15 C -0.115 4.115 16 C -0.135 4.135 17 C 0.104 3.896 18 N -0.609 5.609 19 C 0.510 3.490 20 O -0.517 6.517 21 C -0.061 4.061 22 C -0.006 4.006 23 C -0.214 4.214 24 C 0.047 3.953 25 C -0.087 4.087 26 C -0.163 4.163 27 C -0.163 4.163 28 N -0.358 5.358 29 O 0.108 5.892 30 C 0.123 3.877 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.169 0.831 45 H 0.121 0.879 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.103 0.897 49 H 0.100 0.900 50 H 0.107 0.893 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.884 0.025 23.126 24.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.064 0.936 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.576 5.576 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.123 4.123 14 H 0.088 0.912 15 C -0.153 4.153 16 C -0.173 4.173 17 C -0.019 4.019 18 N -0.343 5.343 19 C 0.296 3.704 20 O -0.392 6.392 21 C -0.102 4.102 22 C -0.070 4.070 23 C -0.236 4.236 24 C -0.111 4.111 25 C -0.106 4.106 26 C -0.200 4.200 27 C -0.201 4.201 28 N -0.060 5.060 29 O 0.040 5.960 30 C 0.002 3.998 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.186 0.814 45 H 0.139 0.861 46 H 0.118 0.882 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.125 0.875 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.890 -1.420 22.229 23.631 hybrid contribution 0.345 0.955 -0.868 1.335 sum 8.235 -0.465 21.361 22.898 Atomic orbital electron populations 1.22483 0.99329 1.00806 0.99863 1.20172 0.91829 0.95224 0.85818 0.93558 1.42464 1.78060 1.10766 1.05297 1.19223 1.36655 0.93769 0.87327 0.91264 1.24743 1.02229 0.95923 0.97980 1.69684 1.50631 1.08593 1.28686 0.86178 0.77282 0.78744 0.84336 1.20637 1.21952 1.21976 1.21765 0.94654 1.00548 0.95354 0.91160 1.21630 1.01131 0.99040 0.93521 1.21929 0.94755 1.01724 0.98896 1.21789 0.95036 0.99356 0.85725 1.48163 1.44196 1.33878 1.08087 1.20177 0.79649 0.80080 0.90476 1.90840 1.55902 1.59409 1.33068 1.20184 0.98619 0.93524 0.97847 1.23541 0.94822 0.86283 1.02398 1.22224 0.93972 0.98472 1.08916 1.22557 0.94888 0.90716 1.02929 1.20079 0.87316 1.02264 1.00930 1.23018 0.98020 0.96215 1.02793 1.23050 1.03078 1.02415 0.91534 1.73792 0.94051 1.19815 1.18311 1.84826 1.29832 1.16140 1.65207 1.21716 0.93898 0.98949 0.85255 0.93613 0.94294 0.92901 0.78183 0.93585 0.91159 0.91854 0.90906 0.91462 0.91141 0.90170 0.85750 0.86442 0.81364 0.86070 0.88198 0.87881 0.87903 0.88143 0.87482 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.14 37.16 0.34 -2.54 16 2 C 0.18 3.42 2.47 -67.93 -0.17 3.25 16 3 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 4 N -0.72 -17.99 4.52 -53.42 -0.24 -18.23 16 5 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.86 13.06 55.49 0.72 -28.13 16 9 Si 0.90 22.80 29.55 -169.99 -5.02 17.77 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 C -0.10 -1.60 1.97 -90.50 -0.18 -1.78 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.12 -1.30 4.85 -26.69 -0.13 -1.43 16 16 C -0.13 -1.15 6.08 -26.61 -0.16 -1.31 16 17 C 0.10 0.85 6.34 -3.71 -0.02 0.83 16 18 N -0.61 -7.86 2.97 -172.76 -0.51 -8.38 16 19 C 0.51 7.31 7.69 -10.98 -0.08 7.23 16 20 O -0.52 -10.46 15.45 5.56 0.09 -10.38 16 21 C -0.06 -0.57 4.61 -29.03 -0.13 -0.70 16 22 C -0.01 -0.08 5.98 -35.31 -0.21 -0.29 16 23 C -0.21 -2.56 10.40 -39.39 -0.41 -2.97 16 24 C 0.05 0.63 6.95 -82.10 -0.57 0.06 16 25 C -0.09 -0.90 6.33 -91.77 -0.58 -1.48 16 26 C -0.16 -1.34 10.04 -26.73 -0.27 -1.61 16 27 C -0.16 -1.60 10.23 -26.73 -0.27 -1.87 16 28 N -0.36 -5.53 12.07 33.42 0.40 -5.12 16 29 O 0.11 1.60 11.20 17.18 0.19 1.80 16 30 C 0.12 2.03 5.47 -3.71 -0.02 2.01 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.38 10.46 7.62 -40.82 -0.31 10.15 16 35 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.42 5.93 -51.93 -0.31 0.11 16 42 H 0.12 0.70 7.94 -51.93 -0.41 0.29 16 43 H 0.12 0.79 7.69 -51.93 -0.40 0.39 16 44 H 0.17 1.56 7.63 -52.48 -0.40 1.16 16 45 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.10 0.82 7.35 -51.93 -0.38 0.44 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.11 2.31 6.52 -51.93 -0.34 1.97 16 51 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 409.52 15.07 6.17 6.17 Total: -1.00 -35.80 409.52 -9.57 -45.37 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -8.25 Total: 8.94 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -3.12 Total: -9.82 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.37 Total: -59.86 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.28 Total: -8.58 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.80 -9.57 -45.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753797414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.776 kcal (2) G-P(sol) polarization free energy of solvation -35.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds