Wall clock time and date at job start Wed Apr 1 2020 04:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47359 * 2 1 4 4 N 1.46504 * 109.47205 * 239.99755 * 2 1 3 5 5 C 1.36935 * 119.99807 * 85.00425 * 4 2 1 6 6 H 1.08001 * 120.00018 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99992 * 180.02562 * 5 4 2 8 8 N 1.31623 * 119.99618 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00100 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47242 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47468 * 119.99828 * 9 7 5 12 12 H 1.48498 * 109.47268 * 239.99844 * 9 7 5 13 13 C 1.53003 * 109.47016 * 119.99982 * 2 1 3 14 14 H 1.08993 * 109.49640 * 60.06262 * 13 2 1 15 15 C 1.53045 * 109.49562 * 299.99817 * 13 2 1 16 16 C 1.53039 * 109.53694 * 178.68194 * 15 13 2 17 17 C 1.53196 * 109.33748 * 61.35198 * 16 15 13 18 18 N 1.46931 * 108.77131 * 305.41286 * 17 16 15 19 19 C 1.34775 * 120.60689 * 233.57988 * 18 17 16 20 20 O 1.21283 * 120.00376 * 179.97438 * 19 18 17 21 21 C 1.50706 * 119.99836 * 359.97438 * 19 18 17 22 22 C 1.50697 * 109.47109 * 180.02562 * 21 19 18 23 23 C 1.35449 * 126.77896 * 90.00324 * 22 21 19 24 24 C 1.41373 * 103.98821 * 179.97438 * 23 22 21 25 25 C 1.50705 * 126.80333 * 180.02562 * 24 23 22 26 26 C 1.53002 * 117.49596 * 343.62006 * 25 24 23 27 27 C 1.52997 * 59.99965 * 252.50926 * 26 25 24 28 28 N 1.30174 * 106.39560 * 359.97438 * 24 23 22 29 29 O 1.20923 * 111.60422 * 359.72587 * 28 24 23 30 30 C 1.46928 * 118.76737 * 53.55408 * 18 17 16 31 31 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47197 * 300.00521 * 1 2 3 33 33 H 1.09004 * 109.46733 * 60.00298 * 1 2 3 34 34 H 0.96999 * 119.99837 * 264.99730 * 4 2 1 35 35 H 0.97003 * 119.99574 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.45732 * 58.66499 * 15 13 2 37 37 H 1.08998 * 109.45082 * 298.69655 * 15 13 2 38 38 H 1.09002 * 109.49756 * 181.31922 * 16 15 13 39 39 H 1.09000 * 109.49883 * 301.38665 * 16 15 13 40 40 H 1.08996 * 109.58760 * 65.17188 * 17 16 15 41 41 H 1.09001 * 109.58519 * 185.59185 * 17 16 15 42 42 H 1.09005 * 109.47141 * 300.00250 * 21 19 18 43 43 H 1.09005 * 109.46868 * 60.00194 * 21 19 18 44 44 H 1.08007 * 128.00616 * 359.97075 * 23 22 21 45 45 H 1.08996 * 115.55384 * 129.32786 * 25 24 23 46 46 H 1.08999 * 117.50419 * 0.02562 * 26 25 24 47 47 H 1.08998 * 117.49652 * 145.02045 * 26 25 24 48 48 H 1.09002 * 117.50051 * 252.50685 * 27 26 25 49 49 H 1.09002 * 117.49509 * 107.48924 * 27 26 25 50 50 H 1.08997 * 109.58597 * 186.62384 * 30 18 17 51 51 H 1.09001 * 109.69741 * 66.27202 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6114 -0.6621 -3.5092 8 7 2.9244 -1.9392 -3.4501 9 14 2.7893 0.2696 -5.1185 10 1 2.3756 1.6821 -4.9210 11 1 4.2060 0.2266 -5.5615 12 1 1.9282 -0.3590 -6.1522 13 6 2.0400 -0.7213 1.2493 14 1 1.6778 -1.7493 1.2491 15 6 1.5301 -0.0002 2.4992 16 6 2.0125 -0.7398 3.7492 17 6 3.5441 -0.7375 3.7807 18 7 4.0438 -1.2970 2.5172 19 6 4.9183 -2.3225 2.5192 20 8 5.3233 -2.7762 1.4698 21 6 5.3930 -2.9055 3.8253 22 6 6.3578 -4.0304 3.5521 23 6 7.7022 -3.9315 3.4197 24 6 8.1202 -5.2600 3.1767 25 6 9.5327 -5.7352 2.9521 26 6 10.5858 -4.6811 2.6047 27 6 10.0891 -5.6495 1.5294 28 7 7.0436 -5.9916 3.1865 29 8 6.0558 -5.3273 3.3990 30 6 3.5719 -0.7181 1.2519 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.2491 -1.6318 -1.1525 35 1 3.2477 -2.3964 -4.2421 36 1 0.4404 0.0205 2.4874 37 1 1.9127 1.0204 2.5109 38 1 1.6296 -0.2392 4.6386 39 1 1.6506 -1.7677 3.7261 40 1 3.9057 0.2842 3.8957 41 1 3.8934 -1.3469 4.6142 42 1 5.8929 -2.1319 4.4082 43 1 4.5387 -3.2869 4.3847 44 1 8.3133 -3.0434 3.4846 45 1 9.8480 -6.5790 3.5658 46 1 10.2573 -3.6439 2.5391 47 1 11.5943 -4.8312 2.9901 48 1 10.7707 -6.4367 1.2073 49 1 9.4335 -5.2494 0.7559 50 1 3.9400 -1.3148 0.4174 51 1 3.9354 0.3052 1.1579 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753797414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:20 Heat of formation + Delta-G solvation = 35.160935 kcal Electronic energy + Delta-G solvation = -30915.011887 eV Core-core repulsion = 26817.689800 eV Total energy + Delta-G solvation = -4097.322087 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.96451 -41.29529 -39.14167 -38.52962 -36.94894 -34.88103 -34.53813 -33.93475 -33.09209 -31.52557 -30.26405 -29.08833 -26.51713 -25.70671 -25.56975 -24.34752 -23.79194 -23.00137 -22.40818 -21.24820 -20.81238 -19.89209 -19.16604 -18.83929 -18.26403 -17.90713 -17.00843 -16.78053 -16.59244 -16.46353 -15.69432 -15.58431 -15.51620 -15.28751 -15.02522 -14.82916 -14.56612 -14.24466 -14.06960 -13.93520 -13.83097 -13.38390 -13.21116 -13.02728 -13.01416 -12.82317 -12.58108 -12.52335 -12.45668 -12.32714 -12.10209 -12.06993 -11.94796 -11.79319 -11.64247 -11.40038 -11.36516 -11.17824 -11.02265 -10.93337 -10.71789 -10.33883 -9.59940 -8.99369 -7.92792 -5.21258 0.38568 1.15368 1.43342 1.44977 1.54705 1.57859 1.92386 2.23193 2.55382 2.66885 3.11240 3.40377 3.40971 3.55732 3.77953 3.81066 3.89332 3.93386 4.00326 4.03708 4.06980 4.19969 4.22127 4.25601 4.33437 4.36159 4.47656 4.56077 4.63673 4.64962 4.70972 4.72925 4.83017 4.89216 4.89727 4.96685 5.00329 5.04540 5.06308 5.06580 5.09959 5.16850 5.23478 5.31632 5.42424 5.51401 5.56706 5.59057 5.66607 6.28192 6.44660 7.16879 7.24001 7.33215 8.12191 8.33199 9.30949 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009048 B = 0.002930 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.789397 B = 9555.306398 C =11991.595374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.171 3.829 3 H 0.048 0.952 4 N -0.738 5.738 5 C -0.228 4.228 6 H 0.079 0.921 7 C -0.083 4.083 8 N -0.973 5.973 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.299 1.299 12 H -0.296 1.296 13 C -0.090 4.090 14 H 0.047 0.953 15 C -0.110 4.110 16 C -0.130 4.130 17 C 0.095 3.905 18 N -0.604 5.604 19 C 0.502 3.498 20 O -0.593 6.593 21 C -0.047 4.047 22 C -0.015 4.015 23 C -0.219 4.219 24 C 0.039 3.961 25 C -0.103 4.103 26 C -0.138 4.138 27 C -0.176 4.176 28 N -0.396 5.396 29 O 0.082 5.918 30 C 0.131 3.869 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.032 0.968 34 H 0.366 0.634 35 H 0.246 0.754 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.175 0.825 43 H 0.152 0.848 44 H 0.195 0.805 45 H 0.134 0.866 46 H 0.100 0.900 47 H 0.133 0.867 48 H 0.121 0.879 49 H 0.071 0.929 50 H 0.044 0.956 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.923 2.728 27.019 28.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.062 3.938 3 H 0.066 0.934 4 N -0.378 5.378 5 C -0.361 4.361 6 H 0.097 0.903 7 C -0.275 4.275 8 N -0.625 5.625 9 Si 0.799 3.201 10 H -0.184 1.184 11 H -0.226 1.226 12 H -0.223 1.223 13 C -0.110 4.110 14 H 0.065 0.935 15 C -0.148 4.148 16 C -0.168 4.168 17 C -0.026 4.026 18 N -0.336 5.336 19 C 0.290 3.710 20 O -0.474 6.474 21 C -0.087 4.087 22 C -0.079 4.079 23 C -0.240 4.240 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.175 4.175 27 C -0.214 4.214 28 N -0.102 5.102 29 O 0.018 5.982 30 C 0.008 3.992 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.197 0.803 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.131 0.869 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.141 0.859 42 H 0.193 0.807 43 H 0.170 0.830 44 H 0.212 0.788 45 H 0.152 0.848 46 H 0.118 0.882 47 H 0.151 0.849 48 H 0.140 0.860 49 H 0.089 0.911 50 H 0.062 0.938 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.856 1.372 26.216 27.402 hybrid contribution 0.301 0.184 -2.022 2.053 sum 8.156 1.556 24.194 25.579 Atomic orbital electron populations 1.22323 0.97519 1.00460 1.01030 1.20510 0.92943 0.95050 0.85251 0.93390 1.42721 1.78329 1.10114 1.06605 1.19654 1.34080 0.94101 0.88216 0.90334 1.25584 1.03465 0.96805 1.01650 1.69877 1.53048 1.10508 1.29061 0.85112 0.76517 0.78429 0.80007 1.18432 1.22634 1.22335 1.21600 0.93787 0.99440 0.96163 0.93472 1.21630 1.01602 0.99394 0.92189 1.21946 0.94828 1.01368 0.98682 1.22285 0.94948 1.01221 0.84138 1.48246 1.43473 1.33303 1.08545 1.21124 0.78859 0.79558 0.91412 1.90822 1.58631 1.61733 1.36188 1.20397 0.99711 0.93409 0.95192 1.24204 0.95918 0.86105 1.01667 1.22643 0.94269 0.98792 1.08331 1.23175 0.95663 0.91406 1.01710 1.20277 0.86554 1.03968 1.01337 1.23151 0.98602 0.95477 1.00293 1.23069 1.03410 1.04045 0.90920 1.73770 0.94882 1.21215 1.20362 1.84760 1.30073 1.17420 1.65926 1.21291 0.94552 0.97733 0.85670 0.94708 0.89916 0.94843 0.80260 0.94492 0.90303 0.90524 0.86941 0.92176 0.89007 0.85907 0.80730 0.82988 0.78782 0.84815 0.88190 0.84928 0.86038 0.91069 0.93759 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.23 9.14 71.98 0.66 -4.57 16 2 C 0.17 6.54 2.47 44.99 0.11 6.65 16 3 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 4 N -0.74 -38.39 4.52 -322.93 -1.46 -39.85 16 5 C -0.23 -13.02 9.93 84.03 0.83 -12.18 16 6 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 7 C -0.08 -5.03 5.50 84.86 0.47 -4.56 16 8 N -0.97 -63.96 13.06 21.65 0.28 -63.67 16 9 Si 0.97 48.34 29.55 68.60 2.03 50.36 16 10 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.30 -15.06 7.11 99.48 0.71 -14.36 16 12 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 13 C -0.09 -2.78 1.97 -10.71 -0.02 -2.80 16 14 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 15 C -0.11 -2.10 4.85 30.62 0.15 -1.95 16 16 C -0.13 -1.59 6.08 30.67 0.19 -1.41 16 17 C 0.09 1.09 6.34 86.36 0.55 1.64 16 18 N -0.60 -14.77 2.97 -818.88 -2.43 -17.21 16 19 C 0.50 14.22 7.69 87.66 0.67 14.90 16 20 O -0.59 -25.70 15.45 -3.04 -0.05 -25.74 16 21 C -0.05 -0.74 4.61 29.10 0.13 -0.61 16 22 C -0.01 -0.37 5.98 25.04 0.15 -0.22 16 23 C -0.22 -5.10 10.40 22.40 0.23 -4.87 16 24 C 0.04 1.04 6.95 43.58 0.30 1.34 16 25 C -0.10 -2.10 6.33 -11.54 -0.07 -2.17 16 26 C -0.14 -2.05 10.04 30.59 0.31 -1.74 16 27 C -0.18 -3.51 10.23 30.59 0.31 -3.20 16 28 N -0.40 -12.85 12.07 -49.56 -0.60 -13.45 16 29 O 0.08 2.55 11.20 71.63 0.80 3.35 16 30 C 0.13 4.45 5.47 86.36 0.47 4.92 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 2.08 6.40 -2.39 -0.02 2.07 16 33 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.37 21.46 7.62 -92.71 -0.71 20.75 16 35 H 0.25 15.80 8.31 -92.71 -0.77 15.03 16 36 H 0.08 1.40 6.36 -2.39 -0.02 1.38 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.12 0.44 5.93 -2.39 -0.01 0.42 16 42 H 0.18 0.98 7.94 -2.38 -0.02 0.96 16 43 H 0.15 1.37 7.69 -2.38 -0.02 1.35 16 44 H 0.20 3.23 7.63 -2.91 -0.02 3.21 16 45 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.10 1.49 7.35 -2.39 -0.02 1.47 16 47 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.04 2.08 6.52 -2.39 -0.02 2.07 16 51 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -89.25 409.52 4.25 -85.00 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.23 Total: 32.04 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 5.45 Total: -10.83 kcal Atomic # 7 Polarization: -129.97 SS G_CDS: -4.21 Total: -134.18 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.76 Total: -22.40 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.36 kcal Total: -89.25 4.25 -85.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753797414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.161 kcal (2) G-P(sol) polarization free energy of solvation -89.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds