Wall clock time and date at job start Wed Apr 1 2020 05:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47271 * 2 1 4 4 C 1.50702 * 109.47098 * 120.00492 * 2 1 3 5 5 C 1.37986 * 120.06962 * 293.28025 * 4 2 1 6 6 C 1.38337 * 120.13764 * 180.25735 * 5 4 2 7 7 C 1.38375 * 120.29902 * 359.73874 * 6 5 4 8 8 C 1.37941 * 120.14445 * 359.97438 * 7 6 5 9 9 C 1.39552 * 120.07474 * 113.00316 * 4 2 1 10 10 C 1.47848 * 120.14670 * 0.02562 * 9 4 2 11 11 O 1.21550 * 119.99504 * 319.50304 * 10 9 4 12 12 N 1.34770 * 120.00281 * 139.50749 * 10 9 4 13 13 C 1.46500 * 119.99939 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.47759 * 34.99421 * 13 12 10 15 15 C 1.53005 * 109.46701 * 274.99189 * 13 12 10 16 16 C 1.52998 * 109.47120 * 154.99798 * 13 12 10 17 17 N 1.46897 * 109.47257 * 304.99578 * 16 13 12 18 18 C 1.46901 * 111.00188 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.47108 * 179.97438 * 18 17 16 20 20 O 1.21300 * 119.99991 * 359.97438 * 19 18 17 21 21 N 1.34769 * 120.00123 * 179.97438 * 19 18 17 22 22 C 1.37105 * 120.00369 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99583 * 359.97438 * 22 21 19 24 24 C 1.38940 * 120.00080 * 179.97438 * 22 21 19 25 25 N 1.31415 * 119.99933 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00337 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47271 * 90.00336 * 26 24 22 28 28 H 1.48501 * 109.47509 * 210.00090 * 26 24 22 29 29 H 1.48498 * 109.47031 * 330.00275 * 26 24 22 30 30 H 1.08997 * 109.47212 * 299.99914 * 1 2 3 31 31 H 1.09003 * 109.47166 * 59.99739 * 1 2 3 32 32 H 1.08992 * 109.47470 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47042 * 240.00438 * 2 1 3 34 34 H 1.09004 * 109.46730 * 60.00246 * 3 2 1 35 35 H 1.09005 * 109.46729 * 179.97438 * 3 2 1 36 36 H 1.08994 * 109.47335 * 300.00434 * 3 2 1 37 37 H 1.07988 * 119.92919 * 359.97438 * 5 4 2 38 38 H 1.08003 * 119.85107 * 179.76746 * 6 5 4 39 39 H 1.07998 * 119.93167 * 179.97438 * 7 6 5 40 40 H 1.07997 * 120.07779 * 179.97438 * 8 7 6 41 41 H 0.97002 * 120.00324 * 359.97438 * 12 10 9 42 42 H 1.09001 * 109.47194 * 179.97438 * 15 13 12 43 43 H 1.08999 * 109.47054 * 300.00123 * 15 13 12 44 44 H 1.09005 * 109.46918 * 60.00358 * 15 13 12 45 45 H 1.09000 * 109.47346 * 64.99863 * 16 13 12 46 46 H 1.08998 * 109.47431 * 184.99520 * 16 13 12 47 47 H 1.00902 * 110.99966 * 56.04664 * 17 16 13 48 48 H 1.08998 * 109.46863 * 299.99635 * 18 17 16 49 49 H 1.08992 * 109.47081 * 59.99651 * 18 17 16 50 50 H 0.97006 * 120.00081 * 359.97438 * 21 19 18 51 51 H 0.96999 * 119.99990 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.8178 -0.1652 2.4797 6 6 2.2830 -0.8136 3.6097 7 6 2.9610 -2.0145 3.4962 8 6 3.1770 -2.5734 2.2537 9 6 2.7104 -1.9242 1.1093 10 6 2.9389 -2.5171 -0.2257 11 8 2.0616 -2.4782 -1.0661 12 7 4.1198 -3.1005 -0.5108 13 6 4.3464 -3.6874 -1.8338 14 1 3.8344 -3.0907 -2.5887 15 6 3.8013 -5.1169 -1.8577 16 6 5.8469 -3.7088 -2.1321 17 7 6.3935 -2.3526 -1.9917 18 6 7.8354 -2.3345 -2.2719 19 6 8.3593 -0.9298 -2.1188 20 8 7.6054 -0.0319 -1.8073 21 7 9.6653 -0.6711 -2.3278 22 6 10.1420 0.6068 -2.1880 23 1 9.4708 1.4062 -1.9108 24 6 11.4885 0.8734 -2.4031 25 7 11.9454 2.0983 -2.2696 26 14 12.6496 -0.5094 -2.8819 27 1 12.6926 -0.6296 -4.3615 28 1 14.0114 -0.2121 -2.3698 29 1 12.1678 -1.7857 -2.2954 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6767 1.9563 0.8901 35 1 3.1301 1.4424 0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.2897 0.7719 2.5751 38 1 2.1158 -0.3808 4.5850 39 1 3.3219 -2.5154 4.3824 40 1 3.7066 -3.5105 2.1664 41 1 4.8201 -3.1312 0.1597 42 1 3.9694 -5.5535 -2.8422 43 1 4.3134 -5.7136 -1.1029 44 1 2.7323 -5.1016 -1.6452 45 1 6.3473 -4.3767 -1.4309 46 1 6.0100 -4.0627 -3.1501 47 1 6.1980 -1.9770 -1.0758 48 1 8.3498 -2.9928 -1.5718 49 1 8.0119 -2.6786 -3.2909 50 1 10.2682 -1.3891 -2.5765 51 1 12.8854 2.2845 -2.4201 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754228879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:25 Heat of formation + Delta-G solvation = -52.781875 kcal Electronic energy + Delta-G solvation = -30560.303153 eV Core-core repulsion = 26459.167579 eV Total energy + Delta-G solvation = -4101.135574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.68482 -38.94756 -38.41297 -36.76444 -35.47616 -34.30518 -33.71104 -32.09911 -31.66258 -30.39249 -29.94185 -27.79406 -27.12376 -25.13046 -24.21490 -23.59480 -23.12958 -21.44527 -20.54142 -20.08635 -19.40926 -18.45867 -17.93119 -16.61490 -16.36140 -16.14385 -15.64524 -15.51714 -15.06199 -14.83185 -14.68637 -14.23454 -14.14776 -14.02222 -13.99042 -13.59884 -13.52357 -13.23170 -13.17574 -12.76411 -12.65929 -12.45456 -12.34706 -12.28420 -12.10912 -11.95812 -11.89192 -11.80157 -11.69669 -11.19621 -11.14383 -11.07323 -10.86345 -10.77194 -10.61419 -9.99085 -9.80081 -9.58857 -9.24061 -9.11539 -8.88550 -8.61594 -8.22679 -8.17817 -6.32407 -3.83984 0.79605 1.15444 2.66318 3.00302 3.02460 3.05368 3.13484 3.59368 3.71785 3.98604 4.08868 4.47238 4.52466 4.60372 4.73882 4.76979 4.80769 5.02235 5.04467 5.14277 5.18973 5.19158 5.21088 5.23601 5.34494 5.36637 5.48720 5.52447 5.59241 5.60473 5.63416 5.75492 5.76053 5.81878 5.86924 5.89060 5.90067 6.01812 6.03260 6.09165 6.14763 6.25387 6.28541 6.37323 6.52977 6.69305 7.00199 7.34898 7.48412 7.56637 8.10316 8.13000 8.58209 8.93606 9.40820 9.80980 10.80741 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.002530 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.882095 B =11064.032463 C =12131.012886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.076 4.076 3 C -0.146 4.146 4 C -0.016 4.016 5 C -0.122 4.122 6 C -0.096 4.096 7 C -0.132 4.132 8 C -0.088 4.088 9 C -0.131 4.131 10 C 0.566 3.434 11 O -0.528 6.528 12 N -0.717 5.717 13 C 0.144 3.856 14 H 0.100 0.900 15 C -0.161 4.161 16 C 0.050 3.950 17 N -0.667 5.667 18 C 0.047 3.953 19 C 0.449 3.551 20 O -0.563 6.563 21 N -0.590 5.590 22 C -0.305 4.305 23 H 0.119 0.881 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.398 0.602 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.032 0.968 46 H 0.088 0.912 47 H 0.349 0.651 48 H 0.044 0.956 49 H 0.089 0.911 50 H 0.370 0.630 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.099 -14.284 8.749 24.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.094 4.094 3 C -0.204 4.204 4 C -0.017 4.017 5 C -0.140 4.140 6 C -0.115 4.115 7 C -0.150 4.150 8 C -0.107 4.107 9 C -0.134 4.134 10 C 0.354 3.646 11 O -0.405 6.405 12 N -0.369 5.369 13 C 0.039 3.961 14 H 0.118 0.882 15 C -0.220 4.220 16 C -0.080 4.080 17 N -0.300 5.300 18 C -0.085 4.085 19 C 0.234 3.766 20 O -0.444 6.444 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.232 0.768 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.050 0.950 46 H 0.106 0.894 47 H 0.170 0.830 48 H 0.062 0.938 49 H 0.107 0.893 50 H 0.203 0.797 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.220 -13.295 7.682 24.601 hybrid contribution 2.013 -1.471 0.850 2.634 sum -17.207 -14.766 8.532 24.226 Atomic orbital electron populations 1.21716 0.94000 1.01937 1.01346 1.20464 0.96362 0.96094 0.96501 1.21898 1.01815 0.94915 1.01726 1.19933 0.93676 0.92601 0.95465 1.20995 1.00972 1.00457 0.91583 1.21316 0.96551 0.94923 0.98673 1.21050 1.00244 0.96433 0.97273 1.21223 0.98025 0.99459 0.91952 1.19810 1.03336 0.97174 0.93117 1.18228 0.82212 0.77127 0.87060 1.90741 1.43338 1.57654 1.48788 1.45990 1.15978 1.58984 1.15900 1.21061 0.95521 0.94403 0.85072 0.88231 1.22153 1.01900 0.95647 1.02312 1.22311 0.93166 0.90338 1.02142 1.59995 1.12774 1.19777 1.37448 1.21726 0.88509 0.96440 1.01864 1.19698 0.82748 0.89757 0.84375 1.90580 1.56183 1.46628 1.51043 1.42203 1.07648 1.09970 1.63166 1.19431 0.94364 0.84931 1.44641 0.86294 1.25039 0.96846 0.96573 0.97708 1.69624 1.15510 1.18581 1.48397 0.86665 0.81477 0.81703 0.79477 1.19584 1.20199 1.19563 0.93121 0.92357 0.92447 0.87901 0.92812 0.92096 0.92129 0.85429 0.85711 0.85600 0.85700 0.76794 0.91330 0.92572 0.91809 0.94966 0.89366 0.83047 0.93769 0.89314 0.79710 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 9.07 37.16 0.34 -1.07 16 2 C -0.08 -0.93 2.64 -91.77 -0.24 -1.18 16 3 C -0.15 -1.70 8.93 37.16 0.33 -1.36 16 4 C -0.02 -0.19 4.81 -104.22 -0.50 -0.69 16 5 C -0.12 -1.22 8.78 -39.64 -0.35 -1.57 16 6 C -0.10 -0.84 10.04 -39.49 -0.40 -1.24 16 7 C -0.13 -1.14 10.03 -39.64 -0.40 -1.53 16 8 C -0.09 -0.84 9.35 -39.18 -0.37 -1.21 16 9 C -0.13 -1.56 5.76 -104.97 -0.60 -2.17 16 10 C 0.57 7.36 6.82 -12.33 -0.08 7.27 16 11 O -0.53 -8.26 14.22 5.32 0.08 -8.19 16 12 N -0.72 -7.79 4.29 -54.75 -0.23 -8.02 16 13 C 0.14 1.54 2.88 -67.93 -0.20 1.34 16 14 H 0.10 1.32 7.58 -51.93 -0.39 0.92 16 15 C -0.16 -1.40 9.48 37.16 0.35 -1.04 16 16 C 0.05 0.53 5.30 -3.83 -0.02 0.51 16 17 N -0.67 -9.94 6.12 -115.06 -0.70 -10.65 16 18 C 0.05 0.76 6.17 -4.97 -0.03 0.72 16 19 C 0.45 10.08 7.82 -10.99 -0.09 10.00 16 20 O -0.56 -15.10 15.78 5.54 0.09 -15.01 16 21 N -0.59 -13.94 5.09 -10.96 -0.06 -13.99 16 22 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 23 H 0.12 3.85 7.39 -52.48 -0.39 3.47 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 25 N -0.88 -25.71 13.96 55.50 0.77 -24.93 16 26 Si 0.88 19.21 27.74 -169.99 -4.71 14.50 16 27 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 28 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 29 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 30 H 0.05 0.46 7.82 -51.93 -0.41 0.05 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 1.53 5.17 -51.93 -0.27 1.26 16 34 H 0.05 0.53 7.05 -51.93 -0.37 0.16 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.13 1.07 7.10 -52.49 -0.37 0.70 16 38 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.13 0.92 7.88 -52.49 -0.41 0.50 16 41 H 0.40 3.67 7.61 -40.82 -0.31 3.36 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.35 5.46 7.28 -39.29 -0.29 5.18 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 50 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 51 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 416.07 15.07 6.27 6.27 Total: -1.00 -34.52 416.07 -9.10 -43.62 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: -8.10 Total: 17.35 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.50 Total: -0.93 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.22 Total: -57.60 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.16 Total: -23.20 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.52 -9.10 -43.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754228879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.161 kcal (2) G-P(sol) polarization free energy of solvation -34.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds