Wall clock time and date at job start Wed Apr 1 2020 05:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47271 * 2 1 4 4 C 1.50702 * 109.47098 * 120.00492 * 2 1 3 5 5 C 1.37986 * 120.06962 * 293.28025 * 4 2 1 6 6 C 1.38337 * 120.13764 * 180.25735 * 5 4 2 7 7 C 1.38375 * 120.29902 * 359.73874 * 6 5 4 8 8 C 1.37941 * 120.14445 * 359.97438 * 7 6 5 9 9 C 1.39552 * 120.07474 * 113.00316 * 4 2 1 10 10 C 1.47848 * 120.14670 * 0.02562 * 9 4 2 11 11 O 1.21550 * 119.99504 * 319.50304 * 10 9 4 12 12 N 1.34770 * 120.00281 * 139.50749 * 10 9 4 13 13 C 1.46500 * 119.99939 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.47759 * 34.99421 * 13 12 10 15 15 C 1.53005 * 109.46701 * 274.99189 * 13 12 10 16 16 C 1.52998 * 109.47120 * 154.99798 * 13 12 10 17 17 N 1.46897 * 109.47257 * 304.99578 * 16 13 12 18 18 C 1.46901 * 111.00188 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.47108 * 179.97438 * 18 17 16 20 20 O 1.21300 * 119.99991 * 359.97438 * 19 18 17 21 21 N 1.34769 * 120.00123 * 179.97438 * 19 18 17 22 22 C 1.37105 * 120.00369 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99583 * 359.97438 * 22 21 19 24 24 C 1.38940 * 120.00080 * 179.97438 * 22 21 19 25 25 N 1.31415 * 119.99933 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00337 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47271 * 90.00336 * 26 24 22 28 28 H 1.48501 * 109.47509 * 210.00090 * 26 24 22 29 29 H 1.48498 * 109.47031 * 330.00275 * 26 24 22 30 30 H 1.08997 * 109.47212 * 299.99914 * 1 2 3 31 31 H 1.09003 * 109.47166 * 59.99739 * 1 2 3 32 32 H 1.08992 * 109.47470 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47042 * 240.00438 * 2 1 3 34 34 H 1.09004 * 109.46730 * 60.00246 * 3 2 1 35 35 H 1.09005 * 109.46729 * 179.97438 * 3 2 1 36 36 H 1.08994 * 109.47335 * 300.00434 * 3 2 1 37 37 H 1.07988 * 119.92919 * 359.97438 * 5 4 2 38 38 H 1.08003 * 119.85107 * 179.76746 * 6 5 4 39 39 H 1.07998 * 119.93167 * 179.97438 * 7 6 5 40 40 H 1.07997 * 120.07779 * 179.97438 * 8 7 6 41 41 H 0.97002 * 120.00324 * 359.97438 * 12 10 9 42 42 H 1.09001 * 109.47194 * 179.97438 * 15 13 12 43 43 H 1.08999 * 109.47054 * 300.00123 * 15 13 12 44 44 H 1.09005 * 109.46918 * 60.00358 * 15 13 12 45 45 H 1.09000 * 109.47346 * 64.99863 * 16 13 12 46 46 H 1.08998 * 109.47431 * 184.99520 * 16 13 12 47 47 H 1.00902 * 110.99966 * 56.04664 * 17 16 13 48 48 H 1.08998 * 109.46863 * 299.99635 * 18 17 16 49 49 H 1.08992 * 109.47081 * 59.99651 * 18 17 16 50 50 H 0.97006 * 120.00081 * 359.97438 * 21 19 18 51 51 H 0.96999 * 119.99990 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.8178 -0.1652 2.4797 6 6 2.2830 -0.8136 3.6097 7 6 2.9610 -2.0145 3.4962 8 6 3.1770 -2.5734 2.2537 9 6 2.7104 -1.9242 1.1093 10 6 2.9389 -2.5171 -0.2257 11 8 2.0616 -2.4782 -1.0661 12 7 4.1198 -3.1005 -0.5108 13 6 4.3464 -3.6874 -1.8338 14 1 3.8344 -3.0907 -2.5887 15 6 3.8013 -5.1169 -1.8577 16 6 5.8469 -3.7088 -2.1321 17 7 6.3935 -2.3526 -1.9917 18 6 7.8354 -2.3345 -2.2719 19 6 8.3593 -0.9298 -2.1188 20 8 7.6054 -0.0319 -1.8073 21 7 9.6653 -0.6711 -2.3278 22 6 10.1420 0.6068 -2.1880 23 1 9.4708 1.4062 -1.9108 24 6 11.4885 0.8734 -2.4031 25 7 11.9454 2.0983 -2.2696 26 14 12.6496 -0.5094 -2.8819 27 1 12.6926 -0.6296 -4.3615 28 1 14.0114 -0.2121 -2.3698 29 1 12.1678 -1.7857 -2.2954 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6767 1.9563 0.8901 35 1 3.1301 1.4424 0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.2897 0.7719 2.5751 38 1 2.1158 -0.3808 4.5850 39 1 3.3219 -2.5154 4.3824 40 1 3.7066 -3.5105 2.1664 41 1 4.8201 -3.1312 0.1597 42 1 3.9694 -5.5535 -2.8422 43 1 4.3134 -5.7136 -1.1029 44 1 2.7323 -5.1016 -1.6452 45 1 6.3473 -4.3767 -1.4309 46 1 6.0100 -4.0627 -3.1501 47 1 6.1980 -1.9770 -1.0758 48 1 8.3498 -2.9928 -1.5718 49 1 8.0119 -2.6786 -3.2909 50 1 10.2682 -1.3891 -2.5765 51 1 12.8854 2.2845 -2.4201 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754228879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:24 Heat of formation + Delta-G solvation = -78.288571 kcal Electronic energy + Delta-G solvation = -30561.409206 eV Core-core repulsion = 26459.167579 eV Total energy + Delta-G solvation = -4102.241627 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.56971 -40.33798 -39.65330 -37.83185 -36.38006 -36.04021 -35.07656 -33.74752 -32.94737 -31.20386 -30.72928 -29.11406 -28.04999 -26.65856 -25.17422 -24.44660 -24.34970 -22.29908 -21.46301 -21.29611 -20.93100 -20.28639 -18.90584 -17.80515 -17.50561 -17.12505 -17.02746 -16.56017 -16.48594 -15.93209 -15.76370 -15.49631 -15.29459 -14.98857 -14.94198 -14.87203 -14.51924 -14.45433 -14.36371 -14.18181 -14.05217 -13.48167 -13.27169 -13.15803 -13.10166 -13.05493 -12.95951 -12.81920 -12.69785 -12.56067 -12.41365 -12.10720 -11.99883 -11.94073 -11.78841 -11.61944 -11.51753 -10.76973 -10.46396 -10.25347 -10.13985 -9.87980 -9.66297 -9.33445 -8.41573 -6.02914 0.00821 0.41314 1.29911 1.36297 1.44975 1.73447 1.95507 2.17057 2.23218 2.70316 2.82016 3.14784 3.35885 3.63390 3.72568 3.81372 3.90527 4.10609 4.12684 4.20810 4.24407 4.26182 4.34387 4.43401 4.43879 4.48292 4.52984 4.56298 4.67843 4.72630 4.74506 4.78505 4.86148 4.89093 4.90789 5.06969 5.08370 5.16772 5.21446 5.27318 5.33515 5.39535 5.50845 5.52343 5.52852 5.65055 5.88713 5.98003 6.02353 6.32270 6.47048 6.59429 6.87855 7.17901 7.39357 7.96684 8.76274 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.002530 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.882095 B =11064.032463 C =12131.012886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 C -0.142 4.142 4 C -0.039 4.039 5 C -0.131 4.131 6 C -0.095 4.095 7 C -0.132 4.132 8 C -0.089 4.089 9 C -0.157 4.157 10 C 0.561 3.439 11 O -0.566 6.566 12 N -0.708 5.708 13 C 0.144 3.856 14 H 0.065 0.935 15 C -0.151 4.151 16 C 0.057 3.943 17 N -0.692 5.692 18 C 0.062 3.938 19 C 0.445 3.555 20 O -0.616 6.616 21 N -0.590 5.590 22 C -0.330 4.330 23 H 0.052 0.948 24 C -0.016 4.016 25 N -0.936 5.936 26 Si 0.967 3.033 27 H -0.258 1.258 28 H -0.276 1.276 29 H -0.228 1.228 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.061 0.939 37 H 0.142 0.858 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.146 0.854 41 H 0.407 0.593 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.104 0.896 47 H 0.341 0.659 48 H 0.084 0.916 49 H 0.117 0.883 50 H 0.391 0.609 51 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.887 -18.216 9.895 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.094 4.094 3 C -0.199 4.199 4 C -0.040 4.040 5 C -0.149 4.149 6 C -0.113 4.113 7 C -0.150 4.150 8 C -0.107 4.107 9 C -0.160 4.160 10 C 0.349 3.651 11 O -0.446 6.446 12 N -0.360 5.360 13 C 0.040 3.960 14 H 0.083 0.917 15 C -0.209 4.209 16 C -0.071 4.071 17 N -0.326 5.326 18 C -0.070 4.070 19 C 0.233 3.767 20 O -0.501 6.501 21 N -0.231 5.231 22 C -0.459 4.459 23 H 0.070 0.930 24 C -0.215 4.215 25 N -0.576 5.576 26 Si 0.787 3.213 27 H -0.183 1.183 28 H -0.201 1.201 29 H -0.151 1.151 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.159 0.841 38 H 0.171 0.829 39 H 0.174 0.826 40 H 0.164 0.836 41 H 0.243 0.757 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.122 0.878 47 H 0.160 0.840 48 H 0.101 0.899 49 H 0.135 0.865 50 H 0.226 0.774 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.003 -17.274 8.831 26.467 hybrid contribution 1.535 -0.140 0.545 1.635 sum -16.468 -17.414 9.376 25.736 Atomic orbital electron populations 1.21652 0.92825 1.01405 1.02392 1.20364 0.97380 0.95906 0.95798 1.21857 1.00108 0.95089 1.02828 1.20046 0.94795 0.93233 0.95958 1.21208 1.01297 1.01144 0.91233 1.21713 0.95382 0.94785 0.99415 1.21460 0.99387 0.96336 0.97815 1.21501 0.97605 1.00048 0.91568 1.19919 1.04916 0.97892 0.93309 1.18538 0.82304 0.76872 0.87356 1.90710 1.44682 1.59159 1.50039 1.45943 1.15538 1.58271 1.16212 1.21055 0.95791 0.95117 0.84067 0.91663 1.22057 1.00686 0.94263 1.03932 1.22374 0.92382 0.88459 1.03922 1.59966 1.12466 1.22834 1.37296 1.21657 0.89126 0.91607 1.04579 1.21077 0.81825 0.92215 0.81537 1.90563 1.57487 1.49357 1.52669 1.42015 1.08620 1.08667 1.63848 1.18994 0.94344 0.85864 1.46677 0.92963 1.26150 0.98501 1.00182 0.96627 1.69813 1.16444 1.21881 1.49484 0.85338 0.77639 0.78641 0.79710 1.18264 1.20067 1.15102 0.91166 0.92114 0.93706 0.91289 0.90660 0.94590 0.92022 0.84074 0.82872 0.82650 0.83600 0.75706 0.89728 0.90551 0.93731 0.91838 0.87805 0.83973 0.89869 0.86487 0.77372 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.07 71.98 0.65 -2.13 16 2 C -0.08 -2.01 2.64 -11.54 -0.03 -2.04 16 3 C -0.14 -3.52 8.93 71.98 0.64 -2.87 16 4 C -0.04 -0.97 4.81 -19.61 -0.09 -1.07 16 5 C -0.13 -2.53 8.78 22.23 0.20 -2.33 16 6 C -0.10 -1.46 10.04 22.33 0.22 -1.23 16 7 C -0.13 -1.96 10.03 22.23 0.22 -1.73 16 8 C -0.09 -1.59 9.35 22.53 0.21 -1.38 16 9 C -0.16 -3.85 5.76 -20.09 -0.12 -3.97 16 10 C 0.56 15.38 6.82 86.79 0.59 15.97 16 11 O -0.57 -19.23 14.22 -3.87 -0.06 -19.29 16 12 N -0.71 -15.38 4.29 -445.42 -1.91 -17.29 16 13 C 0.14 2.98 2.88 44.99 0.13 3.11 16 14 H 0.07 1.81 7.58 -2.39 -0.02 1.80 16 15 C -0.15 -2.35 9.48 71.98 0.68 -1.66 16 16 C 0.06 1.05 5.30 86.30 0.46 1.50 16 17 N -0.69 -19.58 6.12 -517.95 -3.17 -22.75 16 18 C 0.06 1.79 6.17 85.56 0.53 2.32 16 19 C 0.45 19.92 7.82 87.66 0.69 20.61 16 20 O -0.62 -34.57 15.78 -3.09 -0.05 -34.62 16 21 N -0.59 -27.49 5.09 -306.99 -1.56 -29.05 16 22 C -0.33 -19.35 10.16 84.04 0.85 -18.49 16 23 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 24 C -0.02 -0.89 5.50 84.92 0.47 -0.43 16 25 N -0.94 -56.56 13.96 21.66 0.30 -56.25 16 26 Si 0.97 38.26 27.74 68.60 1.90 40.16 16 27 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 28 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 29 H -0.23 -7.41 6.52 99.48 0.65 -6.76 16 30 H 0.07 1.25 7.82 -2.39 -0.02 1.23 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 2.30 5.17 -2.38 -0.01 2.28 16 34 H 0.07 1.50 7.05 -2.38 -0.02 1.48 16 35 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.14 2.20 7.10 -2.92 -0.02 2.18 16 38 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.15 1.84 7.88 -2.91 -0.02 1.82 16 41 H 0.41 7.13 7.61 -92.71 -0.71 6.43 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.34 10.53 7.28 -89.69 -0.65 9.88 16 48 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 50 H 0.39 14.82 5.76 -92.70 -0.53 14.28 16 51 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -84.73 416.07 0.77 -83.96 By element: Atomic # 1 Polarization: 51.95 SS G_CDS: -0.99 Total: 50.96 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 6.30 Total: 4.17 kcal Atomic # 7 Polarization: -119.01 SS G_CDS: -6.34 Total: -125.35 kcal Atomic # 8 Polarization: -53.80 SS G_CDS: -0.10 Total: -53.91 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 1.90 Total: 40.16 kcal Total: -84.73 0.77 -83.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754228879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.673 kcal (2) G-P(sol) polarization free energy of solvation -84.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds