Wall clock time and date at job start Wed Apr 1 2020 04:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35681 * 116.99905 * 2 1 4 4 C 1.38922 * 119.68148 * 179.97438 * 3 2 1 5 5 C 1.38377 * 119.10756 * 179.97438 * 4 3 2 6 6 C 1.38824 * 118.48901 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.36128 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47481 * 89.99230 * 7 6 5 9 9 C 1.50700 * 109.47250 * 180.02562 * 8 7 6 10 10 O 1.21281 * 119.99889 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00124 * 180.02562 * 9 8 7 12 12 C 1.47021 * 125.64567 * 359.96424 * 11 9 8 13 13 C 1.54327 * 107.27200 * 178.99233 * 12 11 9 14 14 C 1.55162 * 102.94067 * 337.81304 * 13 12 11 15 15 H 1.09005 * 111.00287 * 277.39235 * 14 13 12 16 16 C 1.52992 * 111.00737 * 153.57554 * 14 13 12 17 17 H 1.08998 * 109.46862 * 301.45862 * 16 14 13 18 18 C 1.52997 * 109.47482 * 181.45297 * 16 14 13 19 19 N 1.46506 * 109.46999 * 61.44947 * 16 14 13 20 20 C 1.36936 * 119.99838 * 205.00251 * 19 16 14 21 21 H 1.07999 * 120.00085 * 359.97438 * 20 19 16 22 22 C 1.38815 * 119.99824 * 180.02562 * 20 19 16 23 23 N 1.31622 * 119.99803 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99851 * 359.97438 * 22 20 19 25 25 H 1.48494 * 109.47209 * 90.00616 * 24 22 20 26 26 H 1.48506 * 109.47027 * 210.00119 * 24 22 20 27 27 H 1.48501 * 109.47427 * 329.99828 * 24 22 20 28 28 C 1.47420 * 125.65069 * 180.02562 * 11 9 8 29 29 C 1.38052 * 119.28805 * 0.24803 * 6 5 4 30 30 N 1.31963 * 120.83512 * 359.45980 * 29 6 5 31 31 H 1.08996 * 109.47206 * 300.00465 * 1 2 3 32 32 H 1.09007 * 109.46500 * 60.00306 * 1 2 3 33 33 H 1.08998 * 109.47081 * 180.02562 * 1 2 3 34 34 H 1.08001 * 120.44619 * 359.97438 * 4 3 2 35 35 H 1.08003 * 120.75663 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.46517 * 329.99592 * 7 6 5 37 37 H 1.08997 * 109.47706 * 210.00113 * 7 6 5 38 38 H 1.09002 * 109.46949 * 60.00627 * 8 7 6 39 39 H 1.08997 * 109.47371 * 300.01088 * 8 7 6 40 40 H 1.09011 * 109.88138 * 59.57977 * 12 11 9 41 41 H 1.08995 * 110.01937 * 298.48370 * 12 11 9 42 42 H 1.09004 * 110.72059 * 219.45182 * 13 12 11 43 43 H 1.08999 * 110.72063 * 96.17342 * 13 12 11 44 44 H 1.09002 * 109.47153 * 59.99783 * 18 16 14 45 45 H 1.09001 * 109.46832 * 299.99974 * 18 16 14 46 46 H 1.09004 * 109.47261 * 179.97438 * 18 16 14 47 47 H 0.96992 * 120.00062 * 25.00521 * 19 16 14 48 48 H 0.97000 * 119.99658 * 180.02562 * 23 22 20 49 49 H 1.09006 * 110.36434 * 85.24118 * 28 11 9 50 50 H 1.09000 * 110.36708 * 322.91686 * 28 11 9 51 51 H 1.08000 * 119.57883 * 179.72724 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2505 3.6491 -0.0005 7 6 3.8767 5.0199 -0.0006 8 6 4.0894 5.4835 -1.4430 9 6 4.7162 6.8539 -1.4430 10 8 4.9684 7.4053 -0.3926 11 7 4.9964 7.4668 -2.6102 12 6 4.7449 6.9152 -3.9496 13 6 5.2008 7.9751 -4.9746 14 6 5.1597 9.2917 -4.1546 15 1 4.1495 9.6999 -4.1214 16 6 6.1448 10.3186 -4.7164 17 1 7.1522 9.9029 -4.6993 18 6 6.1019 11.5871 -3.8620 19 7 5.7752 10.6461 -6.0958 20 6 6.7247 11.1079 -6.9677 21 1 7.7459 11.2310 -6.6386 22 6 6.3744 11.4187 -8.2745 23 7 7.2872 11.8620 -9.1128 24 14 4.6080 11.2063 -8.8436 25 1 3.8566 12.4649 -8.6059 26 1 4.5902 10.8856 -10.2935 27 1 3.9728 10.0995 -8.0841 28 6 5.6071 8.8007 -2.7552 29 6 1.8770 3.5097 0.0047 30 7 1.3185 2.3141 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 4.0229 0.3695 0.0014 35 1 5.1254 2.5947 0.0008 36 1 4.8370 4.9805 0.5137 37 1 3.2181 5.7203 0.5129 38 1 3.1291 5.5228 -1.9573 39 1 4.7480 4.7830 -1.9564 40 1 3.6809 6.7133 -4.0735 41 1 5.3150 5.9966 -4.0879 42 1 4.5079 8.0222 -5.8147 43 1 6.2136 7.7672 -5.3197 44 1 6.3769 11.3434 -2.8358 45 1 5.0944 12.0028 -3.8793 46 1 6.8041 12.3186 -4.2621 47 1 4.8580 10.5359 -6.3913 48 1 7.0423 12.0795 -10.0258 49 1 6.6937 8.7276 -2.7085 50 1 5.2376 9.4733 -1.9812 51 1 1.2518 4.3903 0.0088 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754800785.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:44 Heat of formation + Delta-G solvation = -31.378575 kcal Electronic energy + Delta-G solvation = -29525.233131 eV Core-core repulsion = 25425.025674 eV Total energy + Delta-G solvation = -4100.207457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.08090 -40.17977 -38.54543 -37.93948 -35.40381 -34.51396 -32.66391 -32.43322 -30.91804 -30.04396 -29.64372 -27.94660 -27.47598 -25.40446 -24.15544 -23.79874 -22.80557 -21.80385 -21.34843 -19.88992 -19.19153 -18.81199 -17.71415 -17.56428 -17.23464 -16.41294 -16.35853 -15.76423 -15.40357 -14.97622 -14.86291 -14.75592 -14.46299 -13.96730 -13.84486 -13.73170 -13.49864 -13.47799 -13.09969 -12.83368 -12.67829 -12.57996 -12.47487 -12.34026 -12.22148 -11.95426 -11.91185 -11.58717 -11.48908 -11.42125 -11.04949 -10.84955 -10.60303 -10.52306 -10.30225 -10.28818 -10.04242 -10.00247 -9.88853 -9.61622 -8.97643 -8.77881 -8.69803 -7.31221 -5.80043 -3.15672 0.72061 0.83897 2.52844 2.68627 2.88852 3.32448 3.34725 3.36274 3.42279 3.89927 4.18182 4.47532 4.51562 4.55122 4.55627 4.66967 4.69304 4.76242 4.82810 4.88014 4.90401 4.95688 4.98238 5.18612 5.19414 5.23025 5.25196 5.39670 5.46240 5.47317 5.55485 5.57770 5.60194 5.75914 5.79176 5.83130 5.92777 5.95218 6.03022 6.08481 6.13085 6.21255 6.32114 6.40629 6.47382 6.75977 6.80713 6.98110 7.42829 7.44992 7.96064 8.05796 8.38882 9.17276 9.89671 10.09467 11.38295 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.001755 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.240934 B =15951.224885 C =16915.296288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.310 6.310 3 C 0.313 3.687 4 C -0.187 4.187 5 C -0.037 4.037 6 C -0.170 4.170 7 C -0.055 4.055 8 C -0.131 4.131 9 C 0.526 3.474 10 O -0.545 6.545 11 N -0.617 5.617 12 C 0.098 3.902 13 C -0.119 4.119 14 C -0.107 4.107 15 H 0.079 0.921 16 C 0.190 3.810 17 H 0.058 0.942 18 C -0.168 4.168 19 N -0.746 5.746 20 C -0.241 4.241 21 H 0.090 0.910 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.277 1.277 28 C 0.114 3.886 29 C 0.144 3.856 30 N -0.538 5.538 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.041 0.959 45 H 0.045 0.955 46 H 0.059 0.941 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.071 0.929 50 H 0.077 0.923 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.144 -22.166 19.241 31.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.217 6.217 3 C 0.134 3.866 4 C -0.208 4.208 5 C -0.062 4.062 6 C -0.172 4.172 7 C -0.093 4.093 8 C -0.171 4.171 9 C 0.315 3.685 10 O -0.423 6.423 11 N -0.351 5.351 12 C -0.025 4.025 13 C -0.157 4.157 14 C -0.127 4.127 15 H 0.098 0.902 16 C 0.080 3.920 17 H 0.076 0.924 18 C -0.228 4.228 19 N -0.389 5.389 20 C -0.371 4.371 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.582 5.582 24 Si 0.715 3.285 25 H -0.212 1.212 26 H -0.219 1.219 27 H -0.204 1.204 28 C -0.008 4.008 29 C -0.012 4.012 30 N -0.261 5.261 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.078 0.922 47 H 0.193 0.807 48 H 0.069 0.931 49 H 0.089 0.911 50 H 0.096 0.904 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.620 -22.215 19.743 31.911 hybrid contribution -0.679 0.089 -0.765 1.027 sum -12.299 -22.126 18.978 31.638 Atomic orbital electron populations 1.22861 0.77135 1.02966 1.02521 1.86236 1.23007 1.24621 1.87856 1.19880 0.89482 0.84726 0.92490 1.21083 0.92006 0.99617 1.08048 1.21376 1.00682 0.90699 0.93437 1.20759 0.94754 0.96441 1.05258 1.20185 1.02123 0.91494 0.95521 1.21653 1.02472 0.94074 0.98916 1.20285 0.78474 0.87450 0.82296 1.90708 1.54099 1.67000 1.30534 1.48606 1.61527 1.19203 1.05774 1.22160 1.00594 0.97751 0.82025 1.22611 1.03370 0.92930 0.96807 1.22714 1.00908 0.95884 0.93184 0.90227 1.20102 0.95670 0.91380 0.84817 0.92410 1.22454 1.01577 1.00402 0.98339 1.42725 1.08613 1.80169 1.07382 1.19055 0.91736 1.35489 0.90833 0.89206 1.24664 0.96937 1.01305 0.96227 1.69700 1.32198 1.50784 1.05473 0.86563 0.86217 0.77864 0.77887 1.21205 1.21852 1.20371 1.22287 0.97960 0.82956 0.97613 1.22351 0.92289 0.93598 0.92951 1.67334 1.40920 0.98804 1.19091 0.92298 0.92239 0.88619 0.84061 0.83953 0.89858 0.89808 0.88853 0.88851 0.91617 0.91443 0.89899 0.89762 0.94038 0.93565 0.92222 0.80724 0.93082 0.91100 0.90414 0.82332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.38 101.05 1.05 1.30 16 2 O -0.31 -2.79 10.48 -18.74 -0.20 -2.99 16 3 C 0.31 2.94 7.49 -17.12 -0.13 2.81 16 4 C -0.19 -1.44 10.04 -39.28 -0.39 -1.83 16 5 C -0.04 -0.25 9.85 -39.31 -0.39 -0.64 16 6 C -0.17 -1.25 5.15 -104.47 -0.54 -1.79 16 7 C -0.05 -0.42 4.66 -27.88 -0.13 -0.55 16 8 C -0.13 -1.04 4.87 -27.88 -0.14 -1.17 16 9 C 0.53 6.24 7.85 -10.99 -0.09 6.15 16 10 O -0.55 -8.35 16.24 5.56 0.09 -8.26 16 11 N -0.62 -7.30 3.33 -170.52 -0.57 -7.87 16 12 C 0.10 0.99 6.49 -3.06 -0.02 0.97 16 13 C -0.12 -1.53 6.13 -24.89 -0.15 -1.68 16 14 C -0.11 -1.49 2.62 -88.48 -0.23 -1.73 16 15 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 16 C 0.19 3.32 2.41 -67.93 -0.16 3.15 16 17 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 18 C -0.17 -2.78 9.34 37.16 0.35 -2.43 16 19 N -0.75 -16.30 4.62 -53.43 -0.25 -16.55 16 20 C -0.24 -6.47 10.41 -15.06 -0.16 -6.62 16 21 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 22 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 23 N -0.93 -28.61 13.97 55.49 0.78 -27.84 16 24 Si 0.88 21.34 27.73 -169.99 -4.71 16.62 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 28 C 0.11 1.49 5.56 -2.53 -0.01 1.48 16 29 C 0.14 1.16 10.85 -17.56 -0.19 0.96 16 30 N -0.54 -5.16 9.22 -13.33 -0.12 -5.29 16 31 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 33 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 36 H 0.08 0.67 8.05 -51.93 -0.42 0.25 16 37 H 0.08 0.67 8.05 -51.93 -0.42 0.26 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.08 1.16 8.04 -51.93 -0.42 0.75 16 44 H 0.04 0.58 7.45 -51.93 -0.39 0.20 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.36 7.77 5.66 -40.82 -0.23 7.53 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.07 0.93 8.00 -51.93 -0.42 0.52 16 50 H 0.08 1.06 7.96 -51.93 -0.41 0.64 16 51 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 417.20 15.07 6.29 6.29 Total: -1.00 -33.45 417.20 -8.75 -42.20 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -8.62 Total: 5.27 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.43 Total: -1.58 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.16 Total: -57.54 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.11 Total: -11.25 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.62 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.45 -8.75 -42.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754800785.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.819 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds