Wall clock time and date at job start Wed Apr 1 2020 04:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35681 * 116.99905 * 2 1 4 4 C 1.38922 * 119.68148 * 179.97438 * 3 2 1 5 5 C 1.38377 * 119.10756 * 179.97438 * 4 3 2 6 6 C 1.38824 * 118.48901 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.36128 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47481 * 89.99230 * 7 6 5 9 9 C 1.50700 * 109.47250 * 180.02562 * 8 7 6 10 10 O 1.21281 * 119.99889 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00124 * 180.02562 * 9 8 7 12 12 C 1.47021 * 125.64567 * 359.96424 * 11 9 8 13 13 C 1.54327 * 107.27200 * 178.99233 * 12 11 9 14 14 C 1.55162 * 102.94067 * 337.81304 * 13 12 11 15 15 H 1.09005 * 111.00287 * 277.39235 * 14 13 12 16 16 C 1.52992 * 111.00737 * 153.57554 * 14 13 12 17 17 H 1.08998 * 109.46862 * 301.45862 * 16 14 13 18 18 C 1.52997 * 109.47482 * 181.45297 * 16 14 13 19 19 N 1.46506 * 109.46999 * 61.44947 * 16 14 13 20 20 C 1.36936 * 119.99838 * 205.00251 * 19 16 14 21 21 H 1.07999 * 120.00085 * 359.97438 * 20 19 16 22 22 C 1.38815 * 119.99824 * 180.02562 * 20 19 16 23 23 N 1.31622 * 119.99803 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99851 * 359.97438 * 22 20 19 25 25 H 1.48494 * 109.47209 * 90.00616 * 24 22 20 26 26 H 1.48506 * 109.47027 * 210.00119 * 24 22 20 27 27 H 1.48501 * 109.47427 * 329.99828 * 24 22 20 28 28 C 1.47420 * 125.65069 * 180.02562 * 11 9 8 29 29 C 1.38052 * 119.28805 * 0.24803 * 6 5 4 30 30 N 1.31963 * 120.83512 * 359.45980 * 29 6 5 31 31 H 1.08996 * 109.47206 * 300.00465 * 1 2 3 32 32 H 1.09007 * 109.46500 * 60.00306 * 1 2 3 33 33 H 1.08998 * 109.47081 * 180.02562 * 1 2 3 34 34 H 1.08001 * 120.44619 * 359.97438 * 4 3 2 35 35 H 1.08003 * 120.75663 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.46517 * 329.99592 * 7 6 5 37 37 H 1.08997 * 109.47706 * 210.00113 * 7 6 5 38 38 H 1.09002 * 109.46949 * 60.00627 * 8 7 6 39 39 H 1.08997 * 109.47371 * 300.01088 * 8 7 6 40 40 H 1.09011 * 109.88138 * 59.57977 * 12 11 9 41 41 H 1.08995 * 110.01937 * 298.48370 * 12 11 9 42 42 H 1.09004 * 110.72059 * 219.45182 * 13 12 11 43 43 H 1.08999 * 110.72063 * 96.17342 * 13 12 11 44 44 H 1.09002 * 109.47153 * 59.99783 * 18 16 14 45 45 H 1.09001 * 109.46832 * 299.99974 * 18 16 14 46 46 H 1.09004 * 109.47261 * 179.97438 * 18 16 14 47 47 H 0.96992 * 120.00062 * 25.00521 * 19 16 14 48 48 H 0.97000 * 119.99658 * 180.02562 * 23 22 20 49 49 H 1.09006 * 110.36434 * 85.24118 * 28 11 9 50 50 H 1.09000 * 110.36708 * 322.91686 * 28 11 9 51 51 H 1.08000 * 119.57883 * 179.72724 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2505 3.6491 -0.0005 7 6 3.8767 5.0199 -0.0006 8 6 4.0894 5.4835 -1.4430 9 6 4.7162 6.8539 -1.4430 10 8 4.9684 7.4053 -0.3926 11 7 4.9964 7.4668 -2.6102 12 6 4.7449 6.9152 -3.9496 13 6 5.2008 7.9751 -4.9746 14 6 5.1597 9.2917 -4.1546 15 1 4.1495 9.6999 -4.1214 16 6 6.1448 10.3186 -4.7164 17 1 7.1522 9.9029 -4.6993 18 6 6.1019 11.5871 -3.8620 19 7 5.7752 10.6461 -6.0958 20 6 6.7247 11.1079 -6.9677 21 1 7.7459 11.2310 -6.6386 22 6 6.3744 11.4187 -8.2745 23 7 7.2872 11.8620 -9.1128 24 14 4.6080 11.2063 -8.8436 25 1 3.8566 12.4649 -8.6059 26 1 4.5902 10.8856 -10.2935 27 1 3.9728 10.0995 -8.0841 28 6 5.6071 8.8007 -2.7552 29 6 1.8770 3.5097 0.0047 30 7 1.3185 2.3141 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 4.0229 0.3695 0.0014 35 1 5.1254 2.5947 0.0008 36 1 4.8370 4.9805 0.5137 37 1 3.2181 5.7203 0.5129 38 1 3.1291 5.5228 -1.9573 39 1 4.7480 4.7830 -1.9564 40 1 3.6809 6.7133 -4.0735 41 1 5.3150 5.9966 -4.0879 42 1 4.5079 8.0222 -5.8147 43 1 6.2136 7.7672 -5.3197 44 1 6.3769 11.3434 -2.8358 45 1 5.0944 12.0028 -3.8793 46 1 6.8041 12.3186 -4.2621 47 1 4.8580 10.5359 -6.3913 48 1 7.0423 12.0795 -10.0258 49 1 6.6937 8.7276 -2.7085 50 1 5.2376 9.4733 -1.9812 51 1 1.2518 4.3903 0.0088 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754800785.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:43 Heat of formation + Delta-G solvation = -53.669464 kcal Electronic energy + Delta-G solvation = -29526.199737 eV Core-core repulsion = 25425.025674 eV Total energy + Delta-G solvation = -4101.174063 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.66636 -41.11474 -39.30112 -38.88129 -36.88021 -35.16684 -34.26153 -33.18546 -32.27013 -31.09109 -30.70924 -28.94949 -28.15377 -26.38765 -25.49122 -24.42341 -23.92270 -22.73975 -22.35522 -21.29592 -20.06583 -19.53934 -19.36945 -18.20500 -18.11124 -17.45849 -16.98123 -16.74201 -16.44044 -16.02194 -15.79837 -15.45113 -15.37427 -15.13779 -15.01991 -14.69120 -14.50405 -14.33731 -14.07218 -14.02196 -13.88876 -13.75425 -13.48549 -13.33238 -13.14411 -12.94007 -12.87202 -12.81679 -12.52638 -12.40162 -12.05834 -12.01417 -11.94182 -11.89157 -11.69181 -11.65974 -11.38001 -10.98421 -10.93120 -10.78641 -10.59240 -9.63371 -9.36146 -9.27868 -7.97385 -5.30128 0.15185 0.28857 1.40351 1.44698 1.51889 1.65214 2.00697 2.17223 2.52776 2.76261 3.30212 3.34994 3.37378 3.57984 3.68121 3.83322 3.94912 3.96757 4.02359 4.09709 4.21281 4.28738 4.34156 4.37033 4.40514 4.42363 4.46236 4.51183 4.58231 4.64445 4.71975 4.73606 4.75842 4.80787 4.90309 4.94303 4.98169 5.00954 5.05968 5.16046 5.18364 5.23410 5.34242 5.38040 5.39578 5.51531 5.58791 5.82774 6.24140 6.26262 6.56611 6.84907 7.13367 7.16426 7.89297 8.09275 9.24287 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.001755 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.240934 B =15951.224885 C =16915.296288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C 0.292 3.708 4 C -0.192 4.192 5 C -0.034 4.034 6 C -0.165 4.165 7 C -0.047 4.047 8 C -0.122 4.122 9 C 0.523 3.477 10 O -0.586 6.586 11 N -0.619 5.619 12 C 0.104 3.896 13 C -0.121 4.121 14 C -0.097 4.097 15 H 0.087 0.913 16 C 0.185 3.815 17 H 0.045 0.955 18 C -0.161 4.161 19 N -0.745 5.745 20 C -0.222 4.222 21 H 0.054 0.946 22 C -0.067 4.067 23 N -0.987 5.987 24 Si 0.953 3.047 25 H -0.285 1.285 26 H -0.301 1.301 27 H -0.242 1.242 28 C 0.119 3.881 29 C 0.134 3.866 30 N -0.558 5.558 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.120 0.880 34 H 0.156 0.844 35 H 0.166 0.834 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.031 0.969 47 H 0.366 0.634 48 H 0.255 0.745 49 H 0.066 0.934 50 H 0.072 0.928 51 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.149 -24.200 20.156 34.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.231 6.231 3 C 0.113 3.887 4 C -0.212 4.212 5 C -0.059 4.059 6 C -0.168 4.168 7 C -0.086 4.086 8 C -0.161 4.161 9 C 0.314 3.686 10 O -0.466 6.466 11 N -0.352 5.352 12 C -0.018 4.018 13 C -0.159 4.159 14 C -0.117 4.117 15 H 0.105 0.895 16 C 0.077 3.923 17 H 0.063 0.937 18 C -0.221 4.221 19 N -0.388 5.388 20 C -0.353 4.353 21 H 0.072 0.928 22 C -0.258 4.258 23 N -0.638 5.638 24 Si 0.781 3.219 25 H -0.212 1.212 26 H -0.228 1.228 27 H -0.166 1.166 28 C -0.005 4.005 29 C -0.021 4.021 30 N -0.281 5.281 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.174 0.826 35 H 0.183 0.817 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.050 0.950 47 H 0.199 0.801 48 H 0.064 0.936 49 H 0.084 0.916 50 H 0.090 0.910 51 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.650 -24.287 20.708 34.713 hybrid contribution 0.049 0.746 -0.948 1.208 sum -13.602 -23.541 19.759 33.610 Atomic orbital electron populations 1.23003 0.76107 1.04461 1.02074 1.86215 1.24158 1.24792 1.87980 1.20212 0.90312 0.84831 0.93317 1.21332 0.91569 1.00650 1.07680 1.21667 1.01828 0.90105 0.92319 1.20723 0.94516 0.96418 1.05122 1.20077 1.01709 0.91375 0.95396 1.21667 1.03325 0.91713 0.99404 1.20969 0.77727 0.88440 0.81452 1.90695 1.55797 1.68233 1.31911 1.48677 1.61253 1.18615 1.06671 1.22221 1.02371 0.97264 0.79962 1.22585 1.02696 0.93102 0.97468 1.22503 0.99878 0.95440 0.93879 0.89483 1.20268 0.96250 0.92795 0.82972 0.93708 1.22342 1.01184 0.99075 0.99465 1.42670 1.07855 1.79870 1.08443 1.18986 0.91224 1.33636 0.91445 0.92782 1.25481 1.01651 1.02127 0.96511 1.69895 1.34851 1.53282 1.05777 0.85432 0.80688 0.78771 0.77001 1.21185 1.22797 1.16631 1.22106 0.97789 0.83985 0.96589 1.22653 0.92976 0.93640 0.92865 1.67326 1.41608 0.99340 1.19841 0.92706 0.92674 0.86207 0.82645 0.81683 0.90342 0.90455 0.87044 0.86892 0.89225 0.89286 0.89941 0.91247 0.91402 0.92972 0.94957 0.80101 0.93589 0.91616 0.90972 0.80932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.38 113.37 1.18 1.63 16 2 O -0.32 -5.57 10.48 -89.99 -0.94 -6.52 16 3 C 0.29 5.16 7.49 84.79 0.63 5.80 16 4 C -0.19 -2.59 10.04 22.47 0.23 -2.37 16 5 C -0.03 -0.38 9.85 22.44 0.22 -0.15 16 6 C -0.17 -2.03 5.15 -19.77 -0.10 -2.13 16 7 C -0.05 -0.60 4.66 29.85 0.14 -0.46 16 8 C -0.12 -1.48 4.87 29.85 0.15 -1.34 16 9 C 0.52 10.99 7.85 87.66 0.69 11.68 16 10 O -0.59 -17.03 16.24 -3.03 -0.05 -17.08 16 11 N -0.62 -12.81 3.33 -811.79 -2.70 -15.51 16 12 C 0.10 1.69 6.49 86.73 0.56 2.25 16 13 C -0.12 -2.76 6.13 31.79 0.19 -2.57 16 14 C -0.10 -2.50 2.62 -9.40 -0.02 -2.53 16 15 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 16 C 0.19 6.33 2.41 44.99 0.11 6.43 16 17 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 18 C -0.16 -5.21 9.34 71.98 0.67 -4.54 16 19 N -0.75 -31.90 4.62 -322.95 -1.49 -33.40 16 20 C -0.22 -12.08 10.41 84.03 0.87 -11.20 16 21 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16 22 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 23 N -0.99 -62.32 13.97 21.65 0.30 -62.01 16 24 Si 0.95 43.73 27.73 68.60 1.90 45.63 16 25 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 27 H -0.24 -9.57 6.52 99.48 0.65 -8.92 16 28 C 0.12 2.86 5.56 86.85 0.48 3.35 16 29 C 0.13 1.91 10.85 84.63 0.92 2.83 16 30 N -0.56 -10.07 9.22 -308.94 -2.85 -12.91 16 31 H 0.05 0.67 8.10 -2.39 -0.02 0.65 16 32 H 0.05 0.68 8.10 -2.38 -0.02 0.66 16 33 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 35 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 36 H 0.08 1.09 8.05 -2.39 -0.02 1.07 16 37 H 0.08 1.10 8.05 -2.39 -0.02 1.08 16 38 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.07 1.80 8.04 -2.39 -0.02 1.78 16 44 H 0.07 1.83 7.45 -2.39 -0.02 1.81 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.03 1.19 8.14 -2.38 -0.02 1.18 16 47 H 0.37 14.90 5.66 -92.71 -0.52 14.37 16 48 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 49 H 0.07 1.65 8.00 -2.38 -0.02 1.63 16 50 H 0.07 1.84 7.96 -2.39 -0.02 1.82 16 51 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -74.67 417.20 1.89 -72.78 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.33 Total: 25.68 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 7.39 Total: 3.33 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -6.74 Total: -123.83 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.99 Total: -23.59 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.90 Total: 45.63 kcal Total: -74.67 1.89 -72.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754800785.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.111 kcal (2) G-P(sol) polarization free energy of solvation -74.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds