Wall clock time and date at job start Wed Apr 1 2020 04:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.46901 * 2 1 4 4 C 1.50697 * 109.47165 * 240.00363 * 2 1 3 5 5 H 1.07996 * 120.00262 * 245.65864 * 4 2 1 6 6 C 1.37880 * 120.00050 * 65.65955 * 4 2 1 7 7 N 1.31515 * 120.00140 * 197.07771 * 6 4 2 8 8 Si 1.86796 * 120.00055 * 17.07418 * 6 4 2 9 9 H 1.48500 * 109.47225 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47452 * 300.00172 * 8 6 4 11 11 H 1.48501 * 109.47298 * 60.00129 * 8 6 4 12 12 C 1.50695 * 109.47413 * 119.99864 * 2 1 3 13 13 O 1.21285 * 119.99611 * 119.99797 * 12 2 1 14 14 N 1.34778 * 120.00365 * 300.00383 * 12 2 1 15 15 C 1.48187 * 127.79353 * 0.02562 * 14 12 2 16 16 C 1.54509 * 104.63318 * 219.27452 * 15 14 12 17 17 H 1.09000 * 110.37906 * 95.02218 * 16 15 14 18 18 C 1.50700 * 110.37841 * 217.37803 * 16 15 14 19 19 C 1.39866 * 126.03757 * 232.74169 * 18 16 15 20 20 N 1.30839 * 108.20537 * 179.97438 * 19 18 16 21 21 N 1.40085 * 108.20113 * 359.97438 * 20 19 18 22 22 C 1.46495 * 126.03732 * 180.02562 * 21 20 19 23 23 C 1.34950 * 107.92543 * 359.75767 * 21 20 19 24 24 C 1.53803 * 104.77436 * 336.20326 * 16 15 14 25 25 C 1.48259 * 127.79686 * 179.70346 * 14 12 2 26 26 C 1.52598 * 110.21718 * 241.20693 * 24 16 15 27 27 C 1.53209 * 109.19443 * 293.62803 * 26 24 16 28 28 O 1.42905 * 109.33896 * 303.32796 * 27 26 24 29 29 C 1.42912 * 114.22895 * 61.60917 * 28 27 26 30 30 C 1.52585 * 110.22283 * 119.12167 * 24 16 15 31 31 H 1.09001 * 109.47084 * 186.90801 * 1 2 3 32 32 H 1.09004 * 109.46846 * 306.90327 * 1 2 3 33 33 H 1.09002 * 109.47124 * 66.90617 * 1 2 3 34 34 H 0.96999 * 120.00128 * 355.45478 * 7 6 4 35 35 H 1.08996 * 110.41001 * 338.06699 * 15 14 12 36 36 H 1.09009 * 110.40338 * 100.48881 * 15 14 12 37 37 H 1.08002 * 125.90211 * 359.95519 * 19 18 16 38 38 H 1.09002 * 109.47803 * 89.97061 * 22 21 20 39 39 H 1.09003 * 109.47406 * 209.97124 * 22 21 20 40 40 H 1.09001 * 109.47037 * 329.96684 * 22 21 20 41 41 H 1.08001 * 126.12871 * 180.24256 * 23 21 20 42 42 H 1.09005 * 110.42903 * 259.64950 * 25 14 12 43 43 H 1.08994 * 110.43028 * 22.13249 * 25 14 12 44 44 H 1.08990 * 109.51914 * 53.54990 * 26 24 16 45 45 H 1.09008 * 109.51242 * 173.71849 * 26 24 16 46 46 H 1.09003 * 109.48945 * 183.36792 * 27 26 24 47 47 H 1.08997 * 109.48719 * 63.28671 * 27 26 24 48 48 H 1.08996 * 109.49568 * 178.43327 * 29 28 27 49 49 H 1.08993 * 109.49783 * 58.34298 * 29 28 27 50 50 H 1.09003 * 109.52097 * 186.27927 * 30 24 16 51 51 H 1.09005 * 109.51811 * 306.44687 * 30 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5758 -1.6386 -1.1341 6 6 1.7981 -0.1751 -2.4794 7 7 1.9250 -0.9265 -3.5512 8 14 1.3006 1.6174 -2.6490 9 1 1.1089 1.9442 -4.0849 10 1 0.0309 1.8504 -1.9151 11 1 2.3660 2.4827 -2.0820 12 6 2.0324 -0.7103 1.2304 13 8 2.7297 -1.6965 1.1190 14 7 1.7068 -0.2500 2.4546 15 6 0.8729 0.9283 2.7895 16 6 1.5770 1.5721 4.0049 17 1 2.2461 2.3680 3.6781 18 6 0.5587 2.1075 4.9783 19 6 0.5173 3.4068 5.4942 20 7 -0.5069 3.4927 6.3038 21 7 -1.1510 2.2490 6.3282 22 6 -2.3446 1.9116 7.1076 23 6 -0.4811 1.4182 5.5022 24 6 2.3795 0.4269 4.6451 25 6 2.0968 -0.8118 3.7700 26 6 1.8996 0.1804 6.0725 27 6 2.2404 1.3991 6.9361 28 8 3.6461 1.6478 6.8701 29 6 4.1270 1.9514 5.5590 30 6 3.8692 0.7568 4.6349 31 1 -0.3633 -1.0202 0.1236 32 1 -0.3633 0.6171 0.8218 33 1 -0.3633 0.4031 -0.9453 34 1 2.2467 -1.8379 -3.4693 35 1 0.8465 1.6257 1.9522 36 1 -0.1367 0.6158 3.0567 37 1 1.2112 4.2019 5.2644 38 1 -3.2360 2.1213 6.5163 39 1 -2.3218 0.8533 7.3676 40 1 -2.3643 2.5092 8.0190 41 1 -0.7288 0.3869 5.2983 42 1 1.2802 -1.3991 4.1900 43 1 2.9943 -1.4224 3.6719 44 1 0.8209 0.0244 6.0722 45 1 2.3959 -0.7022 6.4762 46 1 1.9536 1.2042 7.9695 47 1 1.6992 2.2698 6.5660 48 1 5.1971 2.1538 5.6019 49 1 3.6057 2.8279 5.1743 50 1 4.4356 -0.1052 4.9875 51 1 4.1798 1.0075 3.6205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771797528.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:07 Heat of formation + Delta-G solvation = 23.565672 kcal Electronic energy + Delta-G solvation = -33079.070502 eV Core-core repulsion = 28981.245606 eV Total energy + Delta-G solvation = -4097.824896 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.33481 -40.16922 -38.67287 -36.85993 -33.90734 -33.81922 -33.09458 -31.82856 -31.04089 -30.88641 -28.73587 -27.36150 -26.62794 -24.90117 -23.98429 -23.76103 -22.87496 -21.41934 -21.23260 -20.51546 -19.05683 -18.28628 -17.33429 -17.19663 -16.47838 -16.27728 -16.01170 -15.68192 -15.25509 -15.04879 -14.75665 -14.54676 -14.11914 -14.00410 -13.79032 -13.57718 -13.33398 -13.13429 -13.03443 -12.88498 -12.70141 -12.54124 -12.43181 -12.00942 -11.85705 -11.72897 -11.45999 -11.38766 -11.27922 -11.03822 -10.98190 -10.75654 -10.52195 -10.44914 -10.38508 -10.15392 -9.78763 -9.63832 -9.44967 -8.86386 -8.75895 -8.40187 -8.21497 -8.17870 -6.44958 -4.02560 1.58939 2.23549 2.47233 3.32982 3.39586 3.46492 3.52255 3.59753 3.82067 4.17346 4.40145 4.44221 4.48255 4.56164 4.59972 4.77687 4.82244 4.91914 4.94667 5.04144 5.07949 5.09026 5.20779 5.27981 5.29874 5.39315 5.43154 5.51576 5.52865 5.61543 5.64677 5.65876 5.76412 5.84882 5.86637 5.95288 6.00080 6.05436 6.16683 6.20679 6.22309 6.35728 6.42565 6.48641 6.67213 6.70361 6.94318 7.14240 7.23816 7.41347 7.83608 8.23849 8.48727 9.04441 9.09043 9.66472 10.97244 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013369 B = 0.003580 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.841673 B = 7820.203908 C = 8717.537328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.009 3.991 3 H 0.043 0.957 4 C -0.589 4.589 5 H 0.074 0.926 6 C 0.030 3.970 7 N -0.905 5.905 8 Si 1.042 2.958 9 H -0.284 1.284 10 H -0.274 1.274 11 H -0.283 1.283 12 C 0.549 3.451 13 O -0.534 6.534 14 N -0.634 5.634 15 C 0.114 3.886 16 C -0.021 4.021 17 H 0.091 0.909 18 C -0.215 4.215 19 C 0.054 3.946 20 N -0.294 5.294 21 N -0.376 5.376 22 C 0.102 3.898 23 C 0.059 3.941 24 C -0.063 4.063 25 C 0.114 3.886 26 C -0.140 4.140 27 C 0.045 3.955 28 O -0.385 6.385 29 C 0.064 3.936 30 C -0.139 4.139 31 H 0.045 0.955 32 H 0.031 0.969 33 H 0.063 0.937 34 H 0.269 0.731 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.182 0.818 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.174 0.826 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.051 0.949 50 H 0.072 0.928 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.309 8.440 24.467 26.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 H 0.060 0.940 4 C -0.627 4.627 5 H 0.092 0.908 6 C -0.175 4.175 7 N -0.539 5.539 8 Si 0.870 3.130 9 H -0.210 1.210 10 H -0.200 1.200 11 H -0.209 1.209 12 C 0.341 3.659 13 O -0.408 6.408 14 N -0.371 5.371 15 C -0.010 4.010 16 C -0.042 4.042 17 H 0.109 0.891 18 C -0.226 4.226 19 C -0.132 4.132 20 N -0.115 5.115 21 N -0.159 5.159 22 C -0.040 4.040 23 C -0.086 4.086 24 C -0.064 4.064 25 C -0.010 4.010 26 C -0.178 4.178 27 C -0.032 4.032 28 O -0.304 6.304 29 C -0.013 4.013 30 C -0.177 4.177 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.199 0.801 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.191 0.809 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.109 0.891 49 H 0.069 0.931 50 H 0.091 0.909 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.037 9.679 24.168 26.969 hybrid contribution 0.657 -1.842 0.387 1.994 sum -6.380 7.837 24.556 26.554 Atomic orbital electron populations 1.22284 0.97102 1.00491 1.00673 1.19136 0.93613 0.96719 0.91821 0.93972 1.21956 1.40298 1.10779 0.89690 0.90796 1.25740 0.94865 1.04887 0.92004 1.70829 1.41810 1.10058 1.31249 0.84098 0.76955 0.75581 0.76326 1.20983 1.20029 1.20919 1.21242 0.78326 0.84002 0.82354 1.90575 1.37881 1.26814 1.85569 1.49327 1.53021 1.29804 1.04951 1.22485 0.93778 0.88072 0.96697 1.20544 0.94185 0.96835 0.92629 0.89115 1.19706 1.00938 0.94608 1.07388 1.23720 0.96518 0.97051 0.95905 1.77399 1.09765 1.01217 1.23149 1.48415 1.23550 1.08267 1.35645 1.21856 0.84086 1.02007 0.96028 1.22242 0.94177 0.97239 0.94980 1.21170 0.95277 0.95259 0.94699 1.22280 1.00630 0.94756 0.83316 1.22287 1.01855 0.99224 0.94458 1.23165 0.82342 0.98216 0.99448 1.87870 1.23391 1.90638 1.28526 1.22583 0.99509 0.96114 0.83110 1.22145 0.95010 0.99630 1.00923 0.93560 0.95042 0.91793 0.92062 0.89619 0.91621 0.80132 0.90703 0.89514 0.89312 0.80899 0.92034 0.90182 0.90288 0.91449 0.90486 0.90279 0.89130 0.93103 0.90913 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.54 37.16 0.32 -2.74 16 2 C 0.01 0.21 1.55 -92.93 -0.14 0.06 16 3 H 0.04 0.96 6.61 -51.92 -0.34 0.61 16 4 C -0.59 -17.06 8.63 -34.44 -0.30 -17.36 16 5 H 0.07 2.43 7.02 -52.49 -0.37 2.07 16 6 C 0.03 0.86 5.30 -17.82 -0.09 0.77 16 7 N -0.91 -28.10 13.70 55.43 0.76 -27.34 16 8 Si 1.04 24.42 26.27 -169.99 -4.47 19.95 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 10 H -0.27 -5.74 5.75 56.52 0.32 -5.41 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.55 12.29 7.26 -10.99 -0.08 12.21 16 13 O -0.53 -14.19 15.74 5.55 0.09 -14.10 16 14 N -0.63 -10.52 3.31 -169.17 -0.56 -11.08 16 15 C 0.11 1.45 4.84 -2.32 -0.01 1.44 16 16 C -0.02 -0.22 2.55 -90.56 -0.23 -0.45 16 17 H 0.09 0.93 6.81 -51.93 -0.35 0.58 16 18 C -0.21 -1.96 2.64 -105.06 -0.28 -2.24 16 19 C 0.05 0.51 9.76 -17.37 -0.17 0.34 16 20 N -0.29 -3.03 12.58 30.62 0.39 -2.65 16 21 N -0.38 -3.11 4.01 -68.16 -0.27 -3.38 16 22 C 0.10 0.47 11.47 59.84 0.69 1.15 16 23 C 0.06 0.48 7.70 -17.22 -0.13 0.35 16 24 C -0.06 -0.68 0.68 -153.84 -0.11 -0.78 16 25 C 0.11 1.55 6.15 -2.40 -0.01 1.53 16 26 C -0.14 -1.31 4.27 -26.83 -0.11 -1.43 16 27 C 0.04 0.44 6.21 37.27 0.23 0.68 16 28 O -0.39 -4.49 10.75 -35.23 -0.38 -4.87 16 29 C 0.06 0.64 6.63 37.27 0.25 0.89 16 30 C -0.14 -1.55 4.63 -26.83 -0.12 -1.68 16 31 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 32 H 0.03 0.52 5.54 -51.93 -0.29 0.23 16 33 H 0.06 1.38 4.86 -51.93 -0.25 1.13 16 34 H 0.27 8.45 8.73 -40.82 -0.36 8.09 16 35 H 0.09 1.16 6.48 -51.93 -0.34 0.82 16 36 H 0.07 0.76 7.09 -51.92 -0.37 0.39 16 37 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.17 1.13 7.19 -52.49 -0.38 0.75 16 42 H 0.06 0.75 7.86 -51.93 -0.41 0.34 16 43 H 0.08 1.24 7.60 -51.93 -0.39 0.85 16 44 H 0.08 0.64 4.44 -51.93 -0.23 0.41 16 45 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.78 3.11 -51.93 -0.16 0.61 16 48 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.05 0.47 6.98 -51.93 -0.36 0.10 16 50 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 51 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 376.75 15.07 5.68 5.68 Total: -1.00 -35.89 376.75 -6.78 -42.67 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.70 Total: 2.36 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.31 Total: -7.25 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.31 Total: -44.45 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.29 Total: -18.96 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -4.47 Total: 19.95 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.89 -6.78 -42.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771797528.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.239 kcal (2) G-P(sol) polarization free energy of solvation -35.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds