Wall clock time and date at job start Wed Apr 1 2020 04:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.46901 * 2 1 4 4 C 1.50697 * 109.47165 * 240.00363 * 2 1 3 5 5 H 1.07996 * 120.00262 * 245.65864 * 4 2 1 6 6 C 1.37880 * 120.00050 * 65.65955 * 4 2 1 7 7 N 1.31515 * 120.00140 * 197.07771 * 6 4 2 8 8 Si 1.86796 * 120.00055 * 17.07418 * 6 4 2 9 9 H 1.48500 * 109.47225 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47452 * 300.00172 * 8 6 4 11 11 H 1.48501 * 109.47298 * 60.00129 * 8 6 4 12 12 C 1.50695 * 109.47413 * 119.99864 * 2 1 3 13 13 O 1.21285 * 119.99611 * 119.99797 * 12 2 1 14 14 N 1.34778 * 120.00365 * 300.00383 * 12 2 1 15 15 C 1.48187 * 127.79353 * 0.02562 * 14 12 2 16 16 C 1.54509 * 104.63318 * 219.27452 * 15 14 12 17 17 H 1.09000 * 110.37906 * 95.02218 * 16 15 14 18 18 C 1.50700 * 110.37841 * 217.37803 * 16 15 14 19 19 C 1.39866 * 126.03757 * 232.74169 * 18 16 15 20 20 N 1.30839 * 108.20537 * 179.97438 * 19 18 16 21 21 N 1.40085 * 108.20113 * 359.97438 * 20 19 18 22 22 C 1.46495 * 126.03732 * 180.02562 * 21 20 19 23 23 C 1.34950 * 107.92543 * 359.75767 * 21 20 19 24 24 C 1.53803 * 104.77436 * 336.20326 * 16 15 14 25 25 C 1.48259 * 127.79686 * 179.70346 * 14 12 2 26 26 C 1.52598 * 110.21718 * 241.20693 * 24 16 15 27 27 C 1.53209 * 109.19443 * 293.62803 * 26 24 16 28 28 O 1.42905 * 109.33896 * 303.32796 * 27 26 24 29 29 C 1.42912 * 114.22895 * 61.60917 * 28 27 26 30 30 C 1.52585 * 110.22283 * 119.12167 * 24 16 15 31 31 H 1.09001 * 109.47084 * 186.90801 * 1 2 3 32 32 H 1.09004 * 109.46846 * 306.90327 * 1 2 3 33 33 H 1.09002 * 109.47124 * 66.90617 * 1 2 3 34 34 H 0.96999 * 120.00128 * 355.45478 * 7 6 4 35 35 H 1.08996 * 110.41001 * 338.06699 * 15 14 12 36 36 H 1.09009 * 110.40338 * 100.48881 * 15 14 12 37 37 H 1.08002 * 125.90211 * 359.95519 * 19 18 16 38 38 H 1.09002 * 109.47803 * 89.97061 * 22 21 20 39 39 H 1.09003 * 109.47406 * 209.97124 * 22 21 20 40 40 H 1.09001 * 109.47037 * 329.96684 * 22 21 20 41 41 H 1.08001 * 126.12871 * 180.24256 * 23 21 20 42 42 H 1.09005 * 110.42903 * 259.64950 * 25 14 12 43 43 H 1.08994 * 110.43028 * 22.13249 * 25 14 12 44 44 H 1.08990 * 109.51914 * 53.54990 * 26 24 16 45 45 H 1.09008 * 109.51242 * 173.71849 * 26 24 16 46 46 H 1.09003 * 109.48945 * 183.36792 * 27 26 24 47 47 H 1.08997 * 109.48719 * 63.28671 * 27 26 24 48 48 H 1.08996 * 109.49568 * 178.43327 * 29 28 27 49 49 H 1.08993 * 109.49783 * 58.34298 * 29 28 27 50 50 H 1.09003 * 109.52097 * 186.27927 * 30 24 16 51 51 H 1.09005 * 109.51811 * 306.44687 * 30 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5758 -1.6386 -1.1341 6 6 1.7981 -0.1751 -2.4794 7 7 1.9250 -0.9265 -3.5512 8 14 1.3006 1.6174 -2.6490 9 1 1.1089 1.9442 -4.0849 10 1 0.0309 1.8504 -1.9151 11 1 2.3660 2.4827 -2.0820 12 6 2.0324 -0.7103 1.2304 13 8 2.7297 -1.6965 1.1190 14 7 1.7068 -0.2500 2.4546 15 6 0.8729 0.9283 2.7895 16 6 1.5770 1.5721 4.0049 17 1 2.2461 2.3680 3.6781 18 6 0.5587 2.1075 4.9783 19 6 0.5173 3.4068 5.4942 20 7 -0.5069 3.4927 6.3038 21 7 -1.1510 2.2490 6.3282 22 6 -2.3446 1.9116 7.1076 23 6 -0.4811 1.4182 5.5022 24 6 2.3795 0.4269 4.6451 25 6 2.0968 -0.8118 3.7700 26 6 1.8996 0.1804 6.0725 27 6 2.2404 1.3991 6.9361 28 8 3.6461 1.6478 6.8701 29 6 4.1270 1.9514 5.5590 30 6 3.8692 0.7568 4.6349 31 1 -0.3633 -1.0202 0.1236 32 1 -0.3633 0.6171 0.8218 33 1 -0.3633 0.4031 -0.9453 34 1 2.2467 -1.8379 -3.4693 35 1 0.8465 1.6257 1.9522 36 1 -0.1367 0.6158 3.0567 37 1 1.2112 4.2019 5.2644 38 1 -3.2360 2.1213 6.5163 39 1 -2.3218 0.8533 7.3676 40 1 -2.3643 2.5092 8.0190 41 1 -0.7288 0.3869 5.2983 42 1 1.2802 -1.3991 4.1900 43 1 2.9943 -1.4224 3.6719 44 1 0.8209 0.0244 6.0722 45 1 2.3959 -0.7022 6.4762 46 1 1.9536 1.2042 7.9695 47 1 1.6992 2.2698 6.5660 48 1 5.1971 2.1538 5.6019 49 1 3.6057 2.8279 5.1743 50 1 4.4356 -0.1052 4.9875 51 1 4.1798 1.0075 3.6205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771797528.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:06 Heat of formation + Delta-G solvation = -2.753060 kcal Electronic energy + Delta-G solvation = -33080.211768 eV Core-core repulsion = 28981.245606 eV Total energy + Delta-G solvation = -4098.966162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.06960 -41.16549 -40.03641 -38.04556 -35.86189 -34.70737 -34.11471 -32.99944 -32.56510 -31.73468 -29.46758 -28.47178 -27.34111 -26.79357 -25.20925 -24.69234 -23.75902 -22.96386 -21.87075 -21.22499 -20.29104 -19.66048 -19.22759 -17.88104 -17.79014 -17.24598 -16.98790 -16.67254 -16.32087 -16.20076 -15.71855 -15.48803 -15.22428 -15.20444 -14.91445 -14.69353 -14.51773 -14.31140 -14.03151 -13.87851 -13.77724 -13.58337 -13.34822 -13.31739 -13.12478 -12.94025 -12.85001 -12.67535 -12.41585 -12.20493 -12.11092 -11.95480 -11.84796 -11.55948 -11.50069 -11.31431 -11.18231 -10.98666 -10.62476 -10.43261 -10.30553 -10.12405 -9.65604 -9.00057 -8.78177 -6.36752 0.98998 1.47444 1.58175 1.72897 1.75485 1.78731 1.85840 2.10217 2.53486 3.04165 3.08622 3.36983 3.59907 3.64523 3.77566 3.96410 4.03056 4.11844 4.13528 4.20541 4.25272 4.35843 4.40267 4.43803 4.52386 4.54062 4.56836 4.63670 4.68229 4.71247 4.73771 4.79351 4.80608 4.82551 4.84315 4.88224 4.93708 4.95714 5.03223 5.09973 5.17156 5.19500 5.28409 5.39331 5.47420 5.55102 5.72065 5.88843 6.04790 6.17447 6.35858 6.59665 6.67235 6.80319 7.38822 7.46028 8.62768 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013369 B = 0.003580 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.841673 B = 7820.203908 C = 8717.537328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.005 3.995 3 H 0.063 0.937 4 C -0.601 4.601 5 H 0.012 0.988 6 C -0.023 4.023 7 N -0.938 5.938 8 Si 1.084 2.916 9 H -0.291 1.291 10 H -0.224 1.224 11 H -0.260 1.260 12 C 0.544 3.456 13 O -0.595 6.595 14 N -0.626 5.626 15 C 0.104 3.896 16 C -0.007 4.007 17 H 0.095 0.905 18 C -0.225 4.225 19 C 0.050 3.950 20 N -0.323 5.323 21 N -0.374 5.374 22 C 0.092 3.908 23 C 0.065 3.935 24 C -0.053 4.053 25 C 0.110 3.890 26 C -0.132 4.132 27 C 0.045 3.955 28 O -0.403 6.403 29 C 0.067 3.933 30 C -0.140 4.140 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.247 0.753 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.193 0.807 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.195 0.805 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.098 0.902 45 H 0.062 0.938 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.064 0.936 50 H 0.061 0.939 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.947 11.423 27.260 30.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.017 4.017 3 H 0.081 0.919 4 C -0.638 4.638 5 H 0.030 0.970 6 C -0.219 4.219 7 N -0.574 5.574 8 Si 0.903 3.097 9 H -0.217 1.217 10 H -0.147 1.147 11 H -0.184 1.184 12 C 0.335 3.665 13 O -0.475 6.475 14 N -0.359 5.359 15 C -0.018 4.018 16 C -0.028 4.028 17 H 0.113 0.887 18 C -0.237 4.237 19 C -0.135 4.135 20 N -0.145 5.145 21 N -0.156 5.156 22 C -0.048 4.048 23 C -0.081 4.081 24 C -0.054 4.054 25 C -0.012 4.012 26 C -0.170 4.170 27 C -0.031 4.031 28 O -0.322 6.322 29 C -0.010 4.010 30 C -0.178 4.178 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.210 0.790 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.211 0.789 42 H 0.102 0.898 43 H 0.071 0.929 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.099 0.901 47 H 0.103 0.897 48 H 0.116 0.884 49 H 0.083 0.917 50 H 0.080 0.920 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.715 12.688 27.061 31.427 hybrid contribution 1.500 -2.869 -0.363 3.258 sum -8.215 9.819 26.698 29.608 Atomic orbital electron populations 1.22141 0.94281 1.00764 1.02391 1.19075 0.95650 0.96804 0.90167 0.91923 1.22061 1.39784 1.09054 0.92947 0.96984 1.27512 0.94052 1.09129 0.91246 1.70992 1.44458 1.09339 1.32604 0.83660 0.79645 0.69550 0.76852 1.21724 1.14720 1.18444 1.20963 0.78088 0.83399 0.84023 1.90552 1.40775 1.29468 1.86745 1.49097 1.52102 1.30529 1.04202 1.22863 0.94492 0.86605 0.97854 1.20358 0.94248 0.96324 0.91835 0.88704 1.19511 1.01318 0.94844 1.08002 1.23948 0.96501 0.97462 0.95555 1.77382 1.10508 1.02607 1.24005 1.48696 1.23911 1.07596 1.35406 1.22170 0.83095 1.03645 0.95898 1.22563 0.93519 0.97934 0.94126 1.21073 0.95144 0.94014 0.95141 1.22513 1.00365 0.96091 0.82271 1.22242 1.02917 0.98927 0.92915 1.23246 0.81619 0.98493 0.99783 1.87854 1.24438 1.90759 1.29145 1.22614 1.00271 0.95746 0.82351 1.22125 0.95358 0.99948 1.00345 0.94962 0.90068 0.92289 0.94456 0.89438 0.89125 0.79027 0.89886 0.87032 0.89101 0.78851 0.89756 0.92882 0.88368 0.91889 0.90103 0.89702 0.88398 0.91739 0.91993 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 8.54 71.98 0.61 -4.73 16 2 C 0.00 0.22 1.55 -12.29 -0.02 0.20 16 3 H 0.06 2.67 6.61 -2.38 -0.02 2.66 16 4 C -0.60 -36.20 8.63 25.60 0.22 -35.98 16 5 H 0.01 0.84 7.02 -2.91 -0.02 0.82 16 6 C -0.02 -1.35 5.30 84.66 0.45 -0.90 16 7 N -0.94 -60.85 13.70 21.45 0.29 -60.56 16 8 Si 1.08 47.55 26.27 68.60 1.80 49.35 16 9 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 10 H -0.22 -8.04 5.75 99.48 0.57 -7.47 16 11 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 12 C 0.54 24.61 7.26 87.66 0.64 25.24 16 13 O -0.60 -33.47 15.74 -3.05 -0.05 -33.52 16 14 N -0.63 -19.78 3.31 -807.52 -2.67 -22.45 16 15 C 0.10 2.25 4.84 86.57 0.42 2.67 16 16 C -0.01 -0.12 2.55 -10.76 -0.03 -0.15 16 17 H 0.09 1.61 6.81 -2.39 -0.02 1.60 16 18 C -0.22 -3.19 2.64 -20.15 -0.05 -3.24 16 19 C 0.05 0.77 9.76 85.23 0.83 1.60 16 20 N -0.32 -5.59 12.58 -57.02 -0.72 -6.31 16 21 N -0.37 -4.65 4.01 -369.57 -1.48 -6.14 16 22 C 0.09 0.49 11.47 127.77 1.47 1.95 16 23 C 0.07 0.76 7.70 83.54 0.64 1.40 16 24 C -0.05 -1.01 0.68 -51.75 -0.04 -1.05 16 25 C 0.11 2.85 6.15 86.48 0.53 3.39 16 26 C -0.13 -2.07 4.27 30.53 0.13 -1.94 16 27 C 0.04 0.76 6.21 72.05 0.45 1.20 16 28 O -0.40 -8.50 10.75 -148.98 -1.60 -10.10 16 29 C 0.07 1.22 6.63 72.05 0.48 1.69 16 30 C -0.14 -2.99 4.63 30.53 0.14 -2.84 16 31 H 0.03 1.31 8.13 -2.39 -0.02 1.29 16 32 H 0.08 2.31 5.54 -2.38 -0.01 2.30 16 33 H 0.06 2.34 4.86 -2.39 -0.01 2.33 16 34 H 0.25 16.62 8.73 -92.71 -0.81 15.82 16 35 H 0.09 1.93 6.48 -2.39 -0.02 1.92 16 36 H 0.09 1.59 7.09 -2.38 -0.02 1.57 16 37 H 0.19 2.26 8.06 -2.91 -0.02 2.23 16 38 H 0.08 0.33 8.14 -2.39 -0.02 0.32 16 39 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.19 1.40 7.19 -2.91 -0.02 1.38 16 42 H 0.08 1.83 7.86 -2.38 -0.02 1.81 16 43 H 0.05 1.68 7.60 -2.39 -0.02 1.66 16 44 H 0.10 1.16 4.44 -2.39 -0.01 1.15 16 45 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.09 1.38 3.11 -2.39 -0.01 1.37 16 48 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.06 1.01 6.98 -2.39 -0.02 0.99 16 50 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 51 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -85.39 376.75 3.23 -82.16 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.78 Total: 19.03 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 6.87 Total: -11.48 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -4.58 Total: -95.45 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -1.65 Total: -43.61 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.80 Total: 49.35 kcal Total: -85.39 3.23 -82.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771797528.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.409 kcal (2) G-P(sol) polarization free energy of solvation -85.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds