Wall clock time and date at job start Wed Apr 1 2020 04:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.46948 * 2 1 4 4 C 1.50691 * 109.47273 * 239.99589 * 2 1 3 5 5 H 1.08005 * 120.00097 * 239.99540 * 4 2 1 6 6 C 1.37877 * 120.00071 * 60.00255 * 4 2 1 7 7 N 1.31515 * 119.99867 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99986 * 179.72269 * 6 4 2 9 9 H 1.48495 * 109.47298 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46855 * 120.00101 * 8 6 4 11 11 H 1.48508 * 109.47073 * 239.99775 * 8 6 4 12 12 C 1.50707 * 109.47120 * 119.99470 * 2 1 3 13 13 O 1.21274 * 119.99814 * 119.99994 * 12 2 1 14 14 N 1.34778 * 119.99836 * 300.00486 * 12 2 1 15 15 C 1.48195 * 127.80384 * 0.02562 * 14 12 2 16 16 C 1.54514 * 104.63437 * 219.26093 * 15 14 12 17 17 H 1.08998 * 110.37824 * 217.39535 * 16 15 14 18 18 C 1.50703 * 110.37868 * 95.15559 * 16 15 14 19 19 C 1.39874 * 126.03502 * 315.91145 * 18 16 15 20 20 N 1.30842 * 108.19827 * 179.81869 * 19 18 16 21 21 N 1.40084 * 108.20353 * 0.43768 * 20 19 18 22 22 C 1.46503 * 126.03450 * 179.70303 * 21 20 19 23 23 C 1.34946 * 107.92714 * 359.71787 * 21 20 19 24 24 C 1.53783 * 104.77933 * 336.21892 * 16 15 14 25 25 C 1.48262 * 127.79528 * 179.70334 * 14 12 2 26 26 C 1.52583 * 110.28290 * 241.19521 * 24 16 15 27 27 C 1.53203 * 109.20109 * 182.29568 * 26 24 16 28 28 O 1.42911 * 109.34158 * 56.67274 * 27 26 24 29 29 C 1.42913 * 114.21713 * 298.39397 * 28 27 26 30 30 C 1.52592 * 110.27025 * 119.03651 * 24 16 15 31 31 H 1.09000 * 109.46669 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47008 * 300.00202 * 1 2 3 33 33 H 1.08997 * 109.46823 * 60.00578 * 1 2 3 34 34 H 0.96998 * 120.00283 * 180.02562 * 7 6 4 35 35 H 1.08997 * 110.40168 * 338.04842 * 15 14 12 36 36 H 1.08995 * 110.40477 * 100.46772 * 15 14 12 37 37 H 1.07995 * 125.90185 * 359.97438 * 19 18 16 38 38 H 1.09004 * 109.46562 * 270.02023 * 22 21 20 39 39 H 1.08991 * 109.47424 * 30.02057 * 22 21 20 40 40 H 1.09005 * 109.47389 * 150.02695 * 22 21 20 41 41 H 1.08005 * 126.12508 * 179.97438 * 23 21 20 42 42 H 1.08998 * 110.42533 * 259.63528 * 25 14 12 43 43 H 1.08994 * 110.43204 * 22.12640 * 25 14 12 44 44 H 1.08999 * 109.51972 * 302.22010 * 26 24 16 45 45 H 1.09002 * 109.51592 * 62.38131 * 26 24 16 46 46 H 1.08997 * 109.49288 * 296.71209 * 27 26 24 47 47 H 1.08997 * 109.49175 * 176.62825 * 27 26 24 48 48 H 1.09002 * 109.49462 * 301.65158 * 29 28 27 49 49 H 1.09005 * 109.49055 * 181.57562 * 29 28 27 50 50 H 1.09004 * 109.51597 * 297.64235 * 30 24 16 51 51 H 1.09002 * 109.51694 * 57.80225 * 30 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9437 0.8301 -2.6034 8 14 2.3285 -1.1156 -4.0078 9 1 3.1584 -2.2788 -3.6035 10 1 1.1769 -1.5864 -4.8186 11 1 3.1508 -0.1777 -4.8137 12 6 2.0324 -0.7103 1.2306 13 8 2.7296 -1.6964 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 0.8727 0.9286 2.7896 16 6 1.5766 1.5722 4.0052 17 1 0.8400 1.9591 4.7093 18 6 2.4995 2.6748 3.5541 19 6 3.3814 2.6177 2.4699 20 7 4.0074 3.7640 2.3915 21 7 3.5502 4.5842 3.4310 22 6 3.9972 5.9511 3.7104 23 6 2.6257 3.8928 4.1297 24 6 2.3793 0.4272 4.6453 25 6 2.0965 -0.8115 3.7702 26 6 1.9006 0.1792 6.0727 27 6 2.7534 -0.9251 6.7054 28 8 4.1311 -0.5489 6.6512 29 6 4.6391 -0.3733 5.3270 30 6 3.8694 0.7554 4.6339 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 0.7091 1.1613 -3.4844 35 1 0.8467 1.6260 1.9524 36 1 -0.1368 0.6161 3.0564 37 1 3.5197 1.7742 1.8098 38 1 4.8463 5.9232 4.3935 39 1 4.2955 6.4333 2.7796 40 1 3.1826 6.5138 4.1664 41 1 2.0838 4.2480 4.9939 42 1 1.2798 -1.3985 4.1903 43 1 2.9940 -1.4222 3.6723 44 1 2.0008 1.0953 6.6548 45 1 0.8558 -0.1311 6.0577 46 1 2.6087 -1.8558 6.1568 47 1 2.4552 -1.0647 7.7445 48 1 4.5142 -1.2981 4.7638 49 1 5.6974 -0.1161 5.3746 50 1 4.2132 0.8518 3.6040 51 1 4.0400 1.6921 5.1648 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771797530.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:10 Heat of formation + Delta-G solvation = 6.107157 kcal Electronic energy + Delta-G solvation = -33112.095493 eV Core-core repulsion = 29013.513539 eV Total energy + Delta-G solvation = -4098.581954 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.61689 -40.15285 -38.49874 -36.80265 -33.78106 -33.38623 -32.94065 -31.28123 -31.16242 -30.39053 -28.67055 -26.74953 -26.25119 -25.08295 -24.44709 -23.66365 -22.30451 -21.86577 -20.87662 -19.89190 -18.74158 -18.51464 -16.90434 -16.26659 -16.19399 -15.94615 -15.61282 -15.52803 -15.28430 -14.85684 -14.72580 -14.40756 -14.19418 -13.95379 -13.65831 -13.43068 -13.04184 -12.94408 -12.79563 -12.59592 -12.50143 -12.19242 -12.17442 -11.85576 -11.68779 -11.47097 -11.31641 -11.20264 -10.99866 -10.92498 -10.67795 -10.66001 -10.54499 -10.21321 -10.19771 -10.09717 -9.91573 -9.46829 -9.24310 -8.91247 -8.58252 -8.34269 -8.28298 -7.97839 -5.99276 -4.02132 1.96225 2.58803 2.90595 3.35069 3.42499 3.50100 3.66390 3.73115 3.85035 4.38844 4.49331 4.53316 4.66144 4.70917 4.82454 4.98442 5.00692 5.07750 5.14076 5.19551 5.22903 5.26280 5.34427 5.37874 5.45264 5.49647 5.58871 5.62457 5.64693 5.75184 5.81442 5.86172 5.90768 6.06590 6.08879 6.12085 6.15363 6.26185 6.31128 6.37743 6.67521 6.78334 6.83053 6.92189 7.02343 7.05809 7.16654 7.53143 7.79825 7.82801 8.05180 8.20643 8.46384 9.06850 9.25838 9.63348 11.08211 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010367 B = 0.004111 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.205862 B = 6809.109833 C = 8355.697719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.036 3.964 3 H 0.051 0.949 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.540 3.460 13 O -0.545 6.545 14 N -0.630 5.630 15 C 0.112 3.888 16 C -0.015 4.015 17 H 0.088 0.912 18 C -0.215 4.215 19 C 0.071 3.929 20 N -0.294 5.294 21 N -0.383 5.383 22 C 0.105 3.895 23 C 0.050 3.950 24 C -0.064 4.064 25 C 0.107 3.893 26 C -0.138 4.138 27 C 0.059 3.941 28 O -0.386 6.386 29 C 0.055 3.945 30 C -0.129 4.129 31 H 0.028 0.972 32 H 0.018 0.982 33 H 0.092 0.908 34 H 0.259 0.741 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.180 0.820 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.051 0.949 47 H 0.090 0.910 48 H 0.054 0.946 49 H 0.090 0.910 50 H 0.080 0.920 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.051 8.059 20.724 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.016 3.984 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.332 3.668 13 O -0.420 6.420 14 N -0.366 5.366 15 C -0.012 4.012 16 C -0.035 4.035 17 H 0.106 0.894 18 C -0.227 4.227 19 C -0.116 4.116 20 N -0.115 5.115 21 N -0.165 5.165 22 C -0.037 4.037 23 C -0.096 4.096 24 C -0.065 4.065 25 C -0.016 4.016 26 C -0.176 4.176 27 C -0.018 4.018 28 O -0.304 6.304 29 C -0.021 4.021 30 C -0.167 4.167 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.197 0.803 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.186 0.814 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.070 0.930 47 H 0.108 0.892 48 H 0.072 0.928 49 H 0.108 0.892 50 H 0.098 0.902 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.439 8.469 19.921 21.694 hybrid contribution -0.619 -0.732 -0.619 1.141 sum 0.820 7.736 19.302 20.811 Atomic orbital electron populations 1.21845 0.96622 0.99772 1.01199 1.18814 0.94156 0.96622 0.88849 0.93137 1.21188 1.30859 1.12787 0.88992 0.90802 1.24929 0.95127 0.95040 0.99040 1.69882 1.37212 1.23034 1.23339 0.86435 0.78646 0.79794 0.82615 1.19563 1.21102 1.21075 1.21805 0.78146 0.84001 0.82816 1.90544 1.38537 1.27149 1.85790 1.49315 1.52831 1.29715 1.04759 1.22449 0.93456 0.88172 0.97110 1.20437 0.94858 0.91643 0.96600 0.89425 1.19761 1.05885 0.96002 1.01002 1.23847 0.94489 0.95784 0.97454 1.77464 1.23329 1.02903 1.07767 1.48412 1.31956 1.12975 1.23181 1.21766 1.00690 0.78311 1.02886 1.22176 0.95389 0.93101 0.98906 1.21189 0.95759 0.95250 0.94285 1.22394 1.00450 0.94849 0.83911 1.22173 0.99970 1.00186 0.95223 1.22598 0.81753 0.96288 1.01125 1.87882 1.25202 1.89834 1.27529 1.22751 0.98051 0.97982 0.83337 1.22167 0.93929 0.98688 1.01870 0.95232 0.96291 0.88988 0.93092 0.89203 0.91510 0.80283 0.91150 0.89442 0.89833 0.81433 0.92005 0.90356 0.90900 0.90573 0.93042 0.89165 0.92815 0.89221 0.90196 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.72 37.16 0.32 -2.82 16 2 C 0.04 0.91 1.97 -92.92 -0.18 0.72 16 3 H 0.05 1.31 7.95 -51.92 -0.41 0.90 16 4 C -0.50 -14.25 8.37 -34.44 -0.29 -14.54 16 5 H 0.07 2.24 6.75 -52.48 -0.35 1.88 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.29 11.32 55.43 0.63 -24.67 16 8 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 9 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.54 12.29 7.26 -10.98 -0.08 12.21 16 13 O -0.54 -14.29 15.73 5.56 0.09 -14.20 16 14 N -0.63 -10.90 3.31 -169.17 -0.56 -11.46 16 15 C 0.11 1.58 4.47 -2.31 -0.01 1.57 16 16 C -0.01 -0.17 3.13 -90.57 -0.28 -0.45 16 17 H 0.09 0.78 7.70 -51.93 -0.40 0.38 16 18 C -0.21 -2.70 3.14 -105.05 -0.33 -3.03 16 19 C 0.07 1.12 9.16 -17.36 -0.16 0.96 16 20 N -0.29 -4.71 12.58 30.63 0.39 -4.32 16 21 N -0.38 -4.61 4.01 -68.16 -0.27 -4.88 16 22 C 0.11 0.79 11.47 59.85 0.69 1.48 16 23 C 0.05 0.53 11.34 -17.23 -0.20 0.34 16 24 C -0.06 -0.72 0.69 -153.86 -0.11 -0.83 16 25 C 0.11 1.53 5.12 -2.40 -0.01 1.52 16 26 C -0.14 -1.23 4.60 -26.84 -0.12 -1.36 16 27 C 0.06 0.57 6.65 37.26 0.25 0.82 16 28 O -0.39 -4.69 10.75 -35.23 -0.38 -5.07 16 29 C 0.06 0.67 6.64 37.26 0.25 0.92 16 30 C -0.13 -1.60 3.62 -26.84 -0.10 -1.69 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.02 0.36 5.34 -51.93 -0.28 0.08 16 33 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.09 1.44 6.14 -51.93 -0.32 1.12 16 36 H 0.07 0.84 8.00 -51.93 -0.42 0.43 16 37 H 0.18 3.24 7.87 -52.49 -0.41 2.83 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 42 H 0.06 0.80 7.78 -51.93 -0.40 0.40 16 43 H 0.08 1.25 5.95 -51.93 -0.31 0.94 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.59 8.04 -51.93 -0.42 0.17 16 46 H 0.05 0.50 7.54 -51.93 -0.39 0.11 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.05 0.69 6.53 -51.93 -0.34 0.35 16 49 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.08 1.18 5.85 -51.93 -0.30 0.87 16 51 H 0.07 0.88 7.37 -51.93 -0.38 0.50 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -34.00 388.45 -7.71 -41.71 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.97 Total: 2.62 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -0.46 Total: -2.63 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.18 Total: -45.33 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.29 Total: -19.27 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.00 -7.71 -41.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771797530.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.814 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds