Wall clock time and date at job start Wed Apr 1 2020 04:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.46948 * 2 1 4 4 C 1.50691 * 109.47273 * 239.99589 * 2 1 3 5 5 H 1.08005 * 120.00097 * 239.99540 * 4 2 1 6 6 C 1.37877 * 120.00071 * 60.00255 * 4 2 1 7 7 N 1.31515 * 119.99867 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99986 * 179.72269 * 6 4 2 9 9 H 1.48495 * 109.47298 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46855 * 120.00101 * 8 6 4 11 11 H 1.48508 * 109.47073 * 239.99775 * 8 6 4 12 12 C 1.50707 * 109.47120 * 119.99470 * 2 1 3 13 13 O 1.21274 * 119.99814 * 119.99994 * 12 2 1 14 14 N 1.34778 * 119.99836 * 300.00486 * 12 2 1 15 15 C 1.48195 * 127.80384 * 0.02562 * 14 12 2 16 16 C 1.54514 * 104.63437 * 219.26093 * 15 14 12 17 17 H 1.08998 * 110.37824 * 217.39535 * 16 15 14 18 18 C 1.50703 * 110.37868 * 95.15559 * 16 15 14 19 19 C 1.39874 * 126.03502 * 315.91145 * 18 16 15 20 20 N 1.30842 * 108.19827 * 179.81869 * 19 18 16 21 21 N 1.40084 * 108.20353 * 0.43768 * 20 19 18 22 22 C 1.46503 * 126.03450 * 179.70303 * 21 20 19 23 23 C 1.34946 * 107.92714 * 359.71787 * 21 20 19 24 24 C 1.53783 * 104.77933 * 336.21892 * 16 15 14 25 25 C 1.48262 * 127.79528 * 179.70334 * 14 12 2 26 26 C 1.52583 * 110.28290 * 241.19521 * 24 16 15 27 27 C 1.53203 * 109.20109 * 182.29568 * 26 24 16 28 28 O 1.42911 * 109.34158 * 56.67274 * 27 26 24 29 29 C 1.42913 * 114.21713 * 298.39397 * 28 27 26 30 30 C 1.52592 * 110.27025 * 119.03651 * 24 16 15 31 31 H 1.09000 * 109.46669 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47008 * 300.00202 * 1 2 3 33 33 H 1.08997 * 109.46823 * 60.00578 * 1 2 3 34 34 H 0.96998 * 120.00283 * 180.02562 * 7 6 4 35 35 H 1.08997 * 110.40168 * 338.04842 * 15 14 12 36 36 H 1.08995 * 110.40477 * 100.46772 * 15 14 12 37 37 H 1.07995 * 125.90185 * 359.97438 * 19 18 16 38 38 H 1.09004 * 109.46562 * 270.02023 * 22 21 20 39 39 H 1.08991 * 109.47424 * 30.02057 * 22 21 20 40 40 H 1.09005 * 109.47389 * 150.02695 * 22 21 20 41 41 H 1.08005 * 126.12508 * 179.97438 * 23 21 20 42 42 H 1.08998 * 110.42533 * 259.63528 * 25 14 12 43 43 H 1.08994 * 110.43204 * 22.12640 * 25 14 12 44 44 H 1.08999 * 109.51972 * 302.22010 * 26 24 16 45 45 H 1.09002 * 109.51592 * 62.38131 * 26 24 16 46 46 H 1.08997 * 109.49288 * 296.71209 * 27 26 24 47 47 H 1.08997 * 109.49175 * 176.62825 * 27 26 24 48 48 H 1.09002 * 109.49462 * 301.65158 * 29 28 27 49 49 H 1.09005 * 109.49055 * 181.57562 * 29 28 27 50 50 H 1.09004 * 109.51597 * 297.64235 * 30 24 16 51 51 H 1.09002 * 109.51694 * 57.80225 * 30 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9437 0.8301 -2.6034 8 14 2.3285 -1.1156 -4.0078 9 1 3.1584 -2.2788 -3.6035 10 1 1.1769 -1.5864 -4.8186 11 1 3.1508 -0.1777 -4.8137 12 6 2.0324 -0.7103 1.2306 13 8 2.7296 -1.6964 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 0.8727 0.9286 2.7896 16 6 1.5766 1.5722 4.0052 17 1 0.8400 1.9591 4.7093 18 6 2.4995 2.6748 3.5541 19 6 3.3814 2.6177 2.4699 20 7 4.0074 3.7640 2.3915 21 7 3.5502 4.5842 3.4310 22 6 3.9972 5.9511 3.7104 23 6 2.6257 3.8928 4.1297 24 6 2.3793 0.4272 4.6453 25 6 2.0965 -0.8115 3.7702 26 6 1.9006 0.1792 6.0727 27 6 2.7534 -0.9251 6.7054 28 8 4.1311 -0.5489 6.6512 29 6 4.6391 -0.3733 5.3270 30 6 3.8694 0.7554 4.6339 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 0.7091 1.1613 -3.4844 35 1 0.8467 1.6260 1.9524 36 1 -0.1368 0.6161 3.0564 37 1 3.5197 1.7742 1.8098 38 1 4.8463 5.9232 4.3935 39 1 4.2955 6.4333 2.7796 40 1 3.1826 6.5138 4.1664 41 1 2.0838 4.2480 4.9939 42 1 1.2798 -1.3985 4.1903 43 1 2.9940 -1.4222 3.6723 44 1 2.0008 1.0953 6.6548 45 1 0.8558 -0.1311 6.0577 46 1 2.6087 -1.8558 6.1568 47 1 2.4552 -1.0647 7.7445 48 1 4.5142 -1.2981 4.7638 49 1 5.6974 -0.1161 5.3746 50 1 4.2132 0.8518 3.6040 51 1 4.0400 1.6921 5.1648 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771797530.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:09 Heat of formation + Delta-G solvation = -17.117381 kcal Electronic energy + Delta-G solvation = -33113.102585 eV Core-core repulsion = 29013.513539 eV Total energy + Delta-G solvation = -4099.589045 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.62489 -41.22788 -39.97048 -38.04947 -35.82006 -34.53846 -34.00903 -32.38922 -32.23048 -32.06678 -29.65472 -27.97513 -27.32607 -27.00464 -25.67652 -24.53645 -23.71681 -23.20908 -21.81590 -20.92951 -20.21400 -19.57579 -18.38754 -17.85800 -17.50494 -16.92245 -16.83002 -16.79785 -16.60516 -16.18743 -15.78222 -15.62965 -15.42605 -15.17613 -14.93790 -14.68696 -14.44084 -14.07139 -13.92305 -13.64766 -13.58817 -13.42746 -13.15784 -13.11117 -13.01484 -12.93442 -12.69358 -12.68236 -12.47709 -12.28309 -12.20428 -12.15166 -12.06964 -11.87706 -11.61970 -11.14808 -11.03436 -11.02552 -10.60944 -10.38442 -10.27910 -10.21292 -9.61387 -9.09577 -8.16548 -6.26836 1.04651 1.36109 1.37674 1.51537 1.79154 1.83185 1.94981 2.19603 2.45358 3.00106 3.12621 3.44834 3.56558 3.72108 3.85762 4.09270 4.15284 4.18478 4.21583 4.25335 4.27248 4.34540 4.39943 4.49168 4.56406 4.59375 4.64822 4.71699 4.73417 4.74506 4.82708 4.84636 4.88035 4.91031 4.97665 5.00494 5.02287 5.05771 5.17222 5.20992 5.27503 5.32245 5.37014 5.49145 5.63448 5.69895 5.72732 5.97199 6.22545 6.29037 6.30464 6.71092 6.81187 6.84858 7.39437 7.52257 8.89328 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010367 B = 0.004111 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.205862 B = 6809.109833 C = 8355.697719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.038 3.962 3 H 0.030 0.970 4 C -0.529 4.529 5 H 0.045 0.955 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.953 3.047 9 H -0.280 1.280 10 H -0.270 1.270 11 H -0.276 1.276 12 C 0.539 3.461 13 O -0.595 6.595 14 N -0.623 5.623 15 C 0.103 3.897 16 C -0.001 4.001 17 H 0.136 0.864 18 C -0.229 4.229 19 C 0.050 3.950 20 N -0.345 5.345 21 N -0.380 5.380 22 C 0.095 3.905 23 C 0.073 3.927 24 C -0.053 4.053 25 C 0.104 3.896 26 C -0.128 4.128 27 C 0.049 3.951 28 O -0.396 6.396 29 C 0.059 3.941 30 C -0.119 4.119 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.264 0.736 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.137 0.863 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.221 0.779 42 H 0.086 0.914 43 H 0.052 0.948 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.044 0.956 47 H 0.116 0.884 48 H 0.037 0.963 49 H 0.090 0.910 50 H 0.045 0.955 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.183 10.032 24.358 26.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.017 3.983 3 H 0.047 0.953 4 C -0.567 4.567 5 H 0.063 0.937 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.779 3.221 9 H -0.205 1.205 10 H -0.196 1.196 11 H -0.201 1.201 12 C 0.331 3.669 13 O -0.475 6.475 14 N -0.357 5.357 15 C -0.019 4.019 16 C -0.021 4.021 17 H 0.154 0.846 18 C -0.241 4.241 19 C -0.135 4.135 20 N -0.167 5.167 21 N -0.162 5.162 22 C -0.045 4.045 23 C -0.073 4.073 24 C -0.054 4.054 25 C -0.018 4.018 26 C -0.166 4.166 27 C -0.027 4.027 28 O -0.315 6.315 29 C -0.018 4.018 30 C -0.157 4.157 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.155 0.845 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.140 0.860 41 H 0.238 0.762 42 H 0.104 0.896 43 H 0.070 0.930 44 H 0.112 0.888 45 H 0.121 0.879 46 H 0.062 0.938 47 H 0.134 0.866 48 H 0.055 0.945 49 H 0.109 0.891 50 H 0.064 0.936 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.821 10.486 23.594 25.832 hybrid contribution 0.134 -1.242 -1.679 2.092 sum -0.688 9.244 21.915 23.795 Atomic orbital electron populations 1.21640 0.95031 0.99258 1.01899 1.18637 0.95340 0.95110 0.89252 0.95258 1.21321 1.31494 1.12638 0.91279 0.93656 1.25576 0.95195 0.95719 1.01335 1.69963 1.37293 1.23480 1.24139 0.85579 0.78463 0.78562 0.79511 1.20537 1.19555 1.20104 1.21231 0.78043 0.83400 0.84248 1.90502 1.40845 1.29290 1.86870 1.49087 1.51943 1.30323 1.04311 1.22769 0.94706 0.86608 0.97851 1.20473 0.95093 0.90836 0.95692 0.84626 1.19880 1.06073 0.97628 1.00479 1.23430 0.96423 0.95025 0.98601 1.77355 1.25068 1.03822 1.10477 1.48778 1.31570 1.13918 1.21924 1.22164 1.02855 0.76330 1.03165 1.22898 0.93832 0.91645 0.98956 1.21140 0.94990 0.93594 0.95672 1.22667 1.00195 0.96388 0.82595 1.22172 1.00974 1.00829 0.92580 1.22867 0.80612 0.96402 1.02799 1.87871 1.26951 1.89914 1.26768 1.22640 0.98371 0.97206 0.83603 1.22023 0.94989 0.98861 0.99793 0.96107 0.92406 0.91336 0.92668 0.91541 0.88489 0.84509 0.89644 0.90260 0.85988 0.76219 0.89610 0.92985 0.88820 0.87914 0.93766 0.86580 0.94452 0.89140 0.93625 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.72 71.98 0.63 -5.06 16 2 C 0.04 1.99 1.97 -12.29 -0.02 1.97 16 3 H 0.03 1.66 7.95 -2.38 -0.02 1.64 16 4 C -0.53 -32.06 8.37 25.60 0.21 -31.85 16 5 H 0.05 2.95 6.75 -2.91 -0.02 2.93 16 6 C 0.02 1.21 5.30 84.65 0.45 1.66 16 7 N -0.91 -52.81 11.32 21.45 0.24 -52.57 16 8 Si 0.95 46.70 29.54 68.60 2.03 48.73 16 9 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 C 0.54 26.16 7.26 87.66 0.64 26.80 16 13 O -0.59 -33.69 15.73 -3.01 -0.05 -33.74 16 14 N -0.62 -22.02 3.31 -807.51 -2.67 -24.69 16 15 C 0.10 2.73 4.47 86.57 0.39 3.12 16 16 C 0.00 -0.02 3.13 -10.76 -0.03 -0.05 16 17 H 0.14 1.43 7.70 -2.39 -0.02 1.41 16 18 C -0.23 -5.35 3.14 -20.14 -0.06 -5.41 16 19 C 0.05 1.68 9.16 85.24 0.78 2.46 16 20 N -0.34 -11.44 12.58 -57.02 -0.72 -12.16 16 21 N -0.38 -8.36 4.01 -369.56 -1.48 -9.84 16 22 C 0.09 1.14 11.47 127.77 1.47 2.61 16 23 C 0.07 1.27 11.34 83.54 0.95 2.22 16 24 C -0.05 -1.07 0.69 -51.76 -0.04 -1.10 16 25 C 0.10 2.90 5.12 86.47 0.44 3.34 16 26 C -0.13 -1.65 4.60 30.52 0.14 -1.51 16 27 C 0.05 0.79 6.65 72.05 0.48 1.27 16 28 O -0.40 -8.89 10.75 -148.98 -1.60 -10.49 16 29 C 0.06 1.43 6.64 72.05 0.48 1.91 16 30 C -0.12 -2.91 3.62 30.52 0.11 -2.80 16 31 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 2.21 5.34 -2.39 -0.01 2.19 16 33 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 34 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.07 2.12 6.14 -2.39 -0.01 2.10 16 36 H 0.10 2.05 8.00 -2.39 -0.02 2.03 16 37 H 0.14 5.64 7.87 -2.91 -0.02 5.62 16 38 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.22 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.09 2.02 7.78 -2.39 -0.02 2.00 16 43 H 0.05 1.75 5.95 -2.39 -0.01 1.73 16 44 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.10 0.89 8.04 -2.39 -0.02 0.87 16 46 H 0.04 0.77 7.54 -2.39 -0.02 0.75 16 47 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.04 1.02 6.53 -2.39 -0.02 1.01 16 49 H 0.09 2.12 8.14 -2.38 -0.02 2.11 16 50 H 0.05 1.45 5.85 -2.39 -0.01 1.43 16 51 H 0.08 1.76 7.37 -2.39 -0.02 1.75 16 Total: -1.00 -82.59 388.45 3.68 -78.91 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.93 Total: 16.30 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 7.00 Total: -0.44 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -4.63 Total: -99.26 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -1.65 Total: -44.24 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -82.59 3.68 -78.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771797530.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.792 kcal (2) G-P(sol) polarization free energy of solvation -82.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds