Wall clock time and date at job start Wed Apr 1 2020 05:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47257 * 2 1 4 4 C 1.50708 * 109.47112 * 119.99990 * 2 1 3 5 5 O 1.21278 * 119.99532 * 103.68810 * 4 2 1 6 6 N 1.34772 * 119.99857 * 283.95979 * 4 2 1 7 7 C 1.46502 * 120.00080 * 359.73153 * 6 4 2 8 8 C 1.46496 * 119.99815 * 179.72082 * 6 4 2 9 9 C 1.50706 * 109.46730 * 90.00865 * 8 6 4 10 10 H 1.07994 * 119.99873 * 359.97438 * 9 8 6 11 11 C 1.37874 * 119.99650 * 180.02562 * 9 8 6 12 12 N 1.31518 * 120.00419 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99733 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47352 * 89.99557 * 13 11 9 15 15 H 1.48508 * 109.47010 * 209.99381 * 13 11 9 16 16 H 1.48500 * 109.47003 * 329.99245 * 13 11 9 17 17 N 1.46904 * 109.47208 * 240.00052 * 2 1 3 18 18 C 1.46957 * 111.00140 * 76.10090 * 17 2 1 19 19 C 1.53045 * 109.36470 * 176.81122 * 18 17 2 20 20 N 1.46959 * 109.36630 * 58.39943 * 19 18 17 21 21 C 1.39936 * 111.00628 * 176.81031 * 20 19 18 22 22 C 1.38855 * 120.01860 * 123.52739 * 21 20 19 23 23 C 1.38115 * 119.97623 * 179.72431 * 22 21 20 24 24 C 1.38704 * 120.01812 * 0.57627 * 23 22 21 25 25 O 1.36005 * 119.97651 * 179.70160 * 24 23 22 26 26 C 1.38697 * 120.03915 * 359.67678 * 24 23 22 27 27 C 1.38109 * 120.02034 * 0.04653 * 26 24 23 28 28 C 1.46957 * 110.88081 * 300.68115 * 20 19 18 29 29 C 1.46953 * 110.99819 * 312.29881 * 17 2 1 30 30 H 1.09002 * 109.46623 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46917 * 300.00070 * 1 2 3 32 32 H 1.08997 * 109.47070 * 60.00172 * 1 2 3 33 33 H 1.08997 * 109.47523 * 89.99068 * 7 6 4 34 34 H 1.08996 * 109.47049 * 210.00148 * 7 6 4 35 35 H 1.09000 * 109.46641 * 329.99150 * 7 6 4 36 36 H 1.09001 * 109.47097 * 210.00037 * 8 6 4 37 37 H 1.08994 * 109.47633 * 330.00849 * 8 6 4 38 38 H 0.96998 * 119.99764 * 179.97438 * 12 11 9 39 39 H 1.09001 * 109.48510 * 296.78194 * 18 17 2 40 40 H 1.09000 * 109.48743 * 56.84675 * 18 17 2 41 41 H 1.08995 * 109.49205 * 298.43793 * 19 18 17 42 42 H 1.08999 * 109.48916 * 178.37012 * 19 18 17 43 43 H 1.07994 * 120.01209 * 359.97438 * 22 21 20 44 44 H 1.07998 * 119.99134 * 180.27642 * 23 22 21 45 45 H 0.96701 * 113.99754 * 269.97369 * 25 24 23 46 46 H 1.07998 * 119.98849 * 180.02562 * 26 24 23 47 47 H 1.07999 * 120.00648 * 180.02562 * 27 26 24 48 48 H 1.08996 * 109.49103 * 299.35060 * 28 20 19 49 49 H 1.09000 * 109.48743 * 179.28237 * 28 20 19 50 50 H 1.08999 * 109.49252 * 303.15852 * 29 17 2 51 51 H 1.09007 * 109.48905 * 63.22631 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.4688 -1.8386 1.1436 6 7 1.9915 -0.0941 2.4283 7 6 1.4642 1.2687 2.5333 8 6 2.4742 -0.7869 3.6255 9 6 3.9424 -0.5032 3.8123 10 1 4.4638 0.1295 3.1094 11 6 4.6202 -1.0524 4.8800 12 7 3.9853 -1.8233 5.7358 13 14 6.4403 -0.7013 5.1113 14 1 6.6077 0.5133 5.9491 15 1 7.0862 -1.8582 5.7820 16 1 7.0739 -0.4801 3.7866 17 7 2.0197 -0.6925 -1.1995 18 6 1.8846 0.1577 -2.3905 19 6 2.4771 -0.5672 -3.6012 20 7 1.7821 -1.8481 -3.7905 21 6 2.2485 -2.5079 -4.9330 22 6 2.7576 -3.7958 -4.8323 23 6 3.2124 -4.4483 -5.9615 24 6 3.1718 -3.8129 -7.1937 25 8 3.6255 -4.4540 -8.3041 26 6 2.6683 -2.5245 -7.2943 27 6 2.2078 -1.8727 -6.1672 28 6 1.9172 -2.6983 -2.5994 29 6 1.3247 -1.9734 -1.3886 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.3912 1.2298 2.7210 34 1 1.9583 1.7872 3.3549 35 1 1.6509 1.8032 1.6018 36 1 1.9223 -0.4342 4.4967 37 1 2.3233 -1.8602 3.5098 38 1 4.4623 -2.2099 6.4867 39 1 0.8299 0.3654 -2.5712 40 1 2.4180 1.0947 -2.2308 41 1 3.5380 -0.7507 -3.4319 42 1 2.3519 0.0494 -4.4913 43 1 2.7941 -4.2887 -3.8721 44 1 3.6043 -5.4517 -5.8841 45 1 4.5651 -4.3124 -8.4836 46 1 2.6367 -2.0307 -8.2543 47 1 1.8154 -0.8696 -6.2458 48 1 2.9718 -2.9060 -2.4186 49 1 1.3838 -3.6354 -2.7591 50 1 1.4499 -2.5900 -0.4985 51 1 0.2637 -1.7899 -1.5581 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052635414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:57 Heat of formation + Delta-G solvation = -15.231468 kcal Electronic energy + Delta-G solvation = -31019.699755 eV Core-core repulsion = 26920.192489 eV Total energy + Delta-G solvation = -4099.507266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.75506 -39.71395 -38.57644 -37.00721 -35.10503 -34.74651 -32.66369 -31.85353 -31.16163 -30.58580 -28.58914 -27.66655 -26.15080 -25.69473 -24.51935 -23.99147 -22.31871 -22.18831 -21.53539 -19.67435 -18.64685 -18.36958 -17.41157 -16.68770 -16.40921 -16.01120 -15.91485 -15.64194 -15.07311 -14.92187 -14.66929 -14.53096 -14.47992 -14.16637 -14.01786 -13.88212 -13.69220 -13.24035 -12.78067 -12.74031 -12.33509 -12.27567 -12.19519 -12.10790 -12.07562 -11.93250 -11.65910 -11.50435 -11.20552 -11.09626 -11.05404 -10.88076 -10.78033 -10.60751 -10.55030 -10.14198 -9.73976 -9.60825 -9.24653 -8.85437 -8.43114 -8.11862 -7.93513 -7.62000 -6.03813 -4.08195 1.01584 1.10431 3.24274 3.30169 3.35910 3.37935 3.44283 3.66009 3.67959 4.02067 4.17177 4.46008 4.55559 4.67843 4.70909 4.88672 4.99587 5.05448 5.08976 5.13910 5.15638 5.20144 5.29184 5.30832 5.33853 5.38857 5.47162 5.51742 5.61576 5.69030 5.73046 5.75362 5.77801 5.85932 5.92295 5.93838 6.02595 6.09531 6.16906 6.21570 6.24214 6.39049 6.77791 6.89283 7.02653 7.11851 7.16467 7.42607 7.44519 7.55580 7.93041 8.24188 8.43311 8.91868 9.13289 9.56959 11.04218 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.002313 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.409379 B =12100.253694 C =13233.190029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 H 0.099 0.901 4 C 0.515 3.485 5 O -0.527 6.527 6 N -0.602 5.602 7 C 0.083 3.917 8 C 0.247 3.753 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.516 5.516 18 C 0.054 3.946 19 C 0.063 3.937 20 N -0.491 5.491 21 C 0.111 3.889 22 C -0.154 4.154 23 C -0.116 4.116 24 C 0.069 3.931 25 O -0.501 6.501 26 C -0.120 4.120 27 C -0.127 4.127 28 C 0.054 3.946 29 C 0.050 3.950 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.044 0.956 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.134 0.866 44 H 0.128 0.872 45 H 0.385 0.615 46 H 0.128 0.872 47 H 0.128 0.872 48 H 0.059 0.941 49 H 0.084 0.916 50 H 0.110 0.890 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 3.671 -23.063 24.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.048 4.048 3 H 0.117 0.883 4 C 0.300 3.700 5 O -0.403 6.403 6 N -0.335 5.335 7 C -0.062 4.062 8 C 0.128 3.872 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.240 5.240 18 C -0.075 4.075 19 C -0.063 4.063 20 N -0.206 5.206 21 C 0.013 3.987 22 C -0.175 4.175 23 C -0.135 4.135 24 C 0.024 3.976 25 O -0.310 6.310 26 C -0.139 4.139 27 C -0.147 4.147 28 C -0.073 4.073 29 C -0.078 4.078 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.152 0.848 44 H 0.146 0.854 45 H 0.240 0.760 46 H 0.146 0.854 47 H 0.146 0.854 48 H 0.077 0.923 49 H 0.103 0.897 50 H 0.128 0.872 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.412 2.814 -22.868 23.916 hybrid contribution 1.359 0.458 0.249 1.455 sum -5.053 3.273 -22.619 23.407 Atomic orbital electron populations 1.22363 0.95493 1.03232 1.02746 1.21683 0.94100 0.98605 0.90437 0.88286 1.20009 0.79315 0.86852 0.83812 1.90599 1.45863 1.18907 1.84963 1.48126 1.61354 1.14921 1.09105 1.21685 0.97851 0.84497 1.02126 1.19267 0.94185 0.93641 0.80125 1.21430 0.94567 1.30333 1.09913 0.92487 1.24937 0.98513 0.94936 0.95781 1.69933 1.36448 1.32543 1.14566 0.86504 0.85016 0.77720 0.78230 1.20687 1.21111 1.19874 1.61998 1.56842 1.03897 1.01286 1.22223 0.99784 0.96108 0.89338 1.22286 0.96827 0.89009 0.98156 1.59411 1.53111 1.05570 1.02518 1.19056 0.94561 0.93674 0.91436 1.21315 1.01053 0.95814 0.99275 1.21301 1.00389 1.00306 0.91513 1.18376 1.01800 0.91386 0.85991 1.84878 1.30202 1.72645 1.43307 1.21250 1.00063 0.93860 0.98755 1.20655 1.02725 1.00688 0.90654 1.22398 1.01246 0.95732 0.87884 1.22455 0.95337 0.91299 0.98704 0.91514 0.91152 0.91975 0.93767 0.90780 0.92556 0.95100 0.93888 0.92755 0.93752 0.89908 0.92712 0.89803 0.84815 0.85439 0.75990 0.85434 0.85385 0.92295 0.89734 0.87178 0.94042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 8.19 37.16 0.30 -1.83 16 2 C 0.06 0.93 1.93 -68.86 -0.13 0.79 16 3 H 0.10 1.29 6.28 -51.93 -0.33 0.97 16 4 C 0.51 10.39 6.85 -10.98 -0.08 10.31 16 5 O -0.53 -12.81 13.84 5.56 0.08 -12.74 16 6 N -0.60 -12.47 2.86 -182.96 -0.52 -13.00 16 7 C 0.08 1.26 9.36 59.85 0.56 1.82 16 8 C 0.25 6.40 5.16 -5.19 -0.03 6.37 16 9 C -0.52 -14.82 9.39 -34.44 -0.32 -15.14 16 10 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 13 Si 0.90 21.93 29.54 -169.99 -5.02 16.90 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 17 N -0.52 -7.37 4.42 -227.87 -1.01 -8.38 16 18 C 0.05 0.59 5.40 -3.77 -0.02 0.57 16 19 C 0.06 0.65 5.38 -3.77 -0.02 0.63 16 20 N -0.49 -5.57 4.76 -170.91 -0.81 -6.38 16 21 C 0.11 1.22 5.64 -83.70 -0.47 0.74 16 22 C -0.15 -1.65 8.82 -39.40 -0.35 -2.00 16 23 C -0.12 -1.16 9.98 -39.45 -0.39 -1.56 16 24 C 0.07 0.68 6.70 -39.24 -0.26 0.42 16 25 O -0.50 -4.36 13.51 -19.76 -0.27 -4.63 16 26 C -0.12 -1.11 9.98 -39.46 -0.39 -1.50 16 27 C -0.13 -1.22 9.19 -39.40 -0.36 -1.58 16 28 C 0.05 0.67 4.29 -3.76 -0.02 0.66 16 29 C 0.05 0.70 4.43 -3.77 -0.02 0.68 16 30 H 0.07 0.86 6.39 -51.93 -0.33 0.53 16 31 H 0.07 0.79 6.46 -51.93 -0.34 0.46 16 32 H 0.06 0.62 7.02 -51.93 -0.36 0.25 16 33 H 0.04 0.57 7.43 -51.93 -0.39 0.19 16 34 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 35 H 0.06 0.70 6.03 -51.93 -0.31 0.39 16 36 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 37 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.04 0.46 7.02 -51.93 -0.36 0.09 16 40 H 0.08 0.80 8.02 -51.93 -0.42 0.39 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.70 6.82 -51.93 -0.35 0.35 16 43 H 0.13 1.37 5.81 -52.49 -0.30 1.07 16 44 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.39 1.53 9.06 45.56 0.41 1.94 16 46 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 47 H 0.13 1.04 7.18 -52.49 -0.38 0.66 16 48 H 0.06 0.81 7.57 -51.93 -0.39 0.41 16 49 H 0.08 0.96 7.18 -51.93 -0.37 0.58 16 50 H 0.11 1.88 5.88 -51.93 -0.31 1.57 16 51 H 0.04 0.54 6.41 -51.92 -0.33 0.21 16 LS Contribution 394.19 15.07 5.94 5.94 Total: -1.00 -34.57 394.19 -9.88 -44.45 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.90 Total: 2.68 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -2.10 Total: 1.01 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -1.61 Total: -53.62 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.19 Total: -17.37 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.57 -9.88 -44.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052635414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.216 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds