Wall clock time and date at job start Wed Apr 1 2020 05:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47257 * 2 1 4 4 C 1.50708 * 109.47112 * 119.99990 * 2 1 3 5 5 O 1.21278 * 119.99532 * 103.68810 * 4 2 1 6 6 N 1.34772 * 119.99857 * 283.95979 * 4 2 1 7 7 C 1.46502 * 120.00080 * 359.73153 * 6 4 2 8 8 C 1.46496 * 119.99815 * 179.72082 * 6 4 2 9 9 C 1.50706 * 109.46730 * 90.00865 * 8 6 4 10 10 H 1.07994 * 119.99873 * 359.97438 * 9 8 6 11 11 C 1.37874 * 119.99650 * 180.02562 * 9 8 6 12 12 N 1.31518 * 120.00419 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99733 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47352 * 89.99557 * 13 11 9 15 15 H 1.48508 * 109.47010 * 209.99381 * 13 11 9 16 16 H 1.48500 * 109.47003 * 329.99245 * 13 11 9 17 17 N 1.46904 * 109.47208 * 240.00052 * 2 1 3 18 18 C 1.46957 * 111.00140 * 76.10090 * 17 2 1 19 19 C 1.53045 * 109.36470 * 176.81122 * 18 17 2 20 20 N 1.46959 * 109.36630 * 58.39943 * 19 18 17 21 21 C 1.39936 * 111.00628 * 176.81031 * 20 19 18 22 22 C 1.38855 * 120.01860 * 123.52739 * 21 20 19 23 23 C 1.38115 * 119.97623 * 179.72431 * 22 21 20 24 24 C 1.38704 * 120.01812 * 0.57627 * 23 22 21 25 25 O 1.36005 * 119.97651 * 179.70160 * 24 23 22 26 26 C 1.38697 * 120.03915 * 359.67678 * 24 23 22 27 27 C 1.38109 * 120.02034 * 0.04653 * 26 24 23 28 28 C 1.46957 * 110.88081 * 300.68115 * 20 19 18 29 29 C 1.46953 * 110.99819 * 312.29881 * 17 2 1 30 30 H 1.09002 * 109.46623 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46917 * 300.00070 * 1 2 3 32 32 H 1.08997 * 109.47070 * 60.00172 * 1 2 3 33 33 H 1.08997 * 109.47523 * 89.99068 * 7 6 4 34 34 H 1.08996 * 109.47049 * 210.00148 * 7 6 4 35 35 H 1.09000 * 109.46641 * 329.99150 * 7 6 4 36 36 H 1.09001 * 109.47097 * 210.00037 * 8 6 4 37 37 H 1.08994 * 109.47633 * 330.00849 * 8 6 4 38 38 H 0.96998 * 119.99764 * 179.97438 * 12 11 9 39 39 H 1.09001 * 109.48510 * 296.78194 * 18 17 2 40 40 H 1.09000 * 109.48743 * 56.84675 * 18 17 2 41 41 H 1.08995 * 109.49205 * 298.43793 * 19 18 17 42 42 H 1.08999 * 109.48916 * 178.37012 * 19 18 17 43 43 H 1.07994 * 120.01209 * 359.97438 * 22 21 20 44 44 H 1.07998 * 119.99134 * 180.27642 * 23 22 21 45 45 H 0.96701 * 113.99754 * 269.97369 * 25 24 23 46 46 H 1.07998 * 119.98849 * 180.02562 * 26 24 23 47 47 H 1.07999 * 120.00648 * 180.02562 * 27 26 24 48 48 H 1.08996 * 109.49103 * 299.35060 * 28 20 19 49 49 H 1.09000 * 109.48743 * 179.28237 * 28 20 19 50 50 H 1.08999 * 109.49252 * 303.15852 * 29 17 2 51 51 H 1.09007 * 109.48905 * 63.22631 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.4688 -1.8386 1.1436 6 7 1.9915 -0.0941 2.4283 7 6 1.4642 1.2687 2.5333 8 6 2.4742 -0.7869 3.6255 9 6 3.9424 -0.5032 3.8123 10 1 4.4638 0.1295 3.1094 11 6 4.6202 -1.0524 4.8800 12 7 3.9853 -1.8233 5.7358 13 14 6.4403 -0.7013 5.1113 14 1 6.6077 0.5133 5.9491 15 1 7.0862 -1.8582 5.7820 16 1 7.0739 -0.4801 3.7866 17 7 2.0197 -0.6925 -1.1995 18 6 1.8846 0.1577 -2.3905 19 6 2.4771 -0.5672 -3.6012 20 7 1.7821 -1.8481 -3.7905 21 6 2.2485 -2.5079 -4.9330 22 6 2.7576 -3.7958 -4.8323 23 6 3.2124 -4.4483 -5.9615 24 6 3.1718 -3.8129 -7.1937 25 8 3.6255 -4.4540 -8.3041 26 6 2.6683 -2.5245 -7.2943 27 6 2.2078 -1.8727 -6.1672 28 6 1.9172 -2.6983 -2.5994 29 6 1.3247 -1.9734 -1.3886 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.3912 1.2298 2.7210 34 1 1.9583 1.7872 3.3549 35 1 1.6509 1.8032 1.6018 36 1 1.9223 -0.4342 4.4967 37 1 2.3233 -1.8602 3.5098 38 1 4.4623 -2.2099 6.4867 39 1 0.8299 0.3654 -2.5712 40 1 2.4180 1.0947 -2.2308 41 1 3.5380 -0.7507 -3.4319 42 1 2.3519 0.0494 -4.4913 43 1 2.7941 -4.2887 -3.8721 44 1 3.6043 -5.4517 -5.8841 45 1 4.5651 -4.3124 -8.4836 46 1 2.6367 -2.0307 -8.2543 47 1 1.8154 -0.8696 -6.2458 48 1 2.9718 -2.9060 -2.4186 49 1 1.3838 -3.6354 -2.7591 50 1 1.4499 -2.5900 -0.4985 51 1 0.2637 -1.7899 -1.5581 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052635414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:56 Heat of formation + Delta-G solvation = -41.649018 kcal Electronic energy + Delta-G solvation = -31020.845306 eV Core-core repulsion = 26920.192489 eV Total energy + Delta-G solvation = -4100.652817 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.69306 -40.88091 -39.60492 -37.97215 -36.52692 -35.96230 -34.72188 -32.68719 -32.24974 -31.45803 -29.85126 -29.13739 -27.43559 -26.82779 -25.66263 -25.36542 -23.69433 -23.01077 -22.50311 -20.69198 -19.80703 -19.34086 -18.69102 -18.28530 -17.90214 -17.29855 -16.83989 -16.59715 -16.39150 -16.20161 -15.85787 -15.75013 -15.49194 -15.22066 -15.16849 -14.95901 -14.57944 -14.40083 -14.26518 -13.85726 -13.58164 -13.45966 -13.31782 -13.24026 -13.13564 -12.95588 -12.90302 -12.85233 -12.74258 -12.62318 -12.44868 -12.20716 -12.07398 -11.99082 -11.79356 -11.67670 -11.33471 -10.64028 -10.57764 -10.36072 -9.98751 -9.39621 -9.17228 -8.75098 -8.22061 -6.36571 0.26645 0.36189 1.35310 1.38565 1.48851 1.89081 2.27098 2.40482 2.49294 2.83876 2.97926 3.07150 3.37550 3.66670 3.75790 3.83785 3.99213 4.00922 4.07442 4.09537 4.21233 4.27652 4.34809 4.37801 4.45871 4.50676 4.55507 4.63671 4.68123 4.73062 4.78972 4.79825 4.89259 4.92023 4.95578 5.02579 5.03600 5.05602 5.18782 5.20341 5.24243 5.25553 5.47984 5.57749 5.66199 5.85504 5.90762 5.96979 6.07558 6.15439 6.23259 6.71793 6.85246 6.89570 7.29912 7.56896 8.84631 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.002313 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.409379 B =12100.253694 C =13233.190029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.078 3.922 3 H 0.124 0.876 4 C 0.502 3.498 5 O -0.582 6.582 6 N -0.611 5.611 7 C 0.077 3.923 8 C 0.262 3.738 9 C -0.538 4.538 10 H 0.051 0.949 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.262 1.262 15 H -0.282 1.282 16 H -0.274 1.274 17 N -0.541 5.541 18 C 0.056 3.944 19 C 0.062 3.938 20 N -0.487 5.487 21 C 0.092 3.908 22 C -0.167 4.167 23 C -0.128 4.128 24 C 0.068 3.932 25 O -0.511 6.511 26 C -0.121 4.121 27 C -0.123 4.123 28 C 0.063 3.937 29 C 0.058 3.942 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.022 0.978 37 H -0.004 1.004 38 H 0.267 0.733 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.036 0.964 42 H 0.113 0.887 43 H 0.127 0.873 44 H 0.135 0.865 45 H 0.406 0.594 46 H 0.150 0.850 47 H 0.148 0.852 48 H 0.036 0.964 49 H 0.089 0.911 50 H 0.070 0.930 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 6.467 -25.570 27.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.034 4.034 3 H 0.142 0.858 4 C 0.290 3.710 5 O -0.462 6.462 6 N -0.343 5.343 7 C -0.065 4.065 8 C 0.140 3.860 9 C -0.577 4.577 10 H 0.069 0.931 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.187 1.187 15 H -0.207 1.207 16 H -0.199 1.199 17 N -0.266 5.266 18 C -0.071 4.071 19 C -0.063 4.063 20 N -0.203 5.203 21 C -0.005 4.005 22 C -0.188 4.188 23 C -0.147 4.147 24 C 0.023 3.977 25 O -0.323 6.323 26 C -0.140 4.140 27 C -0.143 4.143 28 C -0.064 4.064 29 C -0.070 4.070 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.040 0.960 37 H 0.014 0.986 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.119 0.881 41 H 0.054 0.946 42 H 0.131 0.869 43 H 0.145 0.855 44 H 0.153 0.847 45 H 0.264 0.736 46 H 0.167 0.833 47 H 0.166 0.834 48 H 0.054 0.946 49 H 0.107 0.893 50 H 0.088 0.912 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.635 5.661 -25.404 26.860 hybrid contribution 1.435 -0.476 0.957 1.790 sum -5.200 5.184 -24.448 25.527 Atomic orbital electron populations 1.22317 0.93035 1.02857 1.04739 1.21585 0.95746 0.98408 0.87613 0.85804 1.21187 0.78179 0.86494 0.85121 1.90578 1.48149 1.21507 1.85920 1.48150 1.61391 1.16872 1.07877 1.21985 0.99117 0.81548 1.03824 1.18698 0.93510 0.91546 0.82211 1.21688 0.95793 1.30341 1.09890 0.93080 1.25858 1.03366 0.94595 0.95455 1.70052 1.38380 1.33355 1.15107 0.85430 0.79029 0.78227 0.78205 1.18681 1.20703 1.19930 1.61906 1.57588 1.04525 1.02556 1.22332 1.01082 0.96017 0.87666 1.22379 0.95647 0.88973 0.99282 1.59480 1.53320 1.05608 1.01852 1.19207 0.95580 0.93881 0.91865 1.21373 1.01775 0.96255 0.99397 1.21440 1.00717 1.00842 0.91686 1.18515 1.01506 0.91674 0.85999 1.84818 1.32124 1.72688 1.42689 1.21504 0.99318 0.93615 0.99599 1.20868 1.02043 1.01425 0.89974 1.22214 0.99741 0.96175 0.88283 1.22222 0.96082 0.91157 0.97491 0.93144 0.90156 0.88844 0.91016 0.91670 0.88889 0.95953 0.98627 0.92460 0.92122 0.88099 0.94563 0.86926 0.85511 0.84743 0.73566 0.83275 0.83416 0.94557 0.89314 0.91186 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.61 8.19 71.98 0.59 -3.02 16 2 C 0.08 2.15 1.93 44.17 0.09 2.23 16 3 H 0.12 2.78 6.28 -2.39 -0.02 2.77 16 4 C 0.50 20.72 6.85 87.66 0.60 21.32 16 5 O -0.58 -30.14 13.84 -3.02 -0.04 -30.18 16 6 N -0.61 -25.69 2.86 -851.14 -2.43 -28.12 16 7 C 0.08 2.22 9.36 127.77 1.20 3.41 16 8 C 0.26 14.24 5.16 85.64 0.44 14.68 16 9 C -0.54 -31.40 9.39 25.60 0.24 -31.16 16 10 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 11 C 0.01 0.35 5.46 84.65 0.46 0.81 16 12 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 13 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 14 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 16 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 17 N -0.54 -14.97 4.42 -874.85 -3.87 -18.84 16 18 C 0.06 1.06 5.40 86.31 0.47 1.53 16 19 C 0.06 1.17 5.38 86.31 0.46 1.64 16 20 N -0.49 -10.52 4.76 -694.63 -3.31 -13.82 16 21 C 0.09 1.93 5.64 38.14 0.22 2.15 16 22 C -0.17 -3.65 8.82 22.39 0.20 -3.45 16 23 C -0.13 -2.53 9.98 22.35 0.22 -2.30 16 24 C 0.07 1.24 6.70 22.49 0.15 1.39 16 25 O -0.51 -7.96 13.51 -93.61 -1.26 -9.22 16 26 C -0.12 -1.94 9.98 22.35 0.22 -1.72 16 27 C -0.12 -2.08 9.19 22.39 0.21 -1.87 16 28 C 0.06 1.63 4.29 86.31 0.37 2.00 16 29 C 0.06 1.68 4.43 86.31 0.38 2.06 16 30 H 0.05 1.25 6.39 -2.39 -0.02 1.23 16 31 H 0.08 1.54 6.46 -2.39 -0.02 1.53 16 32 H 0.09 1.44 7.02 -2.39 -0.02 1.42 16 33 H 0.07 1.68 7.43 -2.39 -0.02 1.66 16 34 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 35 H 0.09 1.97 6.03 -2.39 -0.01 1.96 16 36 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 37 H 0.00 -0.28 7.42 -2.39 -0.02 -0.29 16 38 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.06 0.98 7.02 -2.39 -0.02 0.96 16 40 H 0.10 1.55 8.02 -2.39 -0.02 1.53 16 41 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.11 1.47 6.82 -2.39 -0.02 1.45 16 43 H 0.13 2.82 5.81 -2.91 -0.02 2.80 16 44 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 45 H 0.41 2.42 9.06 -74.06 -0.67 1.75 16 46 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 47 H 0.15 1.85 7.18 -2.91 -0.02 1.83 16 48 H 0.04 1.08 7.57 -2.39 -0.02 1.06 16 49 H 0.09 2.14 7.18 -2.39 -0.02 2.12 16 50 H 0.07 2.59 5.88 -2.39 -0.01 2.58 16 51 H 0.05 1.37 6.41 -2.38 -0.02 1.35 16 Total: -1.00 -79.77 394.19 -1.80 -81.57 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.28 Total: 17.90 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 6.51 Total: 9.69 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -9.32 Total: -117.29 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -1.31 Total: -39.40 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -79.77 -1.80 -81.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052635414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.923 kcal (2) G-P(sol) polarization free energy of solvation -79.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds