Wall clock time and date at job start Wed Apr 1 2020 05:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47057 * 2 1 4 4 C 1.50707 * 109.46859 * 119.99487 * 2 1 3 5 5 O 1.21280 * 119.99763 * 93.67136 * 4 2 1 6 6 N 1.34770 * 120.00029 * 273.66375 * 4 2 1 7 7 C 1.46504 * 120.00295 * 0.02562 * 6 4 2 8 8 C 1.46498 * 120.00222 * 180.02562 * 6 4 2 9 9 C 1.50701 * 109.46940 * 90.00072 * 8 6 4 10 10 H 1.07994 * 120.00105 * 0.02562 * 9 8 6 11 11 C 1.37877 * 119.99713 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00271 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99809 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47185 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47124 * 120.00564 * 13 11 9 16 16 H 1.48506 * 109.47138 * 240.00214 * 13 11 9 17 17 N 1.46895 * 109.47238 * 239.99638 * 2 1 3 18 18 C 1.46957 * 111.00181 * 186.78642 * 17 2 1 19 19 C 1.53058 * 109.36500 * 183.18971 * 18 17 2 20 20 N 1.46957 * 109.36007 * 301.59483 * 19 18 17 21 21 C 1.39961 * 110.99772 * 183.18978 * 20 19 18 22 22 C 1.38722 * 120.09070 * 300.02078 * 21 20 19 23 23 C 1.38228 * 119.98394 * 179.97438 * 22 21 20 24 24 C 1.38255 * 120.15555 * 359.97438 * 23 22 21 25 25 C 1.38283 * 120.18127 * 0.02562 * 24 23 22 26 26 C 1.38501 * 120.02110 * 359.97438 * 25 24 23 27 27 O 1.36014 * 120.08323 * 179.97438 * 26 25 24 28 28 C 1.46951 * 110.88362 * 59.32091 * 20 19 18 29 29 C 1.46966 * 110.99798 * 310.58184 * 17 2 1 30 30 H 1.09000 * 109.46831 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47028 * 300.00724 * 1 2 3 32 32 H 1.09000 * 109.46929 * 60.00213 * 1 2 3 33 33 H 1.09001 * 109.46981 * 89.99519 * 7 6 4 34 34 H 1.08996 * 109.47241 * 209.99439 * 7 6 4 35 35 H 1.09002 * 109.46706 * 329.99766 * 7 6 4 36 36 H 1.08997 * 109.47689 * 210.00553 * 8 6 4 37 37 H 1.09007 * 109.46883 * 330.00535 * 8 6 4 38 38 H 0.97005 * 119.99964 * 180.02562 * 12 11 9 39 39 H 1.08999 * 109.49299 * 63.21452 * 18 17 2 40 40 H 1.09002 * 109.50357 * 303.16214 * 18 17 2 41 41 H 1.08997 * 109.48488 * 181.63073 * 19 18 17 42 42 H 1.08999 * 109.50741 * 61.56957 * 19 18 17 43 43 H 1.08002 * 120.01157 * 359.96160 * 22 21 20 44 44 H 1.08001 * 119.92137 * 180.02562 * 23 22 21 45 45 H 1.08004 * 119.90616 * 180.27793 * 24 23 22 46 46 H 1.08005 * 119.98635 * 179.97438 * 25 24 23 47 47 H 0.96703 * 113.99152 * 90.00163 * 27 26 25 48 48 H 1.09002 * 109.48893 * 60.64336 * 28 20 19 49 49 H 1.08992 * 109.49524 * 180.70717 * 28 20 19 50 50 H 1.09001 * 109.48809 * 296.77760 * 29 17 2 51 51 H 1.09001 * 109.48518 * 56.82244 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.2978 -1.8927 1.1823 6 7 2.1866 -0.0316 2.3847 7 6 1.8655 1.3966 2.4431 8 6 2.6754 -0.7220 3.5808 9 6 4.1796 -0.6432 3.6267 10 1 4.7177 -0.1299 2.8435 11 6 4.8689 -1.2256 4.6692 12 7 4.2137 -1.8502 5.6232 13 14 6.7335 -1.1274 4.7265 14 1 7.2262 -0.3766 3.5439 15 1 7.1544 -0.4291 5.9676 16 1 7.3021 -2.4992 4.7133 17 7 2.0197 -0.6925 -1.1993 18 6 3.4797 -0.8542 -1.1550 19 6 3.9578 -1.5065 -2.4544 20 7 3.2918 -2.8059 -2.6210 21 6 3.7583 -3.4658 -3.7637 22 6 3.6144 -2.8797 -5.0128 23 6 4.0764 -3.5331 -6.1398 24 6 4.6828 -4.7703 -6.0257 25 6 4.8298 -5.3606 -4.7839 26 6 4.3696 -4.7125 -3.6497 27 8 4.5130 -5.2922 -2.4277 28 6 1.8319 -2.6444 -2.6652 29 6 1.3537 -1.9920 -1.3659 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.8191 1.5226 2.7210 34 1 2.4994 1.8814 3.1855 35 1 2.0391 1.8482 1.4664 36 1 2.2594 -0.2477 4.4696 37 1 2.3671 -1.7670 3.5486 38 1 4.6986 -2.2597 6.3568 39 1 3.7501 -1.4867 -0.3095 40 1 3.9507 0.1225 -1.0437 41 1 5.0369 -1.6538 -2.4117 42 1 3.7118 -0.8611 -3.2977 43 1 3.1412 -1.9132 -5.1047 44 1 3.9642 -3.0757 -7.1117 45 1 5.0464 -5.2753 -6.9085 46 1 5.3036 -6.3274 -4.6984 47 1 5.3401 -5.0668 -1.9802 48 1 1.5614 -2.0118 -3.5107 49 1 1.3611 -3.6211 -2.7764 50 1 1.6000 -2.6375 -0.5228 51 1 0.2746 -1.8447 -1.4081 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052635711.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:05 Heat of formation + Delta-G solvation = -13.335845 kcal Electronic energy + Delta-G solvation = -32000.807330 eV Core-core repulsion = 27901.382264 eV Total energy + Delta-G solvation = -4099.425066 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.63448 -39.77322 -37.90986 -36.56096 -35.46549 -34.68650 -32.69295 -31.57529 -30.78099 -30.11910 -28.92943 -27.78883 -26.05295 -25.66709 -24.09771 -23.11673 -22.85291 -21.98278 -21.34485 -19.71650 -18.38967 -18.27833 -17.10097 -16.66257 -16.40715 -15.99084 -15.84946 -15.48201 -15.01523 -14.82518 -14.65868 -14.50636 -14.27061 -14.14883 -13.97912 -13.75273 -13.32394 -13.01152 -12.59581 -12.45236 -12.24432 -12.16280 -12.12674 -12.00450 -11.88051 -11.73061 -11.56833 -11.37102 -11.21512 -10.91435 -10.88737 -10.78084 -10.62656 -10.48104 -10.34912 -10.16812 -9.60505 -9.48824 -9.02468 -8.65004 -8.44786 -8.41628 -7.70422 -7.63452 -6.05139 -4.09905 1.07312 1.11976 3.28438 3.34365 3.37286 3.41480 3.43818 3.74829 3.97098 4.05554 4.22792 4.43845 4.74765 4.80315 4.94341 5.03700 5.08116 5.12283 5.24810 5.25808 5.29789 5.33321 5.38255 5.46966 5.53660 5.61087 5.64017 5.66297 5.71987 5.77961 5.86693 5.90647 5.95382 6.04287 6.10876 6.14168 6.22322 6.25643 6.30436 6.40207 6.54697 6.59889 6.93808 7.00142 7.12343 7.24071 7.31980 7.43965 7.54156 7.79388 7.90987 8.22632 8.40936 8.89298 9.08420 9.55276 11.02956 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011094 B = 0.003257 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.242802 B = 8593.549580 C =10315.499679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.057 3.943 3 H 0.100 0.900 4 C 0.478 3.522 5 O -0.534 6.534 6 N -0.599 5.599 7 C 0.081 3.919 8 C 0.244 3.756 9 C -0.523 4.523 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.283 1.283 17 N -0.512 5.512 18 C 0.040 3.960 19 C 0.070 3.930 20 N -0.493 5.493 21 C 0.068 3.932 22 C -0.134 4.134 23 C -0.124 4.124 24 C -0.110 4.110 25 C -0.145 4.145 26 C 0.132 3.868 27 O -0.484 6.484 28 C 0.072 3.928 29 C 0.032 3.968 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.030 0.970 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.040 0.960 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.129 0.871 47 H 0.392 0.608 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.088 0.912 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.566 1.941 -21.470 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.055 4.055 3 H 0.118 0.882 4 C 0.264 3.736 5 O -0.412 6.412 6 N -0.332 5.332 7 C -0.063 4.063 8 C 0.125 3.875 9 C -0.562 4.562 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.236 5.236 18 C -0.088 4.088 19 C -0.056 4.056 20 N -0.214 5.214 21 C -0.027 4.027 22 C -0.155 4.155 23 C -0.143 4.143 24 C -0.129 4.129 25 C -0.164 4.164 26 C 0.086 3.914 27 O -0.293 6.293 28 C -0.054 4.054 29 C -0.095 4.095 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.147 0.853 47 H 0.248 0.752 48 H 0.056 0.944 49 H 0.094 0.906 50 H 0.106 0.894 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.959 0.991 -21.387 21.772 hybrid contribution 1.593 0.401 0.348 1.679 sum -2.366 1.392 -21.039 21.217 Atomic orbital electron populations 1.21802 0.92563 1.02948 1.02474 1.21932 0.96963 0.98961 0.87613 0.88223 1.21446 0.79129 0.88000 0.85053 1.90623 1.51241 1.15591 1.83702 1.48303 1.63413 1.09236 1.12200 1.21701 0.99891 0.82788 1.01927 1.19279 0.94230 0.93583 0.80440 1.21429 0.91617 1.35320 1.07870 0.92561 1.24936 0.98686 0.95012 0.95471 1.69943 1.35606 1.36095 1.11693 0.86458 0.85396 0.77879 0.77772 1.19839 1.20978 1.20863 1.62747 1.05484 1.21063 1.34337 1.22343 0.87839 1.00524 0.98094 1.22152 0.98279 0.87871 0.97319 1.59714 1.05865 1.20904 1.34961 1.19308 1.00163 0.93811 0.89392 1.21643 1.00593 1.00493 0.92722 1.21024 0.99465 0.95538 0.98279 1.21025 0.99322 0.95512 0.97007 1.21416 1.01780 1.00980 0.92241 1.18417 0.97185 0.90100 0.85688 1.84829 1.44767 1.70798 1.28942 1.22161 0.85932 0.99878 0.97434 1.22549 0.98033 0.90673 0.98265 0.91743 0.91706 0.91177 0.93669 0.90824 0.92316 0.95183 0.93936 0.92781 0.90559 0.90800 0.90632 0.94166 0.85901 0.86017 0.85770 0.85266 0.75177 0.94428 0.90576 0.89402 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.57 37.16 0.32 -1.42 16 2 C 0.06 0.86 2.32 -68.86 -0.16 0.70 16 3 H 0.10 1.36 6.00 -51.93 -0.31 1.05 16 4 C 0.48 9.65 5.89 -10.98 -0.06 9.58 16 5 O -0.53 -12.95 11.88 5.56 0.07 -12.88 16 6 N -0.60 -12.52 2.86 -182.95 -0.52 -13.04 16 7 C 0.08 1.26 10.07 59.85 0.60 1.86 16 8 C 0.24 6.38 5.16 -5.19 -0.03 6.35 16 9 C -0.52 -14.79 9.39 -34.44 -0.32 -15.11 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 13 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 N -0.51 -7.67 4.79 -227.86 -1.09 -8.76 16 18 C 0.04 0.64 5.10 -3.76 -0.02 0.62 16 19 C 0.07 0.97 5.31 -3.76 -0.02 0.95 16 20 N -0.49 -7.14 4.43 -170.80 -0.76 -7.89 16 21 C 0.07 0.88 4.74 -83.56 -0.40 0.49 16 22 C -0.13 -1.47 8.64 -39.41 -0.34 -1.81 16 23 C -0.12 -1.15 10.04 -39.58 -0.40 -1.55 16 24 C -0.11 -1.00 10.04 -39.56 -0.40 -1.39 16 25 C -0.15 -1.52 9.98 -39.47 -0.39 -1.91 16 26 C 0.13 1.70 6.72 -39.08 -0.26 1.44 16 27 O -0.48 -6.68 13.25 -19.78 -0.26 -6.94 16 28 C 0.07 1.01 5.36 -3.77 -0.02 0.99 16 29 C 0.03 0.49 4.74 -3.76 -0.02 0.48 16 30 H 0.06 0.85 6.25 -51.93 -0.32 0.53 16 31 H 0.06 0.75 7.95 -51.93 -0.41 0.34 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 35 H 0.06 0.75 5.83 -51.93 -0.30 0.45 16 36 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.08 1.57 5.91 -51.93 -0.31 1.26 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 42 H 0.04 0.51 7.24 -51.93 -0.38 0.13 16 43 H 0.12 1.25 7.06 -52.49 -0.37 0.88 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 46 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 47 H 0.39 4.07 9.06 45.56 0.41 4.49 16 48 H 0.04 0.48 7.45 -51.93 -0.39 0.09 16 49 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 50 H 0.09 1.71 5.60 -51.93 -0.29 1.41 16 51 H 0.08 1.04 5.99 -51.93 -0.31 0.73 16 LS Contribution 397.79 15.07 5.99 5.99 Total: -1.00 -34.19 397.79 -10.00 -44.19 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.13 Total: 6.53 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.02 Total: 1.91 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -1.63 Total: -55.64 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.20 Total: -19.82 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.19 -10.00 -44.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052635711.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.856 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds