Wall clock time and date at job start Wed Apr 1 2020 05:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47057 * 2 1 4 4 C 1.50707 * 109.46859 * 119.99487 * 2 1 3 5 5 O 1.21280 * 119.99763 * 93.67136 * 4 2 1 6 6 N 1.34770 * 120.00029 * 273.66375 * 4 2 1 7 7 C 1.46504 * 120.00295 * 0.02562 * 6 4 2 8 8 C 1.46498 * 120.00222 * 180.02562 * 6 4 2 9 9 C 1.50701 * 109.46940 * 90.00072 * 8 6 4 10 10 H 1.07994 * 120.00105 * 0.02562 * 9 8 6 11 11 C 1.37877 * 119.99713 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00271 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99809 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47185 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47124 * 120.00564 * 13 11 9 16 16 H 1.48506 * 109.47138 * 240.00214 * 13 11 9 17 17 N 1.46895 * 109.47238 * 239.99638 * 2 1 3 18 18 C 1.46957 * 111.00181 * 186.78642 * 17 2 1 19 19 C 1.53058 * 109.36500 * 183.18971 * 18 17 2 20 20 N 1.46957 * 109.36007 * 301.59483 * 19 18 17 21 21 C 1.39961 * 110.99772 * 183.18978 * 20 19 18 22 22 C 1.38722 * 120.09070 * 300.02078 * 21 20 19 23 23 C 1.38228 * 119.98394 * 179.97438 * 22 21 20 24 24 C 1.38255 * 120.15555 * 359.97438 * 23 22 21 25 25 C 1.38283 * 120.18127 * 0.02562 * 24 23 22 26 26 C 1.38501 * 120.02110 * 359.97438 * 25 24 23 27 27 O 1.36014 * 120.08323 * 179.97438 * 26 25 24 28 28 C 1.46951 * 110.88362 * 59.32091 * 20 19 18 29 29 C 1.46966 * 110.99798 * 310.58184 * 17 2 1 30 30 H 1.09000 * 109.46831 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47028 * 300.00724 * 1 2 3 32 32 H 1.09000 * 109.46929 * 60.00213 * 1 2 3 33 33 H 1.09001 * 109.46981 * 89.99519 * 7 6 4 34 34 H 1.08996 * 109.47241 * 209.99439 * 7 6 4 35 35 H 1.09002 * 109.46706 * 329.99766 * 7 6 4 36 36 H 1.08997 * 109.47689 * 210.00553 * 8 6 4 37 37 H 1.09007 * 109.46883 * 330.00535 * 8 6 4 38 38 H 0.97005 * 119.99964 * 180.02562 * 12 11 9 39 39 H 1.08999 * 109.49299 * 63.21452 * 18 17 2 40 40 H 1.09002 * 109.50357 * 303.16214 * 18 17 2 41 41 H 1.08997 * 109.48488 * 181.63073 * 19 18 17 42 42 H 1.08999 * 109.50741 * 61.56957 * 19 18 17 43 43 H 1.08002 * 120.01157 * 359.96160 * 22 21 20 44 44 H 1.08001 * 119.92137 * 180.02562 * 23 22 21 45 45 H 1.08004 * 119.90616 * 180.27793 * 24 23 22 46 46 H 1.08005 * 119.98635 * 179.97438 * 25 24 23 47 47 H 0.96703 * 113.99152 * 90.00163 * 27 26 25 48 48 H 1.09002 * 109.48893 * 60.64336 * 28 20 19 49 49 H 1.08992 * 109.49524 * 180.70717 * 28 20 19 50 50 H 1.09001 * 109.48809 * 296.77760 * 29 17 2 51 51 H 1.09001 * 109.48518 * 56.82244 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.2978 -1.8927 1.1823 6 7 2.1866 -0.0316 2.3847 7 6 1.8655 1.3966 2.4431 8 6 2.6754 -0.7220 3.5808 9 6 4.1796 -0.6432 3.6267 10 1 4.7177 -0.1299 2.8435 11 6 4.8689 -1.2256 4.6692 12 7 4.2137 -1.8502 5.6232 13 14 6.7335 -1.1274 4.7265 14 1 7.2262 -0.3766 3.5439 15 1 7.1544 -0.4291 5.9676 16 1 7.3021 -2.4992 4.7133 17 7 2.0197 -0.6925 -1.1993 18 6 3.4797 -0.8542 -1.1550 19 6 3.9578 -1.5065 -2.4544 20 7 3.2918 -2.8059 -2.6210 21 6 3.7583 -3.4658 -3.7637 22 6 3.6144 -2.8797 -5.0128 23 6 4.0764 -3.5331 -6.1398 24 6 4.6828 -4.7703 -6.0257 25 6 4.8298 -5.3606 -4.7839 26 6 4.3696 -4.7125 -3.6497 27 8 4.5130 -5.2922 -2.4277 28 6 1.8319 -2.6444 -2.6652 29 6 1.3537 -1.9920 -1.3659 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.8191 1.5226 2.7210 34 1 2.4994 1.8814 3.1855 35 1 2.0391 1.8482 1.4664 36 1 2.2594 -0.2477 4.4696 37 1 2.3671 -1.7670 3.5486 38 1 4.6986 -2.2597 6.3568 39 1 3.7501 -1.4867 -0.3095 40 1 3.9507 0.1225 -1.0437 41 1 5.0369 -1.6538 -2.4117 42 1 3.7118 -0.8611 -3.2977 43 1 3.1412 -1.9132 -5.1047 44 1 3.9642 -3.0757 -7.1117 45 1 5.0464 -5.2753 -6.9085 46 1 5.3036 -6.3274 -4.6984 47 1 5.3401 -5.0668 -1.9802 48 1 1.5614 -2.0118 -3.5107 49 1 1.3611 -3.6211 -2.7764 50 1 1.6000 -2.6375 -0.5228 51 1 0.2746 -1.8447 -1.4081 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052635711.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:04 Heat of formation + Delta-G solvation = -39.612438 kcal Electronic energy + Delta-G solvation = -32001.946768 eV Core-core repulsion = 27901.382264 eV Total energy + Delta-G solvation = -4100.564504 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.80035 -40.97004 -39.14873 -37.53929 -36.78712 -36.24955 -34.77186 -32.75590 -31.95153 -30.97205 -30.06042 -29.52566 -27.41413 -26.89615 -25.71872 -24.50260 -23.78543 -23.12863 -22.54701 -20.94701 -19.75947 -19.31768 -18.72848 -18.17185 -17.97980 -17.23232 -16.74827 -16.71965 -16.53342 -16.13133 -15.86130 -15.81095 -15.70377 -15.39032 -15.00450 -14.83168 -14.67511 -14.44340 -14.06686 -13.70558 -13.49162 -13.44253 -13.29504 -13.14541 -13.04246 -12.99253 -12.86625 -12.70623 -12.64352 -12.60245 -12.43035 -12.26309 -12.09216 -11.95435 -11.72527 -11.62300 -11.33275 -11.02206 -10.67750 -9.82822 -9.51744 -9.43455 -9.40063 -9.11748 -8.24760 -6.39789 0.25532 0.32033 1.32845 1.35555 1.47086 1.82469 2.30146 2.45827 2.64255 2.74174 2.83254 3.04577 3.37523 3.71818 3.81024 3.89129 3.99355 4.10882 4.15772 4.16430 4.25685 4.29012 4.42258 4.45340 4.47634 4.48518 4.56236 4.64424 4.67547 4.70474 4.79234 4.85435 4.94037 4.96194 4.97949 5.00991 5.02069 5.17528 5.23744 5.25849 5.35535 5.45766 5.51440 5.55175 5.78687 5.82926 5.84188 5.88701 6.01994 6.04383 6.34675 6.67839 6.79871 6.89732 7.26704 7.50412 8.82290 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011094 B = 0.003257 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.242802 B = 8593.549580 C =10315.499679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.066 3.934 3 H 0.126 0.874 4 C 0.470 3.530 5 O -0.584 6.584 6 N -0.609 5.609 7 C 0.076 3.924 8 C 0.261 3.739 9 C -0.537 4.537 10 H 0.051 0.949 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.266 1.266 15 H -0.268 1.268 16 H -0.283 1.283 17 N -0.494 5.494 18 C 0.043 3.957 19 C 0.080 3.920 20 N -0.515 5.515 21 C 0.046 3.954 22 C -0.137 4.137 23 C -0.119 4.119 24 C -0.104 4.104 25 C -0.149 4.149 26 C 0.103 3.897 27 O -0.507 6.507 28 C 0.079 3.921 29 C 0.037 3.963 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.020 0.980 37 H -0.008 1.008 38 H 0.267 0.733 39 H 0.023 0.977 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.132 0.868 44 H 0.153 0.847 45 H 0.156 0.844 46 H 0.141 0.859 47 H 0.399 0.601 48 H 0.058 0.942 49 H 0.068 0.932 50 H 0.040 0.960 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.373 4.096 -24.875 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.046 4.046 3 H 0.143 0.857 4 C 0.258 3.742 5 O -0.465 6.465 6 N -0.341 5.341 7 C -0.066 4.066 8 C 0.139 3.861 9 C -0.576 4.576 10 H 0.069 0.931 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.190 1.190 15 H -0.193 1.193 16 H -0.209 1.209 17 N -0.217 5.217 18 C -0.085 4.085 19 C -0.047 4.047 20 N -0.237 5.237 21 C -0.049 4.049 22 C -0.157 4.157 23 C -0.137 4.137 24 C -0.122 4.122 25 C -0.168 4.168 26 C 0.057 3.943 27 O -0.319 6.319 28 C -0.047 4.047 29 C -0.091 4.091 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.038 0.962 37 H 0.010 0.990 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.150 0.850 44 H 0.170 0.830 45 H 0.174 0.826 46 H 0.159 0.841 47 H 0.256 0.744 48 H 0.076 0.924 49 H 0.087 0.913 50 H 0.058 0.942 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.784 3.191 -24.813 25.301 hybrid contribution 1.509 -0.325 1.371 2.065 sum -2.275 2.866 -23.441 23.725 Atomic orbital electron populations 1.21828 0.89977 1.02763 1.04652 1.22127 0.98873 0.99103 0.84476 0.85655 1.22547 0.77985 0.87622 0.86071 1.90625 1.53115 1.18200 1.84581 1.48346 1.63402 1.11427 1.10886 1.21994 1.01347 0.79397 1.03870 1.18693 0.93481 0.91389 0.82555 1.21678 0.92765 1.35375 1.07760 0.93064 1.25870 1.03914 0.94433 0.95024 1.70063 1.37694 1.36814 1.12362 0.85377 0.79076 0.77895 0.78522 1.19022 1.19264 1.20899 1.62867 1.04793 1.20565 1.33459 1.22271 0.88649 1.00159 0.97421 1.22047 0.98080 0.88016 0.96564 1.59585 1.06109 1.21315 1.36716 1.19402 1.01529 0.94205 0.89726 1.21752 1.00712 1.00897 0.92293 1.21402 0.97979 0.95343 0.98978 1.21423 0.98059 0.95393 0.97295 1.21617 1.01547 1.01429 0.92167 1.18778 0.98767 0.90894 0.85840 1.84792 1.45656 1.71316 1.30107 1.22071 0.85923 0.99682 0.97051 1.22471 0.99251 0.90036 0.97294 0.93160 0.90537 0.87915 0.90902 0.91691 0.88787 0.96166 0.98968 0.92450 0.95846 0.89638 0.90810 0.92143 0.84977 0.82959 0.82597 0.84100 0.74409 0.92422 0.91325 0.94217 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.57 71.98 0.62 -2.37 16 2 C 0.07 1.90 2.32 44.17 0.10 2.00 16 3 H 0.13 2.98 6.00 -2.39 -0.01 2.96 16 4 C 0.47 19.55 5.89 87.66 0.52 20.06 16 5 O -0.58 -30.52 11.88 -3.03 -0.04 -30.56 16 6 N -0.61 -26.06 2.86 -851.12 -2.43 -28.49 16 7 C 0.08 2.25 10.07 127.77 1.29 3.53 16 8 C 0.26 14.40 5.16 85.63 0.44 14.85 16 9 C -0.54 -31.55 9.39 25.60 0.24 -31.31 16 10 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 11 C 0.01 0.37 5.46 84.65 0.46 0.84 16 12 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 13 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 17 N -0.49 -14.34 4.79 -874.82 -4.19 -18.53 16 18 C 0.04 1.41 5.10 86.31 0.44 1.85 16 19 C 0.08 2.18 5.31 86.31 0.46 2.64 16 20 N -0.51 -15.20 4.43 -694.28 -3.08 -18.28 16 21 C 0.05 1.17 4.74 38.22 0.18 1.35 16 22 C -0.14 -2.69 8.64 22.38 0.19 -2.50 16 23 C -0.12 -1.79 10.04 22.27 0.22 -1.57 16 24 C -0.10 -1.56 10.04 22.28 0.22 -1.34 16 25 C -0.15 -2.94 9.98 22.34 0.22 -2.72 16 26 C 0.10 2.68 6.72 22.59 0.15 2.83 16 27 O -0.51 -15.04 13.25 -93.70 -1.24 -16.28 16 28 C 0.08 2.19 5.36 86.31 0.46 2.65 16 29 C 0.04 1.15 4.74 86.31 0.41 1.56 16 30 H 0.05 1.27 6.25 -2.39 -0.01 1.26 16 31 H 0.08 1.54 7.95 -2.39 -0.02 1.52 16 32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 35 H 0.09 2.10 5.83 -2.39 -0.01 2.08 16 36 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 37 H -0.01 -0.50 7.42 -2.38 -0.02 -0.52 16 38 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 39 H 0.02 1.02 5.91 -2.39 -0.01 1.01 16 40 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 42 H 0.06 1.41 7.24 -2.39 -0.02 1.39 16 43 H 0.13 2.30 7.06 -2.91 -0.02 2.28 16 44 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 45 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 46 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 47 H 0.40 9.33 9.06 -74.06 -0.67 8.66 16 48 H 0.06 1.35 7.45 -2.39 -0.02 1.33 16 49 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 50 H 0.04 1.66 5.60 -2.39 -0.01 1.64 16 51 H 0.10 2.56 5.99 -2.39 -0.01 2.54 16 Total: -1.00 -80.99 397.79 -1.76 -82.75 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.27 Total: 26.43 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 6.63 Total: 12.35 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -9.41 Total: -122.46 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -1.28 Total: -46.84 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -80.99 -1.76 -82.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052635711.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.136 kcal (2) G-P(sol) polarization free energy of solvation -80.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds