Wall clock time and date at job start Wed Apr 1 2020 05:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47104 * 2 1 4 4 C 1.50706 * 109.47038 * 239.99712 * 2 1 3 5 5 O 1.21276 * 119.99573 * 244.94157 * 4 2 1 6 6 N 1.34774 * 119.99939 * 64.94902 * 4 2 1 7 7 C 1.46498 * 120.00159 * 5.34501 * 6 4 2 8 8 C 1.46504 * 119.99732 * 185.35064 * 6 4 2 9 9 C 1.50699 * 109.46958 * 89.99812 * 8 6 4 10 10 H 1.07996 * 120.00678 * 359.97438 * 9 8 6 11 11 C 1.37878 * 119.99788 * 179.97438 * 9 8 6 12 12 N 1.31508 * 120.00144 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99803 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47193 * 90.00337 * 13 11 9 15 15 H 1.48502 * 109.46994 * 209.99922 * 13 11 9 16 16 H 1.48502 * 109.47197 * 329.99986 * 13 11 9 17 17 N 1.46897 * 109.47024 * 119.99826 * 2 1 3 18 18 C 1.46959 * 110.99889 * 295.00190 * 17 2 1 19 19 C 1.53054 * 109.36154 * 183.18798 * 18 17 2 20 20 N 1.46955 * 109.36425 * 301.59547 * 19 18 17 21 21 C 1.39962 * 110.99823 * 183.19147 * 20 19 18 22 22 C 1.38736 * 120.08998 * 300.02330 * 21 20 19 23 23 C 1.38215 * 119.97810 * 179.97438 * 22 21 20 24 24 C 1.38263 * 120.16550 * 359.97438 * 23 22 21 25 25 C 1.38284 * 120.17660 * 0.02562 * 24 23 22 26 26 C 1.38499 * 120.01688 * 359.97438 * 25 24 23 27 27 O 1.36018 * 120.07890 * 179.97438 * 26 25 24 28 28 C 1.46959 * 110.87933 * 59.32506 * 20 19 18 29 29 C 1.46959 * 111.00178 * 58.79638 * 17 2 1 30 30 H 1.08991 * 109.47502 * 310.77724 * 1 2 3 31 31 H 1.08998 * 109.46780 * 70.78003 * 1 2 3 32 32 H 1.09006 * 109.47038 * 190.77181 * 1 2 3 33 33 H 1.08995 * 109.47337 * 96.00415 * 7 6 4 34 34 H 1.08995 * 109.47403 * 216.00803 * 7 6 4 35 35 H 1.09001 * 109.47056 * 336.00609 * 7 6 4 36 36 H 1.08997 * 109.46537 * 209.99619 * 8 6 4 37 37 H 1.08991 * 109.46791 * 329.99504 * 8 6 4 38 38 H 0.97003 * 120.00178 * 180.02562 * 12 11 9 39 39 H 1.08996 * 109.49137 * 63.22317 * 18 17 2 40 40 H 1.08997 * 109.48836 * 303.15674 * 18 17 2 41 41 H 1.08998 * 109.48350 * 181.63429 * 19 18 17 42 42 H 1.08997 * 109.50689 * 61.58023 * 19 18 17 43 43 H 1.07995 * 120.00589 * 359.95528 * 22 21 20 44 44 H 1.08008 * 119.91794 * 180.02562 * 23 22 21 45 45 H 1.08003 * 119.90802 * 180.28245 * 24 23 22 46 46 H 1.07996 * 119.98541 * 179.97438 * 25 24 23 47 47 H 0.96697 * 113.99785 * 89.99576 * 27 26 25 48 48 H 1.08994 * 109.48819 * 60.64568 * 28 20 19 49 49 H 1.08997 * 109.48836 * 180.70779 * 28 20 19 50 50 H 1.09001 * 109.49045 * 296.78518 * 29 17 2 51 51 H 1.09009 * 109.48558 * 56.84409 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.6539 -1.7462 -1.1213 6 7 1.7910 -0.1949 -2.4521 7 6 1.1440 1.1132 -2.5803 8 6 2.1756 -0.9426 -3.6518 9 6 1.0346 -1.8299 -4.0779 10 1 0.1150 -1.8367 -3.5116 11 6 1.1645 -2.6333 -5.1909 12 7 0.1690 -3.4080 -5.5625 13 14 2.7547 -2.6212 -6.1709 14 1 3.6787 -3.6491 -5.6278 15 1 2.4608 -2.9228 -7.5950 16 1 3.3888 -1.2822 -6.0691 17 7 2.0197 -0.6924 1.1994 18 6 1.6485 0.0395 2.4185 19 6 2.2435 -0.6698 3.6373 20 7 1.7489 -2.0528 3.6857 21 6 2.2154 -2.7125 4.8285 22 6 3.5788 -2.8618 5.0377 23 6 4.0369 -3.5132 6.1674 24 6 3.1396 -4.0167 7.0910 25 6 1.7793 -3.8717 6.8891 26 6 1.3121 -3.2202 5.7597 27 8 -0.0257 -3.0773 5.5596 28 6 2.1201 -2.7848 2.4666 29 6 1.5251 -2.0755 1.2480 30 1 -0.3634 0.6711 0.7781 31 1 -0.3633 0.3383 -0.9704 32 1 -0.3633 -1.0096 0.1921 33 1 1.9043 1.8837 -2.7084 34 1 0.4824 1.1081 -3.4464 35 1 0.5639 1.3213 -1.6812 36 1 2.4124 -0.2444 -4.4546 37 1 3.0502 -1.5551 -3.4332 38 1 0.2605 -3.9735 -6.3453 39 1 0.5627 0.0686 2.5089 40 1 2.0366 1.0566 2.3643 41 1 1.9453 -0.1450 4.5449 42 1 3.3307 -0.6748 3.5607 43 1 4.2817 -2.4693 4.3180 44 1 5.0985 -3.6285 6.3295 45 1 3.5023 -4.5210 7.9745 46 1 1.0812 -4.2666 7.6123 47 1 -0.3957 -2.2680 5.9379 48 1 3.2059 -2.8139 2.3764 49 1 1.7320 -3.8019 2.5208 50 1 0.4378 -2.0704 1.3249 51 1 1.8232 -2.6003 0.3402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052635712.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:08 Heat of formation + Delta-G solvation = -1.371675 kcal Electronic energy + Delta-G solvation = -31555.680977 eV Core-core repulsion = 27456.774716 eV Total energy + Delta-G solvation = -4098.906260 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.70014 -39.79667 -38.20360 -36.74224 -35.62824 -34.95832 -32.64941 -31.45275 -30.87879 -30.22829 -29.13589 -28.07772 -26.35307 -25.67767 -23.91647 -23.58497 -22.89226 -22.06313 -21.44277 -19.42777 -18.54733 -18.43653 -17.11273 -16.96222 -16.50769 -16.01702 -15.95587 -15.69806 -15.01903 -14.93028 -14.73093 -14.62048 -14.37859 -14.10658 -13.96552 -13.83764 -13.73709 -13.06999 -12.80586 -12.54396 -12.42701 -12.33114 -12.28001 -12.19836 -11.98095 -11.89630 -11.63769 -11.59523 -11.26126 -11.10547 -10.99247 -10.73705 -10.69890 -10.51182 -10.46831 -10.12859 -9.54076 -9.11217 -8.86166 -8.72794 -8.59250 -8.57811 -8.07395 -7.67182 -6.09277 -4.08194 0.98063 1.03084 3.29440 3.32173 3.35102 3.35580 3.37668 3.58858 3.66477 4.06182 4.18111 4.39627 4.67105 4.74138 4.79957 4.88903 5.03703 5.09497 5.15510 5.19514 5.21314 5.25059 5.28660 5.34178 5.40903 5.48682 5.53864 5.60830 5.62214 5.67587 5.80216 5.82150 5.85911 5.89919 6.00471 6.06056 6.13880 6.18918 6.21829 6.33693 6.44322 6.49421 6.68928 6.81333 6.93906 7.05617 7.18532 7.24420 7.36449 7.60790 7.61159 8.26449 8.46710 8.92344 9.00680 9.51278 11.03977 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.002466 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.162506 B =11350.826375 C =11893.899013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.066 3.934 3 H 0.100 0.900 4 C 0.517 3.483 5 O -0.527 6.527 6 N -0.597 5.597 7 C 0.069 3.931 8 C 0.216 3.784 9 C -0.529 4.529 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.266 1.266 17 N -0.516 5.516 18 C 0.055 3.945 19 C 0.064 3.936 20 N -0.498 5.498 21 C 0.067 3.933 22 C -0.132 4.132 23 C -0.121 4.121 24 C -0.110 4.110 25 C -0.144 4.144 26 C 0.128 3.872 27 O -0.484 6.484 28 C 0.070 3.930 29 C 0.039 3.961 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.029 0.971 37 H 0.038 0.962 38 H 0.265 0.735 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.129 0.871 47 H 0.387 0.613 48 H 0.046 0.954 49 H 0.078 0.922 50 H 0.042 0.958 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 8.277 24.727 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.046 4.046 3 H 0.117 0.883 4 C 0.303 3.697 5 O -0.403 6.403 6 N -0.329 5.329 7 C -0.074 4.074 8 C 0.095 3.905 9 C -0.567 4.567 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.240 5.240 18 C -0.073 4.073 19 C -0.063 4.063 20 N -0.220 5.220 21 C -0.027 4.027 22 C -0.153 4.153 23 C -0.140 4.140 24 C -0.128 4.128 25 C -0.163 4.163 26 C 0.082 3.918 27 O -0.293 6.293 28 C -0.056 4.056 29 C -0.088 4.088 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.147 0.853 47 H 0.242 0.758 48 H 0.065 0.935 49 H 0.097 0.903 50 H 0.060 0.940 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.674 7.067 24.286 25.559 hybrid contribution 0.563 0.436 -0.426 0.830 sum 4.238 7.503 23.860 25.369 Atomic orbital electron populations 1.22607 0.95428 1.03537 1.03469 1.21607 0.94246 0.98583 0.90153 0.88263 1.20070 0.80209 0.85426 0.83974 1.90546 1.40327 1.23847 1.85620 1.47766 1.59175 1.19328 1.06625 1.21963 0.97564 0.84662 1.03252 1.19652 0.97232 0.91907 0.81695 1.21319 1.00686 1.23006 1.11731 0.90803 1.24853 0.96355 0.94745 0.97036 1.69894 1.31499 1.26073 1.26110 0.86849 0.84220 0.79179 0.79429 1.19893 1.21109 1.19075 1.62117 1.59077 1.02489 1.00306 1.22172 0.98956 0.97045 0.89117 1.22188 0.98179 0.88019 0.97879 1.59870 1.59418 1.02046 1.00691 1.19268 0.91158 0.98557 0.93740 1.21683 0.95607 0.99732 0.98239 1.21067 0.99862 0.98708 0.94361 1.21047 0.92615 0.99703 0.99429 1.21392 0.96185 1.01525 0.97247 1.18345 0.83326 0.97628 0.92455 1.84847 1.17969 1.45848 1.80647 1.22212 0.99024 0.97110 0.87260 1.22670 0.97476 0.88887 0.99751 0.91930 0.90110 0.91190 0.93613 0.90761 0.90925 0.95313 0.94419 0.92558 0.93592 0.90380 0.90650 0.93615 0.85696 0.85866 0.85682 0.85271 0.75756 0.93543 0.90318 0.94034 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 7.93 37.16 0.29 -2.29 16 2 C 0.07 0.99 1.94 -68.86 -0.13 0.85 16 3 H 0.10 1.25 7.72 -51.93 -0.40 0.85 16 4 C 0.52 10.37 6.77 -10.98 -0.07 10.30 16 5 O -0.53 -12.59 13.26 5.56 0.07 -12.52 16 6 N -0.60 -12.12 2.85 -182.96 -0.52 -12.64 16 7 C 0.07 1.04 9.71 59.85 0.58 1.62 16 8 C 0.22 5.26 4.30 -5.19 -0.02 5.24 16 9 C -0.53 -15.05 9.94 -34.44 -0.34 -15.40 16 10 H 0.07 2.30 8.06 -52.49 -0.42 1.87 16 11 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 12 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 13 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 14 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 17 N -0.52 -7.57 4.52 -227.87 -1.03 -8.60 16 18 C 0.06 0.63 5.26 -3.76 -0.02 0.61 16 19 C 0.06 0.70 5.31 -3.77 -0.02 0.68 16 20 N -0.50 -6.17 4.44 -170.80 -0.76 -6.93 16 21 C 0.07 0.78 4.74 -83.56 -0.40 0.38 16 22 C -0.13 -1.39 8.65 -39.41 -0.34 -1.73 16 23 C -0.12 -1.07 10.04 -39.58 -0.40 -1.46 16 24 C -0.11 -0.90 10.04 -39.56 -0.40 -1.29 16 25 C -0.14 -1.31 9.98 -39.47 -0.39 -1.70 16 26 C 0.13 1.40 6.72 -39.08 -0.26 1.13 16 27 O -0.48 -5.19 13.25 -19.80 -0.26 -5.45 16 28 C 0.07 1.01 5.36 -3.77 -0.02 0.99 16 29 C 0.04 0.64 4.73 -3.77 -0.02 0.62 16 30 H 0.06 0.68 7.16 -51.93 -0.37 0.31 16 31 H 0.08 1.11 5.40 -51.93 -0.28 0.83 16 32 H 0.07 1.08 5.92 -51.93 -0.31 0.77 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.17 8.12 -51.93 -0.42 0.74 16 35 H 0.07 0.89 4.12 -51.93 -0.21 0.68 16 36 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 37 H 0.04 0.99 6.78 -51.93 -0.35 0.64 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.05 0.52 6.85 -51.93 -0.36 0.17 16 40 H 0.08 0.75 8.12 -51.93 -0.42 0.32 16 41 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 42 H 0.05 0.52 7.24 -51.93 -0.38 0.14 16 43 H 0.13 1.30 7.06 -52.49 -0.37 0.93 16 44 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 45 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 46 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.39 2.45 9.06 45.56 0.41 2.86 16 48 H 0.05 0.70 7.45 -51.93 -0.39 0.31 16 49 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 50 H 0.04 0.68 6.24 -51.93 -0.32 0.36 16 51 H 0.12 2.43 5.22 -51.92 -0.27 2.16 16 LS Contribution 391.92 15.07 5.91 5.91 Total: -1.00 -34.89 391.92 -9.48 -44.37 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.94 Total: 5.18 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -2.06 Total: 0.56 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -1.54 Total: -55.00 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.19 Total: -17.97 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.89 -9.48 -44.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052635712.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.002 kcal (2) G-P(sol) polarization free energy of solvation -34.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds