Wall clock time and date at job start Wed Apr 1 2020 05:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47104 * 2 1 4 4 C 1.50706 * 109.47038 * 239.99712 * 2 1 3 5 5 O 1.21276 * 119.99573 * 244.94157 * 4 2 1 6 6 N 1.34774 * 119.99939 * 64.94902 * 4 2 1 7 7 C 1.46498 * 120.00159 * 5.34501 * 6 4 2 8 8 C 1.46504 * 119.99732 * 185.35064 * 6 4 2 9 9 C 1.50699 * 109.46958 * 89.99812 * 8 6 4 10 10 H 1.07996 * 120.00678 * 359.97438 * 9 8 6 11 11 C 1.37878 * 119.99788 * 179.97438 * 9 8 6 12 12 N 1.31508 * 120.00144 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99803 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47193 * 90.00337 * 13 11 9 15 15 H 1.48502 * 109.46994 * 209.99922 * 13 11 9 16 16 H 1.48502 * 109.47197 * 329.99986 * 13 11 9 17 17 N 1.46897 * 109.47024 * 119.99826 * 2 1 3 18 18 C 1.46959 * 110.99889 * 295.00190 * 17 2 1 19 19 C 1.53054 * 109.36154 * 183.18798 * 18 17 2 20 20 N 1.46955 * 109.36425 * 301.59547 * 19 18 17 21 21 C 1.39962 * 110.99823 * 183.19147 * 20 19 18 22 22 C 1.38736 * 120.08998 * 300.02330 * 21 20 19 23 23 C 1.38215 * 119.97810 * 179.97438 * 22 21 20 24 24 C 1.38263 * 120.16550 * 359.97438 * 23 22 21 25 25 C 1.38284 * 120.17660 * 0.02562 * 24 23 22 26 26 C 1.38499 * 120.01688 * 359.97438 * 25 24 23 27 27 O 1.36018 * 120.07890 * 179.97438 * 26 25 24 28 28 C 1.46959 * 110.87933 * 59.32506 * 20 19 18 29 29 C 1.46959 * 111.00178 * 58.79638 * 17 2 1 30 30 H 1.08991 * 109.47502 * 310.77724 * 1 2 3 31 31 H 1.08998 * 109.46780 * 70.78003 * 1 2 3 32 32 H 1.09006 * 109.47038 * 190.77181 * 1 2 3 33 33 H 1.08995 * 109.47337 * 96.00415 * 7 6 4 34 34 H 1.08995 * 109.47403 * 216.00803 * 7 6 4 35 35 H 1.09001 * 109.47056 * 336.00609 * 7 6 4 36 36 H 1.08997 * 109.46537 * 209.99619 * 8 6 4 37 37 H 1.08991 * 109.46791 * 329.99504 * 8 6 4 38 38 H 0.97003 * 120.00178 * 180.02562 * 12 11 9 39 39 H 1.08996 * 109.49137 * 63.22317 * 18 17 2 40 40 H 1.08997 * 109.48836 * 303.15674 * 18 17 2 41 41 H 1.08998 * 109.48350 * 181.63429 * 19 18 17 42 42 H 1.08997 * 109.50689 * 61.58023 * 19 18 17 43 43 H 1.07995 * 120.00589 * 359.95528 * 22 21 20 44 44 H 1.08008 * 119.91794 * 180.02562 * 23 22 21 45 45 H 1.08003 * 119.90802 * 180.28245 * 24 23 22 46 46 H 1.07996 * 119.98541 * 179.97438 * 25 24 23 47 47 H 0.96697 * 113.99785 * 89.99576 * 27 26 25 48 48 H 1.08994 * 109.48819 * 60.64568 * 28 20 19 49 49 H 1.08997 * 109.48836 * 180.70779 * 28 20 19 50 50 H 1.09001 * 109.49045 * 296.78518 * 29 17 2 51 51 H 1.09009 * 109.48558 * 56.84409 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.6539 -1.7462 -1.1213 6 7 1.7910 -0.1949 -2.4521 7 6 1.1440 1.1132 -2.5803 8 6 2.1756 -0.9426 -3.6518 9 6 1.0346 -1.8299 -4.0779 10 1 0.1150 -1.8367 -3.5116 11 6 1.1645 -2.6333 -5.1909 12 7 0.1690 -3.4080 -5.5625 13 14 2.7547 -2.6212 -6.1709 14 1 3.6787 -3.6491 -5.6278 15 1 2.4608 -2.9228 -7.5950 16 1 3.3888 -1.2822 -6.0691 17 7 2.0197 -0.6924 1.1994 18 6 1.6485 0.0395 2.4185 19 6 2.2435 -0.6698 3.6373 20 7 1.7489 -2.0528 3.6857 21 6 2.2154 -2.7125 4.8285 22 6 3.5788 -2.8618 5.0377 23 6 4.0369 -3.5132 6.1674 24 6 3.1396 -4.0167 7.0910 25 6 1.7793 -3.8717 6.8891 26 6 1.3121 -3.2202 5.7597 27 8 -0.0257 -3.0773 5.5596 28 6 2.1201 -2.7848 2.4666 29 6 1.5251 -2.0755 1.2480 30 1 -0.3634 0.6711 0.7781 31 1 -0.3633 0.3383 -0.9704 32 1 -0.3633 -1.0096 0.1921 33 1 1.9043 1.8837 -2.7084 34 1 0.4824 1.1081 -3.4464 35 1 0.5639 1.3213 -1.6812 36 1 2.4124 -0.2444 -4.4546 37 1 3.0502 -1.5551 -3.4332 38 1 0.2605 -3.9735 -6.3453 39 1 0.5627 0.0686 2.5089 40 1 2.0366 1.0566 2.3643 41 1 1.9453 -0.1450 4.5449 42 1 3.3307 -0.6748 3.5607 43 1 4.2817 -2.4693 4.3180 44 1 5.0985 -3.6285 6.3295 45 1 3.5023 -4.5210 7.9745 46 1 1.0812 -4.2666 7.6123 47 1 -0.3957 -2.2680 5.9379 48 1 3.2059 -2.8139 2.3764 49 1 1.7320 -3.8019 2.5208 50 1 0.4378 -2.0704 1.3249 51 1 1.8232 -2.6003 0.3402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052635712.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:07 Heat of formation + Delta-G solvation = -28.813074 kcal Electronic energy + Delta-G solvation = -31556.870925 eV Core-core repulsion = 27456.774716 eV Total energy + Delta-G solvation = -4100.096209 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.72439 -40.97648 -39.34276 -37.54952 -36.77199 -36.52958 -34.74370 -32.64102 -31.95548 -31.02031 -30.42754 -29.51633 -27.66337 -26.80768 -25.40866 -24.68918 -23.86992 -23.27068 -22.51918 -20.53439 -19.90938 -19.30436 -19.14488 -18.04073 -17.86319 -17.35770 -16.74223 -16.65710 -16.40489 -16.18490 -16.03750 -15.92602 -15.57652 -15.31929 -14.97111 -14.88416 -14.71073 -14.68512 -14.23029 -14.03012 -13.68570 -13.49097 -13.41965 -13.28994 -13.12070 -13.06583 -12.87976 -12.76317 -12.61046 -12.48662 -12.22818 -12.15454 -12.03696 -11.93570 -11.82743 -11.74328 -11.35157 -10.84240 -10.35809 -9.83698 -9.57435 -9.48209 -9.36691 -9.21481 -8.35000 -6.39764 0.24257 0.31559 1.31413 1.35614 1.43889 1.79352 2.22347 2.29943 2.61839 2.75377 2.94274 2.99654 3.36461 3.61206 3.77750 3.97873 4.02441 4.06644 4.14749 4.15079 4.20256 4.27365 4.32007 4.35249 4.45227 4.50806 4.53814 4.62365 4.66471 4.69417 4.73571 4.79103 4.82754 4.90969 4.94166 4.95401 4.96705 4.98480 5.10093 5.24923 5.34427 5.43869 5.45446 5.51401 5.63614 5.77019 5.80560 5.92857 6.12906 6.24229 6.30798 6.61624 6.73667 6.96098 7.21417 7.45999 8.81827 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.002466 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.162506 B =11350.826375 C =11893.899013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.077 3.923 3 H 0.138 0.862 4 C 0.503 3.497 5 O -0.576 6.576 6 N -0.606 5.606 7 C 0.063 3.937 8 C 0.224 3.776 9 C -0.533 4.533 10 H 0.029 0.971 11 C 0.011 3.989 12 N -0.945 5.945 13 Si 0.947 3.053 14 H -0.278 1.278 15 H -0.275 1.275 16 H -0.238 1.238 17 N -0.526 5.526 18 C 0.057 3.943 19 C 0.065 3.935 20 N -0.497 5.497 21 C 0.042 3.958 22 C -0.142 4.142 23 C -0.124 4.124 24 C -0.103 4.103 25 C -0.147 4.147 26 C 0.116 3.884 27 O -0.501 6.501 28 C 0.081 3.919 29 C 0.051 3.949 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.049 0.951 37 H 0.017 0.983 38 H 0.268 0.732 39 H 0.051 0.949 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.040 0.960 43 H 0.118 0.882 44 H 0.144 0.856 45 H 0.155 0.845 46 H 0.147 0.853 47 H 0.403 0.597 48 H 0.034 0.966 49 H 0.063 0.937 50 H 0.034 0.966 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.549 10.860 26.867 29.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.034 4.034 3 H 0.155 0.845 4 C 0.292 3.708 5 O -0.456 6.456 6 N -0.338 5.338 7 C -0.078 4.078 8 C 0.102 3.898 9 C -0.572 4.572 10 H 0.048 0.952 11 C -0.187 4.187 12 N -0.585 5.585 13 Si 0.770 3.230 14 H -0.204 1.204 15 H -0.200 1.200 16 H -0.161 1.161 17 N -0.250 5.250 18 C -0.070 4.070 19 C -0.061 4.061 20 N -0.219 5.219 21 C -0.052 4.052 22 C -0.163 4.163 23 C -0.142 4.142 24 C -0.121 4.121 25 C -0.166 4.166 26 C 0.070 3.930 27 O -0.313 6.313 28 C -0.046 4.046 29 C -0.077 4.077 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.067 0.933 37 H 0.035 0.965 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.126 0.874 41 H 0.117 0.883 42 H 0.058 0.942 43 H 0.136 0.864 44 H 0.162 0.838 45 H 0.173 0.827 46 H 0.165 0.835 47 H 0.261 0.739 48 H 0.053 0.947 49 H 0.082 0.918 50 H 0.052 0.948 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.849 9.723 26.458 28.602 hybrid contribution 0.115 -0.408 -0.970 1.059 sum 4.964 9.315 25.488 27.587 Atomic orbital electron populations 1.22557 0.94246 1.02834 1.04620 1.21610 0.94866 0.99290 0.87651 0.84491 1.21135 0.79286 0.85061 0.85330 1.90536 1.42494 1.26101 1.86509 1.47880 1.59486 1.20815 1.05601 1.22265 0.98476 0.82660 1.04416 1.19297 0.94657 0.91887 0.83996 1.21541 1.00411 1.23995 1.11220 0.95243 1.25832 1.00253 0.94196 0.98405 1.70046 1.34080 1.27321 1.27094 0.85730 0.79178 0.80345 0.77778 1.20399 1.19985 1.16134 1.62084 1.59412 1.01870 1.01677 1.22325 0.99486 0.97911 0.87319 1.22268 0.97829 0.87281 0.98743 1.59819 1.59566 1.02636 0.99923 1.19393 0.91899 1.00080 0.93804 1.21718 0.95114 1.00457 0.98967 1.21355 1.01231 0.97930 0.93709 1.21417 0.92102 0.98627 0.99961 1.21645 0.97099 1.00899 0.96942 1.18546 0.83235 0.98093 0.93082 1.84799 1.18123 1.47168 1.81172 1.21949 0.97900 0.96578 0.88144 1.22324 0.96890 0.90107 0.98418 0.88084 0.90398 0.93952 0.90383 0.91821 0.87920 0.93329 0.96477 0.92299 0.93050 0.87426 0.88268 0.94213 0.86351 0.83781 0.82717 0.83487 0.73861 0.94737 0.91826 0.94772 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.69 7.93 71.98 0.57 -4.12 16 2 C 0.08 2.19 1.94 44.17 0.09 2.28 16 3 H 0.14 2.89 7.72 -2.39 -0.02 2.87 16 4 C 0.50 20.50 6.77 87.66 0.59 21.09 16 5 O -0.58 -29.06 13.26 -3.02 -0.04 -29.10 16 6 N -0.61 -24.55 2.85 -851.16 -2.43 -26.98 16 7 C 0.06 1.77 9.71 127.77 1.24 3.01 16 8 C 0.22 11.04 4.30 85.63 0.37 11.41 16 9 C -0.53 -31.56 9.94 25.60 0.25 -31.31 16 10 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 11 C 0.01 0.66 5.47 84.66 0.46 1.13 16 12 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 13 Si 0.95 45.15 27.47 68.60 1.88 47.03 16 14 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 15 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 17 N -0.53 -15.12 4.52 -874.85 -3.96 -19.08 16 18 C 0.06 1.14 5.26 86.31 0.45 1.59 16 19 C 0.07 1.31 5.31 86.31 0.46 1.77 16 20 N -0.50 -12.27 4.44 -694.28 -3.08 -15.35 16 21 C 0.04 0.97 4.74 38.22 0.18 1.15 16 22 C -0.14 -2.92 8.65 22.38 0.19 -2.72 16 23 C -0.12 -1.95 10.04 22.27 0.22 -1.73 16 24 C -0.10 -1.42 10.04 22.29 0.22 -1.20 16 25 C -0.15 -2.38 9.98 22.34 0.22 -2.16 16 26 C 0.12 2.43 6.72 22.59 0.15 2.58 16 27 O -0.50 -10.40 13.25 -93.75 -1.24 -11.64 16 28 C 0.08 2.49 5.36 86.31 0.46 2.96 16 29 C 0.05 1.74 4.73 86.31 0.41 2.14 16 30 H 0.10 1.82 7.16 -2.39 -0.02 1.80 16 31 H 0.08 2.03 5.40 -2.39 -0.01 2.02 16 32 H 0.04 1.32 5.92 -2.38 -0.01 1.31 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 35 H 0.10 2.22 4.12 -2.39 -0.01 2.21 16 36 H 0.05 2.20 7.13 -2.39 -0.02 2.18 16 37 H 0.02 0.92 6.78 -2.39 -0.02 0.90 16 38 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 39 H 0.05 1.00 6.85 -2.39 -0.02 0.99 16 40 H 0.11 1.57 8.12 -2.39 -0.02 1.55 16 41 H 0.10 1.54 8.13 -2.39 -0.02 1.52 16 42 H 0.04 0.85 7.24 -2.39 -0.02 0.84 16 43 H 0.12 2.50 7.06 -2.91 -0.02 2.48 16 44 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 45 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 46 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 47 H 0.40 4.68 9.06 -74.06 -0.67 4.01 16 48 H 0.03 1.11 7.45 -2.39 -0.02 1.09 16 49 H 0.06 2.08 8.13 -2.39 -0.02 2.06 16 50 H 0.03 1.19 6.24 -2.39 -0.01 1.17 16 51 H 0.08 3.34 5.22 -2.38 -0.01 3.33 16 Total: -1.00 -82.14 391.92 -1.78 -83.92 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.23 Total: 23.39 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 6.56 Total: 7.87 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -9.16 Total: -121.47 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -1.28 Total: -40.75 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Total: -82.14 -1.78 -83.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052635712.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.103 kcal (2) G-P(sol) polarization free energy of solvation -82.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds