Wall clock time and date at job start Wed Apr 1 2020 05:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 119.99630 * 2 1 4 4 O 1.21553 * 120.00182 * 359.97438 * 3 2 1 5 5 C 1.47846 * 119.99757 * 180.02562 * 3 2 1 6 6 C 1.39575 * 120.14295 * 179.97438 * 5 3 2 7 7 C 1.37963 * 119.85107 * 180.02562 * 6 5 3 8 8 C 1.38361 * 120.14492 * 0.03126 * 7 6 5 9 9 C 1.50704 * 119.85248 * 179.97438 * 8 7 6 10 10 N 1.46897 * 109.47320 * 89.99595 * 9 8 7 11 11 C 1.46899 * 111.00026 * 66.04539 * 10 9 8 12 12 C 1.46892 * 110.99965 * 189.99964 * 10 9 8 13 13 H 1.09005 * 109.47177 * 192.38490 * 12 10 9 14 14 C 1.52995 * 109.47456 * 312.38443 * 12 10 9 15 15 C 1.50704 * 109.47279 * 72.38959 * 12 10 9 16 16 O 1.21281 * 119.99785 * 343.89654 * 15 12 10 17 17 N 1.34773 * 120.00159 * 163.90855 * 15 12 10 18 18 C 1.46506 * 120.00208 * 359.97438 * 17 15 12 19 19 C 1.46497 * 119.99968 * 179.97438 * 17 15 12 20 20 C 1.50703 * 109.47412 * 89.99503 * 19 17 15 21 21 H 1.08005 * 119.99946 * 359.97438 * 20 19 17 22 22 C 1.37874 * 120.00207 * 180.02562 * 20 19 17 23 23 N 1.31517 * 119.99794 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00027 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47182 * 60.00042 * 24 22 20 26 26 H 1.48507 * 109.47089 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47250 * 299.99824 * 24 22 20 28 28 C 1.38356 * 120.29464 * 0.22397 * 8 7 6 29 29 C 1.37966 * 120.14202 * 359.49244 * 28 8 7 30 30 H 1.09006 * 109.47199 * 299.99729 * 1 2 3 31 31 H 1.08994 * 109.47391 * 59.99847 * 1 2 3 32 32 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 33 33 H 0.96991 * 119.99993 * 180.02562 * 2 1 3 34 34 H 1.07998 * 120.07589 * 0.02562 * 6 5 3 35 35 H 1.07997 * 119.92398 * 179.97438 * 7 6 5 36 36 H 1.08997 * 109.46556 * 329.99513 * 9 8 7 37 37 H 1.08998 * 109.46902 * 209.99447 * 9 8 7 38 38 H 1.09005 * 109.47319 * 177.74985 * 11 10 9 39 39 H 1.09007 * 109.47258 * 297.74099 * 11 10 9 40 40 H 1.08996 * 109.47324 * 57.74236 * 11 10 9 41 41 H 1.09005 * 109.46889 * 59.99871 * 14 12 10 42 42 H 1.08999 * 109.47487 * 179.97438 * 14 12 10 43 43 H 1.09002 * 109.47391 * 300.00633 * 14 12 10 44 44 H 1.08997 * 109.46656 * 90.00561 * 18 17 15 45 45 H 1.08997 * 109.47284 * 210.00889 * 18 17 15 46 46 H 1.09003 * 109.47101 * 330.00925 * 18 17 15 47 47 H 1.09000 * 109.46980 * 209.99526 * 19 17 15 48 48 H 1.09003 * 109.47502 * 329.99506 * 19 17 15 49 49 H 0.97003 * 120.00108 * 179.97438 * 23 22 20 50 50 H 1.07994 * 119.93249 * 179.74842 * 28 8 7 51 51 H 1.07998 * 120.06931 * 180.24710 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5310 2.2199 -0.0005 5 6 3.6173 1.1673 -0.0006 6 6 4.3181 2.3743 -0.0011 7 6 5.6977 2.3673 -0.0022 8 6 6.3865 1.1673 -0.0034 9 6 7.8935 1.1674 -0.0051 10 7 8.3848 1.1670 1.3793 11 6 8.0362 -0.0864 2.0613 12 6 9.8336 1.4052 1.4237 13 1 10.2077 1.1843 2.4235 14 6 10.5309 0.4994 0.4068 15 6 10.1162 2.8472 1.0890 16 8 9.2612 3.5258 0.5604 17 7 11.3191 3.3825 1.3767 18 6 12.3519 2.5629 2.0155 19 6 11.5940 4.7841 1.0508 20 6 11.2080 5.6563 2.2176 21 1 10.7984 5.2111 3.1124 22 6 11.3767 7.0226 2.1425 23 7 11.8749 7.5647 1.0528 24 14 10.8975 8.1037 3.5886 25 1 11.6862 7.7100 4.7837 26 1 11.1763 9.5245 3.2582 27 1 9.4499 7.9361 3.8736 28 6 5.6978 -0.0327 -0.0082 29 6 4.3182 -0.0397 -0.0012 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.9499 -0.8400 -0.0004 34 1 3.7817 3.3117 -0.0007 35 1 6.2412 3.3006 -0.0030 36 1 8.2561 2.0575 -0.5192 37 1 8.2562 0.2775 -0.5196 38 1 8.4461 -0.0768 3.0713 39 1 6.9516 -0.1839 2.1105 40 1 8.4519 -0.9287 1.5084 41 1 10.1568 0.7203 -0.5930 42 1 11.6059 0.6765 0.4394 43 1 10.3265 -0.5435 0.6489 44 1 12.9553 2.0766 1.2490 45 1 12.9893 3.1969 2.6318 46 1 11.8794 1.8054 2.6408 47 1 12.6566 4.9067 0.8414 48 1 11.0150 5.0735 0.1737 49 1 11.9932 8.5260 0.9998 50 1 6.2413 -0.9658 -0.0132 51 1 3.7819 -0.9771 -0.0009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052687024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:26 Heat of formation + Delta-G solvation = -25.479201 kcal Electronic energy + Delta-G solvation = -30645.753707 eV Core-core repulsion = 26545.802066 eV Total energy + Delta-G solvation = -4099.951641 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.42830 -39.75303 -38.56507 -36.79477 -34.94646 -34.76034 -32.80880 -32.22458 -31.09469 -30.29054 -28.07020 -27.70684 -26.45107 -26.01772 -25.17229 -23.58024 -22.57741 -22.36970 -20.94684 -20.30221 -18.43811 -18.28246 -16.83189 -16.43424 -16.33581 -16.10994 -15.51252 -15.44225 -15.04653 -15.00145 -14.72921 -14.50596 -14.34288 -13.96735 -13.78872 -13.63214 -13.34410 -13.32767 -13.11327 -12.65412 -12.62104 -12.52025 -12.26264 -12.18200 -12.04908 -11.91927 -11.55325 -11.46800 -11.35991 -11.23949 -11.09772 -10.93992 -10.83913 -10.53342 -10.16296 -10.12162 -9.60794 -9.48719 -9.03962 -8.97971 -8.71340 -8.40521 -8.12463 -7.61146 -6.01705 -4.06114 0.73546 1.32497 2.70757 2.92292 3.34441 3.37869 3.39198 3.45472 3.66654 3.85960 4.29265 4.46226 4.49104 4.61535 4.78202 4.83605 4.92608 4.97921 5.04847 5.13575 5.16447 5.22041 5.30299 5.33008 5.34876 5.40856 5.45104 5.53134 5.57529 5.69785 5.72994 5.76005 5.85004 5.90564 5.92045 6.01282 6.04270 6.07736 6.16347 6.22944 6.34953 6.61975 6.84296 6.93471 7.09090 7.16271 7.17274 7.45675 7.56542 7.94931 7.96547 8.26018 8.44057 8.93450 9.13834 9.59046 11.06273 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.002496 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.105986 B =11215.720304 C =12990.131917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.735 5.735 3 C 0.560 3.440 4 O -0.536 6.536 5 C -0.146 4.146 6 C -0.058 4.058 7 C -0.096 4.096 8 C -0.039 4.039 9 C 0.081 3.919 10 N -0.512 5.512 11 C 0.021 3.979 12 C 0.062 3.938 13 H 0.101 0.899 14 C -0.181 4.181 15 C 0.514 3.486 16 O -0.526 6.526 17 N -0.602 5.602 18 C 0.082 3.918 19 C 0.247 3.753 20 C -0.524 4.524 21 H 0.057 0.943 22 C 0.061 3.939 23 N -0.896 5.896 24 Si 0.897 3.103 25 H -0.278 1.278 26 H -0.287 1.287 27 H -0.276 1.276 28 C -0.127 4.127 29 C -0.092 4.092 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.401 0.599 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.111 0.889 37 H 0.041 0.959 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.025 0.975 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.044 0.956 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.031 0.969 48 H 0.043 0.957 49 H 0.263 0.737 50 H 0.123 0.877 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.425 -23.750 -2.029 26.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.388 5.388 3 C 0.348 3.652 4 O -0.414 6.414 5 C -0.149 4.149 6 C -0.077 4.077 7 C -0.114 4.114 8 C -0.039 4.039 9 C -0.045 4.045 10 N -0.235 5.235 11 C -0.127 4.127 12 C -0.050 4.050 13 H 0.119 0.881 14 C -0.240 4.240 15 C 0.299 3.701 16 O -0.402 6.402 17 N -0.335 5.335 18 C -0.062 4.062 19 C 0.128 3.872 20 C -0.563 4.563 21 H 0.075 0.925 22 C -0.141 4.141 23 N -0.535 5.535 24 Si 0.725 3.275 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.201 1.201 28 C -0.145 4.145 29 C -0.111 4.111 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.236 0.764 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.129 0.871 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.062 0.938 45 H 0.092 0.908 46 H 0.074 0.926 47 H 0.049 0.951 48 H 0.061 0.939 49 H 0.073 0.927 50 H 0.141 0.859 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.509 -22.038 -2.142 25.431 hybrid contribution 0.472 -0.546 0.574 0.922 sum -12.037 -22.583 -1.568 25.639 Atomic orbital electron populations 1.21541 0.79366 1.02181 1.02512 1.45712 1.07799 1.08700 1.76587 1.18421 0.87511 0.83568 0.75709 1.90778 1.70043 1.31191 1.49365 1.19809 0.92082 0.94776 1.08254 1.21329 0.94038 0.97535 0.94832 1.21296 0.93362 0.99065 0.97692 1.20059 0.95700 0.92892 0.95284 1.21389 0.90234 1.03011 0.89889 1.61771 1.11790 1.34159 1.15763 1.22511 1.01948 0.89547 0.98739 1.21746 0.88072 0.94528 1.00660 0.88102 1.22386 1.02090 0.99346 1.00143 1.20017 0.82412 0.87911 0.79757 1.90601 1.44412 1.62209 1.42984 1.48131 1.12212 1.13969 1.59170 1.21687 0.92056 0.95394 0.97043 1.19262 0.96600 0.74059 0.97247 1.21391 1.42316 0.91630 1.00989 0.92525 1.24928 0.95128 0.97882 0.96163 1.69922 1.44987 1.11693 1.26897 0.86570 0.79245 0.79239 0.82444 1.20317 1.21223 1.20100 1.20975 0.93728 0.97766 1.02041 1.21102 0.94409 0.96395 0.99156 0.92108 0.92120 0.90641 0.76447 0.84710 0.84096 0.87075 0.94079 0.91445 0.90963 0.95667 0.91621 0.91050 0.92002 0.93791 0.90774 0.92563 0.95134 0.93865 0.92704 0.85878 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.70 59.85 0.64 1.23 16 2 N -0.74 -6.02 5.66 -68.04 -0.39 -6.41 16 3 C 0.56 6.90 7.77 -12.33 -0.10 6.80 16 4 O -0.54 -8.68 16.35 5.32 0.09 -8.59 16 5 C -0.15 -1.74 5.87 -104.97 -0.62 -2.36 16 6 C -0.06 -0.80 9.60 -39.18 -0.38 -1.17 16 7 C -0.10 -1.37 9.68 -39.64 -0.38 -1.75 16 8 C -0.04 -0.49 4.88 -104.53 -0.51 -1.00 16 9 C 0.08 1.10 3.61 -4.98 -0.02 1.08 16 10 N -0.51 -7.19 4.46 -237.73 -1.06 -8.25 16 11 C 0.02 0.22 8.84 60.06 0.53 0.75 16 12 C 0.06 0.88 1.93 -68.87 -0.13 0.75 16 13 H 0.10 1.31 6.23 -51.93 -0.32 0.99 16 14 C -0.18 -2.03 8.22 37.16 0.31 -1.72 16 15 C 0.51 10.24 6.81 -10.99 -0.07 10.16 16 16 O -0.53 -12.56 13.89 5.56 0.08 -12.48 16 17 N -0.60 -12.38 2.86 -182.95 -0.52 -12.90 16 18 C 0.08 1.25 9.35 59.85 0.56 1.81 16 19 C 0.25 6.39 5.16 -5.19 -0.03 6.36 16 20 C -0.52 -14.86 9.39 -34.44 -0.32 -15.19 16 21 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 24 Si 0.90 22.12 29.54 -169.99 -5.02 17.09 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 C -0.13 -1.26 8.01 -39.64 -0.32 -1.58 16 29 C -0.09 -0.85 9.54 -39.18 -0.37 -1.22 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.40 2.06 6.86 -40.82 -0.28 1.78 16 34 H 0.14 1.89 7.65 -52.49 -0.40 1.48 16 35 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.11 1.84 5.81 -51.93 -0.30 1.54 16 37 H 0.04 0.47 6.77 -51.93 -0.35 0.11 16 38 H 0.07 0.67 7.95 -51.93 -0.41 0.26 16 39 H 0.07 0.75 6.32 -51.92 -0.33 0.42 16 40 H 0.02 0.22 7.12 -51.93 -0.37 -0.15 16 41 H 0.06 0.79 6.53 -51.93 -0.34 0.45 16 42 H 0.07 0.77 6.45 -51.93 -0.34 0.43 16 43 H 0.06 0.56 7.09 -51.93 -0.37 0.19 16 44 H 0.04 0.56 7.44 -51.93 -0.39 0.18 16 45 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 46 H 0.06 0.69 6.03 -51.93 -0.31 0.38 16 47 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 48 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 50 H 0.12 0.94 8.04 -52.49 -0.42 0.52 16 51 H 0.12 0.68 6.41 -52.49 -0.34 0.34 16 LS Contribution 407.08 15.07 6.13 6.13 Total: -1.00 -36.03 407.08 -8.99 -45.02 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.73 Total: 1.72 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -1.31 Total: 4.59 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -1.23 Total: -53.49 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.16 Total: -21.07 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.03 -8.99 -45.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052687024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.540 kcal (2) G-P(sol) polarization free energy of solvation -36.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds