Wall clock time and date at job start Wed Apr 1 2020 05:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 119.99630 * 2 1 4 4 O 1.21553 * 120.00182 * 359.97438 * 3 2 1 5 5 C 1.47846 * 119.99757 * 180.02562 * 3 2 1 6 6 C 1.39575 * 120.14295 * 179.97438 * 5 3 2 7 7 C 1.37963 * 119.85107 * 180.02562 * 6 5 3 8 8 C 1.38361 * 120.14492 * 0.03126 * 7 6 5 9 9 C 1.50704 * 119.85248 * 179.97438 * 8 7 6 10 10 N 1.46897 * 109.47320 * 89.99595 * 9 8 7 11 11 C 1.46899 * 111.00026 * 66.04539 * 10 9 8 12 12 C 1.46892 * 110.99965 * 189.99964 * 10 9 8 13 13 H 1.09005 * 109.47177 * 192.38490 * 12 10 9 14 14 C 1.52995 * 109.47456 * 312.38443 * 12 10 9 15 15 C 1.50704 * 109.47279 * 72.38959 * 12 10 9 16 16 O 1.21281 * 119.99785 * 343.89654 * 15 12 10 17 17 N 1.34773 * 120.00159 * 163.90855 * 15 12 10 18 18 C 1.46506 * 120.00208 * 359.97438 * 17 15 12 19 19 C 1.46497 * 119.99968 * 179.97438 * 17 15 12 20 20 C 1.50703 * 109.47412 * 89.99503 * 19 17 15 21 21 H 1.08005 * 119.99946 * 359.97438 * 20 19 17 22 22 C 1.37874 * 120.00207 * 180.02562 * 20 19 17 23 23 N 1.31517 * 119.99794 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00027 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47182 * 60.00042 * 24 22 20 26 26 H 1.48507 * 109.47089 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47250 * 299.99824 * 24 22 20 28 28 C 1.38356 * 120.29464 * 0.22397 * 8 7 6 29 29 C 1.37966 * 120.14202 * 359.49244 * 28 8 7 30 30 H 1.09006 * 109.47199 * 299.99729 * 1 2 3 31 31 H 1.08994 * 109.47391 * 59.99847 * 1 2 3 32 32 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 33 33 H 0.96991 * 119.99993 * 180.02562 * 2 1 3 34 34 H 1.07998 * 120.07589 * 0.02562 * 6 5 3 35 35 H 1.07997 * 119.92398 * 179.97438 * 7 6 5 36 36 H 1.08997 * 109.46556 * 329.99513 * 9 8 7 37 37 H 1.08998 * 109.46902 * 209.99447 * 9 8 7 38 38 H 1.09005 * 109.47319 * 177.74985 * 11 10 9 39 39 H 1.09007 * 109.47258 * 297.74099 * 11 10 9 40 40 H 1.08996 * 109.47324 * 57.74236 * 11 10 9 41 41 H 1.09005 * 109.46889 * 59.99871 * 14 12 10 42 42 H 1.08999 * 109.47487 * 179.97438 * 14 12 10 43 43 H 1.09002 * 109.47391 * 300.00633 * 14 12 10 44 44 H 1.08997 * 109.46656 * 90.00561 * 18 17 15 45 45 H 1.08997 * 109.47284 * 210.00889 * 18 17 15 46 46 H 1.09003 * 109.47101 * 330.00925 * 18 17 15 47 47 H 1.09000 * 109.46980 * 209.99526 * 19 17 15 48 48 H 1.09003 * 109.47502 * 329.99506 * 19 17 15 49 49 H 0.97003 * 120.00108 * 179.97438 * 23 22 20 50 50 H 1.07994 * 119.93249 * 179.74842 * 28 8 7 51 51 H 1.07998 * 120.06931 * 180.24710 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5310 2.2199 -0.0005 5 6 3.6173 1.1673 -0.0006 6 6 4.3181 2.3743 -0.0011 7 6 5.6977 2.3673 -0.0022 8 6 6.3865 1.1673 -0.0034 9 6 7.8935 1.1674 -0.0051 10 7 8.3848 1.1670 1.3793 11 6 8.0362 -0.0864 2.0613 12 6 9.8336 1.4052 1.4237 13 1 10.2077 1.1843 2.4235 14 6 10.5309 0.4994 0.4068 15 6 10.1162 2.8472 1.0890 16 8 9.2612 3.5258 0.5604 17 7 11.3191 3.3825 1.3767 18 6 12.3519 2.5629 2.0155 19 6 11.5940 4.7841 1.0508 20 6 11.2080 5.6563 2.2176 21 1 10.7984 5.2111 3.1124 22 6 11.3767 7.0226 2.1425 23 7 11.8749 7.5647 1.0528 24 14 10.8975 8.1037 3.5886 25 1 11.6862 7.7100 4.7837 26 1 11.1763 9.5245 3.2582 27 1 9.4499 7.9361 3.8736 28 6 5.6978 -0.0327 -0.0082 29 6 4.3182 -0.0397 -0.0012 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.9499 -0.8400 -0.0004 34 1 3.7817 3.3117 -0.0007 35 1 6.2412 3.3006 -0.0030 36 1 8.2561 2.0575 -0.5192 37 1 8.2562 0.2775 -0.5196 38 1 8.4461 -0.0768 3.0713 39 1 6.9516 -0.1839 2.1105 40 1 8.4519 -0.9287 1.5084 41 1 10.1568 0.7203 -0.5930 42 1 11.6059 0.6765 0.4394 43 1 10.3265 -0.5435 0.6489 44 1 12.9553 2.0766 1.2490 45 1 12.9893 3.1969 2.6318 46 1 11.8794 1.8054 2.6408 47 1 12.6566 4.9067 0.8414 48 1 11.0150 5.0735 0.1737 49 1 11.9932 8.5260 0.9998 50 1 6.2413 -0.9658 -0.0132 51 1 3.7819 -0.9771 -0.0009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052687024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:25 Heat of formation + Delta-G solvation = -52.542344 kcal Electronic energy + Delta-G solvation = -30646.927253 eV Core-core repulsion = 26545.802066 eV Total energy + Delta-G solvation = -4101.125187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.43019 -40.99685 -39.65269 -37.97131 -36.46564 -35.78994 -34.77960 -33.37303 -32.03274 -31.38244 -29.53295 -28.89393 -27.40096 -27.21274 -26.36330 -25.13538 -23.70165 -23.40831 -22.10778 -21.27832 -19.74763 -19.24346 -18.69273 -18.04200 -17.34988 -17.25923 -16.83858 -16.46617 -16.30291 -16.02751 -15.94892 -15.81199 -15.56401 -15.13847 -14.98037 -14.50316 -14.44773 -14.29305 -14.10300 -14.09166 -13.81514 -13.54612 -13.40900 -13.26348 -13.17759 -13.11321 -12.92702 -12.86803 -12.60008 -12.54487 -12.50107 -12.37063 -12.18143 -12.10742 -11.87093 -11.69914 -11.15606 -10.64446 -10.40018 -10.27263 -9.95515 -9.75767 -9.36681 -9.09785 -8.22298 -6.36607 -0.21340 0.40405 1.34331 1.39273 1.46060 1.74705 1.93233 2.17930 2.30796 2.42641 2.77877 3.06833 3.24542 3.63739 3.73690 3.80769 3.90547 3.98285 4.05081 4.09765 4.29090 4.40485 4.43712 4.47740 4.51950 4.59027 4.60735 4.66662 4.68494 4.76446 4.81426 4.86019 4.93480 4.96689 4.97711 5.03375 5.05867 5.11404 5.21685 5.23756 5.24847 5.34751 5.37972 5.57558 5.65573 5.86717 5.88787 6.03308 6.07828 6.22157 6.47490 6.71714 6.87434 7.14584 7.29919 7.59401 8.84033 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.002496 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.105986 B =11215.720304 C =12990.131917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.714 5.714 3 C 0.554 3.446 4 O -0.588 6.588 5 C -0.153 4.153 6 C -0.078 4.078 7 C -0.121 4.121 8 C -0.045 4.045 9 C 0.089 3.911 10 N -0.543 5.543 11 C 0.022 3.978 12 C 0.077 3.923 13 H 0.122 0.878 14 C -0.173 4.173 15 C 0.499 3.501 16 O -0.580 6.580 17 N -0.612 5.612 18 C 0.078 3.922 19 C 0.263 3.737 20 C -0.539 4.539 21 H 0.050 0.950 22 C 0.007 3.993 23 N -0.928 5.928 24 Si 0.964 3.036 25 H -0.258 1.258 26 H -0.278 1.278 27 H -0.281 1.281 28 C -0.112 4.112 29 C -0.070 4.070 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.119 0.881 33 H 0.419 0.581 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.092 0.908 47 H 0.022 0.978 48 H -0.005 1.005 49 H 0.266 0.734 50 H 0.164 0.836 51 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.604 -29.121 -0.473 31.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.366 5.366 3 C 0.343 3.657 4 O -0.469 6.469 5 C -0.156 4.156 6 C -0.097 4.097 7 C -0.140 4.140 8 C -0.046 4.046 9 C -0.037 4.037 10 N -0.267 5.267 11 C -0.125 4.125 12 C -0.035 4.035 13 H 0.140 0.860 14 C -0.231 4.231 15 C 0.287 3.713 16 O -0.460 6.460 17 N -0.344 5.344 18 C -0.064 4.064 19 C 0.141 3.859 20 C -0.578 4.578 21 H 0.068 0.932 22 C -0.192 4.192 23 N -0.568 5.568 24 Si 0.788 3.212 25 H -0.183 1.183 26 H -0.203 1.203 27 H -0.207 1.207 28 C -0.130 4.130 29 C -0.088 4.088 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.137 0.863 33 H 0.258 0.742 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.111 0.889 47 H 0.040 0.960 48 H 0.013 0.987 49 H 0.075 0.925 50 H 0.182 0.818 51 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.660 -27.510 -0.564 30.289 hybrid contribution 0.485 1.075 0.046 1.180 sum -12.175 -26.436 -0.518 29.109 Atomic orbital electron populations 1.21738 0.78168 1.04694 1.01493 1.45595 1.08589 1.08116 1.74338 1.18568 0.87676 0.84049 0.75451 1.90755 1.70887 1.33259 1.52045 1.19896 0.92203 0.95082 1.08463 1.21186 0.93794 0.98094 0.96633 1.21034 0.93633 0.98769 1.00548 1.20118 0.95518 0.93300 0.95682 1.21197 0.90548 1.02134 0.89855 1.61638 1.11611 1.37082 1.16327 1.22578 1.02367 0.88516 0.99052 1.21638 0.89122 0.90251 1.02471 0.86014 1.22355 1.01981 1.00422 0.98368 1.21287 0.81208 0.90438 0.78356 1.90593 1.46030 1.64253 1.45107 1.48154 1.14111 1.12397 1.59719 1.21978 0.91164 0.95248 0.98039 1.18677 0.94870 0.77534 0.94820 1.21669 1.42238 0.92511 1.01345 0.93153 1.25835 0.94989 0.99388 0.98990 1.70040 1.45859 1.12121 1.28797 0.85525 0.78502 0.77579 0.79556 1.18280 1.20285 1.20725 1.21323 0.94041 0.97736 0.99912 1.21571 0.94317 0.96925 0.95972 0.93241 0.93162 0.86277 0.74226 0.86936 0.88091 0.91606 0.91097 0.90726 0.90741 0.92611 0.92894 0.90339 0.88232 0.90915 0.91838 0.88927 0.95960 0.98656 0.92469 0.81812 0.81171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.70 127.77 1.37 2.28 16 2 N -0.71 -9.76 5.66 -487.47 -2.76 -12.52 16 3 C 0.55 13.42 7.77 86.79 0.67 14.10 16 4 O -0.59 -19.98 16.35 -3.88 -0.06 -20.04 16 5 C -0.15 -3.57 5.87 -20.09 -0.12 -3.69 16 6 C -0.08 -2.34 9.60 22.53 0.22 -2.13 16 7 C -0.12 -3.84 9.68 22.23 0.22 -3.63 16 8 C -0.05 -1.14 4.88 -19.81 -0.10 -1.24 16 9 C 0.09 2.37 3.61 85.56 0.31 2.68 16 10 N -0.54 -14.42 4.46 -906.05 -4.04 -18.46 16 11 C 0.02 0.36 8.84 127.69 1.13 1.49 16 12 C 0.08 2.05 1.93 44.17 0.09 2.14 16 13 H 0.12 2.72 6.23 -2.38 -0.01 2.71 16 14 C -0.17 -3.29 8.22 71.98 0.59 -2.69 16 15 C 0.50 20.55 6.81 87.66 0.60 21.15 16 16 O -0.58 -30.09 13.89 -3.03 -0.04 -30.13 16 17 N -0.61 -25.81 2.86 -851.12 -2.43 -28.24 16 18 C 0.08 2.24 9.35 127.77 1.19 3.43 16 19 C 0.26 14.40 5.16 85.63 0.44 14.84 16 20 C -0.54 -31.85 9.39 25.60 0.24 -31.61 16 21 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 22 C 0.01 0.40 5.46 84.65 0.46 0.87 16 23 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 24 Si 0.96 46.43 29.54 68.60 2.03 48.45 16 25 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 28 C -0.11 -1.80 8.01 22.23 0.18 -1.62 16 29 C -0.07 -1.02 9.54 22.53 0.21 -0.81 16 30 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.12 0.29 8.14 -2.38 -0.02 0.27 16 33 H 0.42 2.33 6.86 -92.71 -0.64 1.70 16 34 H 0.11 3.72 7.65 -2.91 -0.02 3.70 16 35 H 0.10 3.89 8.06 -2.91 -0.02 3.87 16 36 H 0.07 2.37 5.81 -2.39 -0.01 2.35 16 37 H 0.07 1.40 6.77 -2.39 -0.02 1.38 16 38 H 0.07 1.15 7.95 -2.38 -0.02 1.13 16 39 H 0.07 1.22 6.32 -2.38 -0.02 1.20 16 40 H 0.06 0.61 7.12 -2.39 -0.02 0.59 16 41 H 0.05 1.16 6.53 -2.38 -0.02 1.15 16 42 H 0.08 1.40 6.45 -2.39 -0.02 1.38 16 43 H 0.10 1.20 7.09 -2.39 -0.02 1.18 16 44 H 0.07 1.68 7.44 -2.39 -0.02 1.66 16 45 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 46 H 0.09 1.98 6.03 -2.39 -0.01 1.96 16 47 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 48 H 0.00 -0.30 7.42 -2.39 -0.02 -0.32 16 49 H 0.27 15.52 8.31 -92.71 -0.77 14.74 16 50 H 0.16 1.40 8.04 -2.91 -0.02 1.37 16 51 H 0.17 0.78 6.41 -2.91 -0.02 0.77 16 Total: -1.00 -89.44 407.08 0.99 -88.45 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.31 Total: 14.12 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 7.70 Total: 15.54 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -8.95 Total: -116.40 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -0.11 Total: -50.17 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -89.44 0.99 -88.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052687024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.906 kcal (2) G-P(sol) polarization free energy of solvation -89.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds