Wall clock time and date at job start Wed Apr 1 2020 04:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47097 * 2 1 4 4 C 1.53004 * 109.47030 * 240.00094 * 2 1 3 5 5 N 1.46496 * 109.46777 * 180.02562 * 4 2 1 6 6 C 1.34781 * 119.99791 * 180.02562 * 5 4 2 7 7 O 1.21580 * 120.00164 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99670 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99427 * 180.02562 * 8 6 5 10 10 C 1.53041 * 109.45682 * 275.01927 * 9 8 6 11 11 C 1.53197 * 109.31036 * 178.60545 * 10 9 8 12 12 N 1.46923 * 108.76604 * 54.65690 * 11 10 9 13 13 C 1.36942 * 120.62700 * 126.40507 * 12 11 10 14 14 H 1.07993 * 120.00287 * 333.07913 * 13 12 11 15 15 C 1.38819 * 119.99471 * 153.08045 * 13 12 11 16 16 N 1.31620 * 120.00087 * 343.83245 * 15 13 12 17 17 Si 1.86801 * 119.99707 * 163.83764 * 15 13 12 18 18 H 1.48502 * 109.46973 * 89.99856 * 17 15 13 19 19 H 1.48495 * 109.46980 * 209.99726 * 17 15 13 20 20 H 1.48495 * 109.47122 * 329.99815 * 17 15 13 21 21 C 1.46924 * 118.73854 * 306.38061 * 12 11 10 22 22 C 1.53045 * 109.46055 * 154.96890 * 9 8 6 23 23 O 1.42893 * 109.46861 * 120.00247 * 2 1 3 24 24 C 1.35905 * 117.00397 * 274.53988 * 23 2 1 25 25 C 1.38734 * 120.05143 * 4.85634 * 24 23 2 26 26 C 1.38147 * 119.94318 * 179.74768 * 25 24 23 27 27 C 1.38263 * 120.05308 * 0.50443 * 26 25 24 28 28 C 1.38264 * 120.11272 * 359.76393 * 27 26 25 29 29 C 1.38143 * 120.05738 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47333 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47292 * 300.00395 * 1 2 3 32 32 H 1.09009 * 109.46591 * 59.99575 * 1 2 3 33 33 H 1.08999 * 109.46647 * 300.00142 * 4 2 1 34 34 H 1.08993 * 109.46911 * 60.00315 * 4 2 1 35 35 H 0.97002 * 120.00155 * 0.02562 * 5 4 2 36 36 H 0.96992 * 120.00238 * 359.97438 * 8 6 5 37 37 H 1.08995 * 109.46672 * 34.99738 * 9 8 6 38 38 H 1.08999 * 109.49894 * 298.57003 * 10 9 8 39 39 H 1.09002 * 109.49788 * 58.66674 * 10 9 8 40 40 H 1.09000 * 109.59845 * 294.86546 * 11 10 9 41 41 H 1.09000 * 109.70114 * 174.51116 * 11 10 9 42 42 H 0.96999 * 119.99700 * 180.02562 * 16 15 13 43 43 H 1.08991 * 109.58634 * 293.82222 * 21 12 11 44 44 H 1.08998 * 109.70164 * 173.46423 * 21 12 11 45 45 H 1.08996 * 109.49369 * 301.33495 * 22 9 8 46 46 H 1.09005 * 109.49620 * 61.42888 * 22 9 8 47 47 H 1.08006 * 120.02664 * 359.97438 * 25 24 23 48 48 H 1.07999 * 119.97186 * 180.23004 * 26 25 24 49 49 H 1.08005 * 119.93755 * 179.75133 * 27 26 25 50 50 H 1.07997 * 119.96820 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.02829 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5050 -0.7218 -1.2489 6 6 4.1789 -1.3050 -2.2600 7 8 3.5711 -1.8311 -3.1721 8 7 5.5267 -1.3059 -2.2594 9 6 6.2591 -1.9394 -3.3587 10 6 6.4035 -3.4370 -3.0788 11 6 7.1392 -4.1020 -4.2465 12 7 8.4135 -3.4031 -4.4618 13 6 9.5941 -4.0965 -4.4863 14 1 9.6855 -5.0264 -3.9449 15 6 10.6733 -3.6040 -5.2072 16 7 10.4879 -2.6652 -6.1108 17 14 12.3889 -4.2739 -4.8947 18 1 12.6384 -5.4326 -5.7894 19 1 13.3917 -3.2131 -5.1674 20 1 12.5004 -4.7084 -3.4792 21 6 8.3969 -1.9461 -4.6509 22 6 7.6469 -1.3054 -3.4788 23 8 2.0063 -0.6737 1.1667 24 6 2.1216 0.0648 2.3018 25 6 1.6891 1.3829 2.3201 26 6 1.8026 2.1298 3.4766 27 6 2.3562 1.5681 4.6122 28 6 2.7931 0.2564 4.5949 29 6 2.6769 -0.4965 3.4425 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5140 -0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.9900 -0.3023 -0.5210 36 1 6.0116 -0.8865 -1.5316 37 1 5.7122 -1.7951 -4.2903 38 1 6.9721 -3.5824 -2.1603 39 1 5.4152 -3.8837 -2.9700 40 1 6.5295 -4.0363 -5.1477 41 1 7.3317 -5.1487 -4.0112 42 1 11.2420 -2.3214 -6.6148 43 1 7.8899 -1.7047 -5.5850 44 1 9.4187 -1.5679 -4.6813 45 1 7.5436 -0.2347 -3.6547 46 1 8.2037 -1.4710 -2.5565 47 1 1.2607 1.8235 1.4319 48 1 1.4627 3.1548 3.4924 49 1 2.4477 2.1550 5.5142 50 1 3.2255 -0.1800 5.4832 51 1 3.0186 -1.5209 3.4294 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073059854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:10 Heat of formation + Delta-G solvation = -22.667146 kcal Electronic energy + Delta-G solvation = -30094.793232 eV Core-core repulsion = 25994.963531 eV Total energy + Delta-G solvation = -4099.829701 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.78379 -39.84621 -38.14512 -37.38833 -35.03350 -34.28145 -32.65791 -31.85101 -31.19546 -30.06002 -30.01740 -29.28210 -26.57361 -24.77514 -23.76571 -22.83434 -22.23715 -21.91770 -21.25852 -20.50823 -19.38030 -18.83524 -18.10211 -16.98909 -16.57208 -16.34108 -16.04260 -15.52543 -15.35335 -14.96490 -14.82085 -14.55490 -14.20566 -13.89939 -13.81376 -13.70159 -13.49720 -13.24159 -13.07642 -12.95512 -12.85678 -12.62898 -12.46177 -12.28299 -11.96139 -11.62483 -11.42260 -11.41171 -11.07306 -11.03924 -10.81871 -10.68297 -10.46233 -10.23367 -10.01597 -9.98260 -9.70958 -9.51089 -9.40428 -9.17336 -8.59118 -8.56657 -8.40062 -6.66421 -5.76508 -3.17985 0.93294 1.05248 2.68043 2.81135 3.38946 3.39713 3.40992 3.45736 3.48119 4.16536 4.29316 4.39402 4.45967 4.51711 4.54429 4.61269 4.74522 4.96652 4.98979 5.14830 5.17657 5.22305 5.37572 5.42249 5.45814 5.51954 5.55184 5.60958 5.64945 5.66498 5.92197 5.94890 6.01103 6.13358 6.14467 6.33705 6.36397 6.40057 6.41171 6.54488 6.62673 6.66056 6.84612 6.94027 7.03135 7.03547 7.14842 7.37274 7.67908 7.81178 8.17579 8.47127 8.78615 9.23710 9.87170 10.43538 11.32186 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016710 B = 0.001891 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.196679 B =14805.106789 C =15774.936253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 H 0.081 0.919 4 C 0.147 3.853 5 N -0.750 5.750 6 C 0.703 3.297 7 O -0.592 6.592 8 N -0.739 5.739 9 C 0.169 3.831 10 C -0.139 4.139 11 C 0.147 3.853 12 N -0.593 5.593 13 C -0.248 4.248 14 H 0.066 0.934 15 C -0.001 4.001 16 N -0.905 5.905 17 Si 0.903 3.097 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.173 3.827 22 C -0.146 4.146 23 O -0.305 6.305 24 C 0.132 3.868 25 C -0.212 4.212 26 C -0.081 4.081 27 C -0.161 4.161 28 C -0.080 4.080 29 C -0.152 4.152 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.395 0.605 36 H 0.391 0.609 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.055 0.945 42 H 0.253 0.747 43 H 0.020 0.980 44 H 0.096 0.904 45 H 0.053 0.947 46 H 0.059 0.941 47 H 0.129 0.871 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.128 0.872 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.930 11.586 20.048 30.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.014 3.986 3 H 0.098 0.902 4 C 0.022 3.978 5 N -0.407 5.407 6 C 0.403 3.597 7 O -0.470 6.470 8 N -0.392 5.392 9 C 0.065 3.935 10 C -0.180 4.180 11 C 0.020 3.980 12 N -0.316 5.316 13 C -0.378 4.378 14 H 0.084 0.916 15 C -0.199 4.199 16 N -0.550 5.550 17 Si 0.733 3.267 18 H -0.214 1.214 19 H -0.216 1.216 20 H -0.206 1.206 21 C 0.046 3.954 22 C -0.186 4.186 23 O -0.218 6.218 24 C 0.086 3.914 25 C -0.231 4.231 26 C -0.099 4.099 27 C -0.179 4.179 28 C -0.098 4.098 29 C -0.171 4.171 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.229 0.771 36 H 0.224 0.776 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.114 0.886 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.147 0.853 48 H 0.141 0.859 49 H 0.140 0.860 50 H 0.146 0.854 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.319 10.940 19.010 29.898 hybrid contribution 1.207 0.358 0.837 1.512 sum -19.112 11.297 19.847 29.779 Atomic orbital electron populations 1.22298 0.93704 1.04134 1.03381 1.22768 0.95194 0.96949 0.83666 0.90159 1.21247 0.79765 1.01926 0.94879 1.45000 1.06472 1.63319 1.25901 1.15979 0.82208 0.79222 0.82316 1.90919 1.67934 1.50947 1.37165 1.45540 1.04117 1.61888 1.27627 1.20913 0.91898 0.92240 0.88430 1.22390 0.99720 0.95240 1.00621 1.20878 0.87744 0.95320 0.94008 1.44112 1.01348 1.02170 1.83987 1.19206 0.88693 1.06029 1.23860 0.91620 1.25035 0.99091 0.99643 0.96159 1.70010 1.29847 1.31472 1.23698 0.86285 0.84430 0.78027 0.77966 1.21433 1.21601 1.20557 1.20790 1.00277 0.83106 0.91206 1.22550 0.94512 0.98787 1.02766 1.86202 1.80952 1.38013 1.16669 1.19049 0.95175 0.90211 0.86921 1.21325 1.07299 0.94291 1.00167 1.20966 0.97148 0.99445 0.92345 1.21085 1.02210 0.95847 0.98778 1.21004 0.97638 0.93971 0.97228 1.20513 1.03824 1.01397 0.91376 0.90794 0.91352 0.90361 0.90517 0.89599 0.77135 0.77639 0.90100 0.92472 0.92704 0.96167 0.92623 0.93641 0.96178 0.88627 0.92821 0.92265 0.85295 0.85876 0.85975 0.85375 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 9.19 37.16 0.34 -0.66 16 2 C 0.07 0.51 2.31 -26.73 -0.06 0.45 16 3 H 0.08 0.49 6.25 -51.93 -0.32 0.17 16 4 C 0.15 1.40 5.37 -4.04 -0.02 1.38 16 5 N -0.75 -8.41 5.45 -65.23 -0.36 -8.76 16 6 C 0.70 10.84 8.53 -86.91 -0.74 10.10 16 7 O -0.59 -11.58 16.01 5.30 0.08 -11.49 16 8 N -0.74 -10.88 5.08 -58.63 -0.30 -11.18 16 9 C 0.17 3.05 2.42 -67.89 -0.16 2.89 16 10 C -0.14 -2.66 5.65 -26.61 -0.15 -2.81 16 11 C 0.15 3.25 6.52 -3.71 -0.02 3.23 16 12 N -0.59 -15.04 3.00 -172.32 -0.52 -15.56 16 13 C -0.25 -6.85 9.60 -15.05 -0.14 -6.99 16 14 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 15 C 0.00 -0.04 4.95 -17.43 -0.09 -0.12 16 16 N -0.91 -26.25 11.05 55.49 0.61 -25.64 16 17 Si 0.90 21.71 29.58 -169.99 -5.03 16.68 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.17 4.11 5.31 -3.71 -0.02 4.09 16 22 C -0.15 -2.73 5.55 -26.61 -0.15 -2.88 16 23 O -0.30 -2.79 9.54 -19.44 -0.19 -2.97 16 24 C 0.13 1.14 6.61 -39.22 -0.26 0.88 16 25 C -0.21 -1.55 8.28 -39.43 -0.33 -1.88 16 26 C -0.08 -0.54 10.04 -39.61 -0.40 -0.93 16 27 C -0.16 -1.06 10.04 -39.56 -0.40 -1.46 16 28 C -0.08 -0.56 10.04 -39.61 -0.40 -0.96 16 29 C -0.15 -1.27 9.99 -39.44 -0.39 -1.67 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.37 7.01 -51.93 -0.36 0.00 16 32 H 0.08 0.34 8.14 -51.92 -0.42 -0.09 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.40 3.63 8.36 -40.82 -0.34 3.29 16 36 H 0.39 4.68 8.62 -40.82 -0.35 4.33 16 37 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.10 2.52 5.93 -51.93 -0.31 2.21 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.13 0.74 5.47 -52.48 -0.29 0.46 16 48 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 49 H 0.12 0.57 8.06 -52.48 -0.42 0.15 16 50 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 51 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 408.41 15.07 6.15 6.15 Total: -1.00 -33.23 408.41 -11.17 -44.41 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -8.25 Total: 5.70 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -3.39 Total: 2.67 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.56 Total: -61.14 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.10 Total: -14.47 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.23 -11.17 -44.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073059854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.739 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds