Wall clock time and date at job start Wed Apr 1 2020 04:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47097 * 2 1 4 4 C 1.53004 * 109.47030 * 240.00094 * 2 1 3 5 5 N 1.46496 * 109.46777 * 180.02562 * 4 2 1 6 6 C 1.34781 * 119.99791 * 180.02562 * 5 4 2 7 7 O 1.21580 * 120.00164 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99670 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99427 * 180.02562 * 8 6 5 10 10 C 1.53041 * 109.45682 * 275.01927 * 9 8 6 11 11 C 1.53197 * 109.31036 * 178.60545 * 10 9 8 12 12 N 1.46923 * 108.76604 * 54.65690 * 11 10 9 13 13 C 1.36942 * 120.62700 * 126.40507 * 12 11 10 14 14 H 1.07993 * 120.00287 * 333.07913 * 13 12 11 15 15 C 1.38819 * 119.99471 * 153.08045 * 13 12 11 16 16 N 1.31620 * 120.00087 * 343.83245 * 15 13 12 17 17 Si 1.86801 * 119.99707 * 163.83764 * 15 13 12 18 18 H 1.48502 * 109.46973 * 89.99856 * 17 15 13 19 19 H 1.48495 * 109.46980 * 209.99726 * 17 15 13 20 20 H 1.48495 * 109.47122 * 329.99815 * 17 15 13 21 21 C 1.46924 * 118.73854 * 306.38061 * 12 11 10 22 22 C 1.53045 * 109.46055 * 154.96890 * 9 8 6 23 23 O 1.42893 * 109.46861 * 120.00247 * 2 1 3 24 24 C 1.35905 * 117.00397 * 274.53988 * 23 2 1 25 25 C 1.38734 * 120.05143 * 4.85634 * 24 23 2 26 26 C 1.38147 * 119.94318 * 179.74768 * 25 24 23 27 27 C 1.38263 * 120.05308 * 0.50443 * 26 25 24 28 28 C 1.38264 * 120.11272 * 359.76393 * 27 26 25 29 29 C 1.38143 * 120.05738 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47333 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47292 * 300.00395 * 1 2 3 32 32 H 1.09009 * 109.46591 * 59.99575 * 1 2 3 33 33 H 1.08999 * 109.46647 * 300.00142 * 4 2 1 34 34 H 1.08993 * 109.46911 * 60.00315 * 4 2 1 35 35 H 0.97002 * 120.00155 * 0.02562 * 5 4 2 36 36 H 0.96992 * 120.00238 * 359.97438 * 8 6 5 37 37 H 1.08995 * 109.46672 * 34.99738 * 9 8 6 38 38 H 1.08999 * 109.49894 * 298.57003 * 10 9 8 39 39 H 1.09002 * 109.49788 * 58.66674 * 10 9 8 40 40 H 1.09000 * 109.59845 * 294.86546 * 11 10 9 41 41 H 1.09000 * 109.70114 * 174.51116 * 11 10 9 42 42 H 0.96999 * 119.99700 * 180.02562 * 16 15 13 43 43 H 1.08991 * 109.58634 * 293.82222 * 21 12 11 44 44 H 1.08998 * 109.70164 * 173.46423 * 21 12 11 45 45 H 1.08996 * 109.49369 * 301.33495 * 22 9 8 46 46 H 1.09005 * 109.49620 * 61.42888 * 22 9 8 47 47 H 1.08006 * 120.02664 * 359.97438 * 25 24 23 48 48 H 1.07999 * 119.97186 * 180.23004 * 26 25 24 49 49 H 1.08005 * 119.93755 * 179.75133 * 27 26 25 50 50 H 1.07997 * 119.96820 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.02829 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5050 -0.7218 -1.2489 6 6 4.1789 -1.3050 -2.2600 7 8 3.5711 -1.8311 -3.1721 8 7 5.5267 -1.3059 -2.2594 9 6 6.2591 -1.9394 -3.3587 10 6 6.4035 -3.4370 -3.0788 11 6 7.1392 -4.1020 -4.2465 12 7 8.4135 -3.4031 -4.4618 13 6 9.5941 -4.0965 -4.4863 14 1 9.6855 -5.0264 -3.9449 15 6 10.6733 -3.6040 -5.2072 16 7 10.4879 -2.6652 -6.1108 17 14 12.3889 -4.2739 -4.8947 18 1 12.6384 -5.4326 -5.7894 19 1 13.3917 -3.2131 -5.1674 20 1 12.5004 -4.7084 -3.4792 21 6 8.3969 -1.9461 -4.6509 22 6 7.6469 -1.3054 -3.4788 23 8 2.0063 -0.6737 1.1667 24 6 2.1216 0.0648 2.3018 25 6 1.6891 1.3829 2.3201 26 6 1.8026 2.1298 3.4766 27 6 2.3562 1.5681 4.6122 28 6 2.7931 0.2564 4.5949 29 6 2.6769 -0.4965 3.4425 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5140 -0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.9900 -0.3023 -0.5210 36 1 6.0116 -0.8865 -1.5316 37 1 5.7122 -1.7951 -4.2903 38 1 6.9721 -3.5824 -2.1603 39 1 5.4152 -3.8837 -2.9700 40 1 6.5295 -4.0363 -5.1477 41 1 7.3317 -5.1487 -4.0112 42 1 11.2420 -2.3214 -6.6148 43 1 7.8899 -1.7047 -5.5850 44 1 9.4187 -1.5679 -4.6813 45 1 7.5436 -0.2347 -3.6547 46 1 8.2037 -1.4710 -2.5565 47 1 1.2607 1.8235 1.4319 48 1 1.4627 3.1548 3.4924 49 1 2.4477 2.1550 5.5142 50 1 3.2255 -0.1800 5.4832 51 1 3.0186 -1.5209 3.4294 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073059854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:09 Heat of formation + Delta-G solvation = -43.671207 kcal Electronic energy + Delta-G solvation = -30095.704037 eV Core-core repulsion = 25994.963531 eV Total energy + Delta-G solvation = -4100.740506 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.48378 -40.97581 -39.18931 -38.55866 -36.18536 -35.73548 -34.00884 -33.07027 -31.83985 -31.65612 -30.99945 -30.54218 -27.60339 -26.47471 -24.35081 -23.95127 -23.62446 -23.31554 -21.94111 -21.71427 -21.04044 -19.45892 -19.31904 -18.64177 -17.70090 -17.09919 -16.83181 -16.63519 -16.48994 -16.22535 -15.77158 -15.66144 -15.41245 -15.33580 -15.14138 -14.78468 -14.61054 -14.39713 -14.30731 -14.04433 -13.86643 -13.56685 -13.45720 -13.20972 -13.07199 -12.98378 -12.60228 -12.51422 -12.43449 -12.23073 -12.17553 -12.01267 -11.97035 -11.85894 -11.58288 -11.54918 -11.40132 -11.21493 -10.55273 -10.33669 -9.91615 -9.75337 -9.13812 -8.71423 -7.86606 -5.31788 0.42306 0.52217 1.48728 1.49709 1.59921 1.67063 2.12199 2.19444 2.52583 2.87928 3.22888 3.31813 3.56440 3.67124 3.84514 3.91005 3.95159 4.03380 4.07020 4.07379 4.30994 4.35047 4.41905 4.46736 4.52734 4.56245 4.64558 4.65564 4.70208 4.81426 4.83299 4.87175 4.90239 5.02460 5.06762 5.11799 5.16366 5.19707 5.29857 5.40004 5.43808 5.49166 5.52094 5.60448 5.64640 5.64677 5.72565 5.89205 6.00038 6.39622 6.48133 7.09307 7.15099 7.59391 7.84726 8.37073 9.20303 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016710 B = 0.001891 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.196679 B =14805.106789 C =15774.936253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.077 3.923 3 H 0.097 0.903 4 C 0.144 3.856 5 N -0.732 5.732 6 C 0.701 3.299 7 O -0.635 6.635 8 N -0.727 5.727 9 C 0.182 3.818 10 C -0.124 4.124 11 C 0.145 3.855 12 N -0.609 5.609 13 C -0.261 4.261 14 H 0.068 0.932 15 C -0.053 4.053 16 N -0.936 5.936 17 Si 0.970 3.030 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.270 1.270 21 C 0.177 3.823 22 C -0.127 4.127 23 O -0.323 6.323 24 C 0.115 3.885 25 C -0.216 4.216 26 C -0.086 4.086 27 C -0.166 4.166 28 C -0.086 4.086 29 C -0.173 4.173 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.408 0.592 36 H 0.408 0.592 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.008 0.992 41 H 0.057 0.943 42 H 0.251 0.749 43 H -0.005 1.005 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.144 0.856 48 H 0.145 0.855 49 H 0.142 0.858 50 H 0.145 0.855 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.443 12.993 22.456 33.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.021 3.979 3 H 0.115 0.885 4 C 0.020 3.980 5 N -0.389 5.389 6 C 0.401 3.599 7 O -0.516 6.516 8 N -0.381 5.381 9 C 0.076 3.924 10 C -0.164 4.164 11 C 0.019 3.981 12 N -0.333 5.333 13 C -0.391 4.391 14 H 0.085 0.915 15 C -0.248 4.248 16 N -0.583 5.583 17 Si 0.798 3.202 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.195 1.195 21 C 0.050 3.950 22 C -0.167 4.167 23 O -0.237 6.237 24 C 0.070 3.930 25 C -0.235 4.235 26 C -0.104 4.104 27 C -0.184 4.184 28 C -0.104 4.104 29 C -0.192 4.192 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.244 0.756 36 H 0.244 0.756 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.026 0.974 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.013 0.987 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.161 0.839 48 H 0.163 0.837 49 H 0.160 0.840 50 H 0.162 0.838 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.857 12.374 21.492 32.405 hybrid contribution 1.288 -0.085 0.104 1.295 sum -19.569 12.289 21.597 31.629 Atomic orbital electron populations 1.22285 0.92445 1.03955 1.04460 1.22758 0.96012 0.97003 0.82100 0.88546 1.21377 0.78507 1.01521 0.96603 1.44862 1.07197 1.61910 1.24893 1.16110 0.82151 0.79126 0.82554 1.90897 1.68765 1.52884 1.39085 1.45144 1.04048 1.61697 1.27257 1.20495 0.91480 0.91776 0.88622 1.22186 0.99248 0.95706 0.99283 1.20960 0.86734 0.95674 0.94760 1.44363 1.01846 1.02908 1.84170 1.19530 0.89746 1.06286 1.23588 0.91473 1.25810 1.02626 1.00261 0.96067 1.70173 1.30579 1.32827 1.24672 0.85236 0.79725 0.77112 0.78108 1.21395 1.21693 1.19455 1.20619 0.99119 0.82885 0.92354 1.22261 0.94121 0.99617 1.00705 1.86166 1.81410 1.38887 1.17256 1.19214 0.96100 0.90904 0.86796 1.21523 1.07091 0.93790 1.01084 1.21307 0.96624 1.00450 0.92045 1.21411 1.01548 0.95823 0.99644 1.21266 0.97483 0.94302 0.97381 1.20679 1.04721 1.01628 0.92132 0.91657 0.90749 0.88736 0.92138 0.89035 0.75626 0.75585 0.92495 0.91750 0.92510 0.97410 0.92431 0.94003 0.98732 0.91328 0.90484 0.91272 0.83887 0.83736 0.84020 0.83752 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 9.19 71.98 0.66 -1.01 16 2 C 0.08 0.98 2.31 30.60 0.07 1.05 16 3 H 0.10 0.92 6.25 -2.39 -0.01 0.91 16 4 C 0.14 2.59 5.37 86.38 0.46 3.05 16 5 N -0.73 -15.26 5.45 -478.55 -2.61 -17.87 16 6 C 0.70 20.81 8.53 179.05 1.53 22.34 16 7 O -0.63 -24.74 16.01 -3.97 -0.06 -24.80 16 8 N -0.73 -20.16 5.08 -457.68 -2.33 -22.49 16 9 C 0.18 6.41 2.42 45.02 0.11 6.52 16 10 C -0.12 -4.64 5.65 30.67 0.17 -4.47 16 11 C 0.14 6.47 6.52 86.36 0.56 7.03 16 12 N -0.61 -31.31 3.00 -699.11 -2.10 -33.41 16 13 C -0.26 -14.52 9.60 84.03 0.81 -13.71 16 14 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 15 C -0.05 -2.95 4.95 84.86 0.42 -2.53 16 16 N -0.94 -55.43 11.05 21.65 0.24 -55.19 16 17 Si 0.97 44.84 29.58 68.60 2.03 46.87 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 C 0.18 8.56 5.31 86.36 0.46 9.02 16 22 C -0.13 -4.63 5.55 30.67 0.17 -4.46 16 23 O -0.32 -5.56 9.54 -92.48 -0.88 -6.44 16 24 C 0.11 1.85 6.61 22.51 0.15 2.00 16 25 C -0.22 -2.70 8.28 22.37 0.19 -2.51 16 26 C -0.09 -0.93 10.04 22.25 0.22 -0.71 16 27 C -0.17 -1.81 10.04 22.28 0.22 -1.59 16 28 C -0.09 -1.08 10.04 22.25 0.22 -0.86 16 29 C -0.17 -2.76 9.99 22.36 0.22 -2.53 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.65 7.01 -2.39 -0.02 0.63 16 32 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.41 6.60 8.36 -92.71 -0.78 5.82 16 36 H 0.41 8.66 8.62 -92.71 -0.80 7.86 16 37 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 38 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 42 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 43 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 44 H 0.07 3.70 5.93 -2.39 -0.01 3.69 16 45 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 47 H 0.14 1.26 5.47 -2.91 -0.02 1.24 16 48 H 0.14 0.86 8.06 -2.91 -0.02 0.84 16 49 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 50 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 51 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -72.90 408.41 0.31 -72.59 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -0.63 Total: 24.09 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 6.65 Total: 16.64 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -6.79 Total: -128.96 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.95 Total: -31.24 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -72.90 0.31 -72.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073059854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.918 kcal (2) G-P(sol) polarization free energy of solvation -72.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds