Wall clock time and date at job start Wed Apr 1 2020 04:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47046 * 2 1 4 4 C 1.50692 * 109.47157 * 120.00249 * 2 1 3 5 5 O 1.21300 * 120.00317 * 120.00001 * 4 2 1 6 6 N 1.34780 * 120.00041 * 299.99701 * 4 2 1 7 7 C 1.40152 * 119.99741 * 175.37017 * 6 4 2 8 8 C 1.38851 * 119.99277 * 214.81125 * 7 6 4 9 9 C 1.38059 * 120.00594 * 179.76776 * 8 7 6 10 10 C 1.38894 * 119.99136 * 0.49528 * 9 8 7 11 11 N 1.39893 * 120.00311 * 179.78753 * 10 9 8 12 12 C 1.47018 * 111.00161 * 123.61437 * 11 10 9 13 13 C 1.53090 * 109.25675 * 177.60757 * 12 11 10 14 14 O 1.43011 * 109.26196 * 56.84736 * 13 12 11 15 15 C 1.43014 * 113.73792 * 301.32968 * 14 13 12 16 16 C 1.47013 * 111.00147 * 359.97438 * 11 10 9 17 17 C 1.38886 * 119.99034 * 359.76141 * 10 9 8 18 18 C 1.38063 * 119.99904 * 0.02562 * 17 10 9 19 19 N 1.46903 * 109.47073 * 240.00519 * 2 1 3 20 20 C 1.46906 * 110.99665 * 306.04306 * 19 2 1 21 21 C 1.46900 * 111.00291 * 69.99554 * 19 2 1 22 22 C 1.50702 * 109.46844 * 169.99895 * 21 19 2 23 23 H 1.07997 * 120.00499 * 359.73229 * 22 21 19 24 24 C 1.37880 * 119.99493 * 179.97438 * 22 21 19 25 25 N 1.31519 * 119.99705 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 120.00476 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47182 * 89.99048 * 26 24 22 28 28 H 1.48497 * 109.47028 * 209.99828 * 26 24 22 29 29 H 1.48507 * 109.46572 * 329.99690 * 26 24 22 30 30 H 1.08996 * 109.46724 * 299.99772 * 1 2 3 31 31 H 1.09002 * 109.47415 * 59.99913 * 1 2 3 32 32 H 1.09000 * 109.47046 * 179.97438 * 1 2 3 33 33 H 0.96996 * 119.99844 * 355.37278 * 6 4 2 34 34 H 1.07998 * 119.99563 * 0.02562 * 8 7 6 35 35 H 1.07997 * 120.00902 * 180.28572 * 9 8 7 36 36 H 1.09001 * 109.50025 * 297.54268 * 12 11 10 37 37 H 1.08999 * 109.50765 * 57.66627 * 12 11 10 38 38 H 1.09002 * 109.51060 * 296.90914 * 13 12 11 39 39 H 1.09005 * 109.50307 * 176.78042 * 13 12 11 40 40 H 1.09003 * 109.50388 * 298.73267 * 15 14 13 41 41 H 1.08997 * 109.54236 * 178.62784 * 15 14 13 42 42 H 1.09002 * 109.50593 * 302.32740 * 16 11 10 43 43 H 1.08994 * 109.50694 * 62.45397 * 16 11 10 44 44 H 1.08006 * 120.00047 * 180.02562 * 17 10 9 45 45 H 1.08004 * 119.99923 * 179.97438 * 18 17 10 46 46 H 1.08996 * 109.47040 * 183.95699 * 20 19 2 47 47 H 1.09001 * 109.47103 * 303.95710 * 20 19 2 48 48 H 1.08996 * 109.47097 * 63.95875 * 20 19 2 49 49 H 1.09000 * 109.46985 * 50.00478 * 21 19 2 50 50 H 1.08996 * 109.47124 * 289.99812 * 21 19 2 51 51 H 0.96996 * 120.00167 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7297 -1.6967 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.0919 -0.9644 3.5971 8 6 1.2629 -0.9921 4.7106 9 6 1.6398 -1.6997 5.8346 10 6 2.8531 -2.3754 5.8551 11 7 3.2373 -3.0888 6.9955 12 6 3.5145 -4.4951 6.6687 13 6 3.9877 -5.2227 7.9298 14 8 2.9958 -5.0897 8.9514 15 6 2.7017 -3.7330 9.2950 16 6 2.2155 -2.9902 8.0478 17 6 3.6846 -2.3431 4.7432 18 6 3.3053 -1.6390 3.6178 19 7 2.0197 -0.6924 -1.1995 20 6 1.4343 -2.0354 -1.3079 21 6 1.7529 0.0973 -2.4091 22 6 2.4774 -0.5162 -3.5795 23 1 3.0797 -1.4014 -3.4380 24 6 2.3754 0.0557 -4.8299 25 7 3.0073 -0.4800 -5.8515 26 14 1.3397 1.5911 -5.0733 27 1 2.1831 2.7953 -4.8641 28 1 0.7910 1.6045 -6.4531 29 1 0.2217 1.5940 -4.0958 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2059 0.5758 2.5447 34 1 0.3212 -0.4635 4.6960 35 1 0.9929 -1.7251 6.6990 36 1 2.6062 -4.9677 6.2949 37 1 4.2918 -4.5452 5.9062 38 1 4.9248 -4.7844 8.2730 39 1 4.1397 -6.2786 7.7054 40 1 3.6014 -3.2513 9.6780 41 1 1.9239 -3.7106 10.0583 42 1 2.0446 -1.9417 8.2921 43 1 1.2864 -3.4386 7.6961 44 1 4.6280 -2.8688 4.7588 45 1 3.9521 -1.6135 2.7532 46 1 1.8664 -2.5520 -2.1649 47 1 1.6466 -2.5987 -0.3992 48 1 0.3556 -1.9520 -1.4400 49 1 2.1025 1.1190 -2.2604 50 1 0.6814 0.1053 -2.6088 51 1 2.9359 -0.0776 -6.7311 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637219.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:27 Heat of formation + Delta-G solvation = -14.882907 kcal Electronic energy + Delta-G solvation = -30389.110533 eV Core-core repulsion = 26289.618381 eV Total energy + Delta-G solvation = -4099.492151 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.97734 -40.23106 -38.65249 -36.94817 -35.90901 -34.13060 -32.66410 -32.13130 -30.85056 -30.73462 -29.25496 -27.67445 -26.64099 -25.54324 -24.99764 -23.80789 -22.62531 -22.08318 -21.07827 -20.30010 -19.43289 -18.18183 -17.49224 -16.97919 -16.77829 -16.49342 -15.81489 -15.67732 -15.43112 -15.39707 -15.09552 -14.75709 -14.43387 -14.24359 -14.02803 -13.97519 -13.79533 -13.59206 -13.18874 -12.93336 -12.69837 -12.56532 -12.49069 -12.12175 -12.04908 -11.86736 -11.86400 -11.47846 -11.29019 -11.13340 -11.09447 -10.98436 -10.59345 -10.54041 -10.47892 -10.09310 -9.96323 -9.45283 -9.37170 -9.25093 -9.01705 -8.58172 -7.72925 -7.38828 -6.05555 -4.03084 1.11106 1.24458 2.72237 2.98555 3.22855 3.25770 3.32768 3.33580 3.40594 3.68404 4.35464 4.39548 4.41951 4.52348 4.65292 4.68891 4.75061 4.75793 4.81342 4.84292 5.02574 5.14037 5.19989 5.21123 5.23982 5.25429 5.29151 5.31254 5.33666 5.45590 5.48893 5.67603 5.76994 5.84309 5.87452 5.95624 6.12482 6.18382 6.28475 6.33682 6.39531 6.55241 6.63723 6.70859 6.73591 6.85959 6.99348 7.05046 7.35415 7.54971 7.84998 7.96799 8.30186 8.63900 9.05056 9.54996 11.07593 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029249 B = 0.001856 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.068476 B =15081.335024 C =15658.666281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.062 3.938 3 H 0.104 0.896 4 C 0.521 3.479 5 O -0.495 6.495 6 N -0.681 5.681 7 C 0.134 3.866 8 C -0.124 4.124 9 C -0.150 4.150 10 C 0.084 3.916 11 N -0.486 5.486 12 C 0.018 3.982 13 C 0.062 3.938 14 O -0.385 6.385 15 C 0.063 3.937 16 C 0.013 3.987 17 C -0.116 4.116 18 C -0.096 4.096 19 N -0.507 5.507 20 C 0.030 3.970 21 C 0.163 3.837 22 C -0.508 4.508 23 H 0.082 0.918 24 C 0.068 3.932 25 N -0.899 5.899 26 Si 0.875 3.125 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.268 1.268 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.408 0.592 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.055 0.945 44 H 0.127 0.873 45 H 0.145 0.855 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.012 0.988 49 H 0.023 0.977 50 H -0.007 1.007 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 -2.287 30.840 31.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.051 4.051 3 H 0.122 0.878 4 C 0.308 3.692 5 O -0.367 6.367 6 N -0.328 5.328 7 C 0.039 3.961 8 C -0.145 4.145 9 C -0.171 4.171 10 C -0.013 4.013 11 N -0.203 5.203 12 C -0.108 4.108 13 C -0.015 4.015 14 O -0.303 6.303 15 C -0.015 4.015 16 C -0.115 4.115 17 C -0.137 4.137 18 C -0.116 4.116 19 N -0.230 5.230 20 C -0.118 4.118 21 C 0.037 3.963 22 C -0.546 4.546 23 H 0.100 0.900 24 C -0.134 4.134 25 N -0.538 5.538 26 Si 0.702 3.298 27 H -0.201 1.201 28 H -0.212 1.212 29 H -0.193 1.193 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.243 0.757 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.111 0.889 43 H 0.073 0.927 44 H 0.145 0.855 45 H 0.163 0.837 46 H 0.097 0.903 47 H 0.083 0.917 48 H 0.031 0.969 49 H 0.041 0.959 50 H 0.010 0.990 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.019 -3.047 30.813 31.110 hybrid contribution -2.237 1.481 -0.785 2.795 sum -5.256 -1.566 30.028 30.525 Atomic orbital electron populations 1.22442 0.96021 1.03095 1.02699 1.21670 0.93679 0.99029 0.90678 0.87808 1.21030 0.79703 0.84658 0.83801 1.90661 1.34786 1.25414 1.85826 1.43697 1.57872 1.26742 1.04443 1.17759 0.93776 0.97553 0.87044 1.20741 0.98936 1.01649 0.93162 1.21001 0.95511 1.01709 0.98918 1.18865 0.93548 0.98582 0.90276 1.59462 1.41758 1.11403 1.07648 1.22965 1.02184 0.86540 0.99066 1.22726 0.91278 1.00970 0.86482 1.88004 1.59788 1.25806 1.56736 1.22707 1.00989 0.82285 0.95478 1.22964 0.93633 1.02251 0.92608 1.20687 0.99548 1.01558 0.91898 1.21275 0.94922 0.96953 0.98469 1.61915 1.57305 1.02920 1.00860 1.22409 0.95674 0.90800 1.02909 1.20247 0.94855 0.93429 0.87792 1.21016 1.29465 1.13783 0.90383 0.89968 1.24903 0.95490 0.97071 0.95913 1.69893 1.43016 1.40581 1.00296 0.86874 0.81157 0.84171 0.77589 1.20144 1.21193 1.19335 0.92482 0.90863 0.91627 0.75678 0.85755 0.85515 0.92872 0.88725 0.91982 0.87945 0.92070 0.88090 0.88882 0.92717 0.85548 0.83697 0.90257 0.91709 0.96939 0.95865 0.98959 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 8.34 37.16 0.31 -2.15 16 2 C 0.06 1.00 2.73 -68.87 -0.19 0.81 16 3 H 0.10 1.52 7.93 -51.93 -0.41 1.11 16 4 C 0.52 8.05 6.69 -10.99 -0.07 7.98 16 5 O -0.50 -9.40 11.77 5.54 0.07 -9.34 16 6 N -0.68 -7.92 5.20 -9.82 -0.05 -7.98 16 7 C 0.13 1.61 6.30 -83.60 -0.53 1.08 16 8 C -0.12 -1.22 9.96 -39.42 -0.39 -1.61 16 9 C -0.15 -1.42 8.81 -39.40 -0.35 -1.76 16 10 C 0.08 0.87 5.64 -83.70 -0.47 0.40 16 11 N -0.49 -4.30 4.78 -170.76 -0.82 -5.12 16 12 C 0.02 0.15 5.41 -3.71 -0.02 0.13 16 13 C 0.06 0.43 7.01 37.20 0.26 0.69 16 14 O -0.38 -3.27 10.83 -35.23 -0.38 -3.65 16 15 C 0.06 0.40 7.01 37.21 0.26 0.66 16 16 C 0.01 0.09 4.33 -3.71 -0.02 0.07 16 17 C -0.12 -1.32 9.19 -39.41 -0.36 -1.69 16 18 C -0.10 -1.26 8.69 -39.42 -0.34 -1.60 16 19 N -0.51 -10.71 4.44 -237.73 -1.06 -11.76 16 20 C 0.03 0.61 8.31 60.07 0.50 1.11 16 21 C 0.16 3.85 3.36 -4.97 -0.02 3.84 16 22 C -0.51 -14.46 9.06 -34.44 -0.31 -14.77 16 23 H 0.08 2.59 7.36 -52.49 -0.39 2.20 16 24 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 25 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 26 Si 0.87 21.11 27.47 -169.99 -4.67 16.44 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 30 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 31 H 0.07 1.06 6.91 -51.93 -0.36 0.71 16 32 H 0.06 0.92 6.41 -51.93 -0.33 0.59 16 33 H 0.41 3.40 8.39 -40.82 -0.34 3.06 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 0.93 5.81 -52.49 -0.30 0.62 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.71 6.86 -51.93 -0.36 0.35 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.55 7.23 -51.93 -0.38 0.17 16 43 H 0.05 0.40 7.53 -51.93 -0.39 0.01 16 44 H 0.13 1.28 7.20 -52.48 -0.38 0.91 16 45 H 0.15 2.21 6.22 -52.48 -0.33 1.88 16 46 H 0.08 1.80 6.86 -51.93 -0.36 1.45 16 47 H 0.06 1.28 5.82 -51.93 -0.30 0.98 16 48 H 0.01 0.23 6.46 -51.93 -0.34 -0.10 16 49 H 0.02 0.54 7.36 -51.93 -0.38 0.16 16 50 H -0.01 -0.17 6.11 -51.93 -0.32 -0.49 16 51 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 390.74 15.07 5.89 5.89 Total: -1.00 -34.16 390.74 -9.84 -44.00 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -7.76 Total: 3.24 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -1.84 Total: -4.95 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -1.15 Total: -51.63 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.32 Total: -12.99 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.16 -9.84 -44.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637219.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.119 kcal (2) G-P(sol) polarization free energy of solvation -34.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds