Wall clock time and date at job start Wed Apr 1 2020 04:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47046 * 2 1 4 4 C 1.50692 * 109.47157 * 120.00249 * 2 1 3 5 5 O 1.21300 * 120.00317 * 120.00001 * 4 2 1 6 6 N 1.34780 * 120.00041 * 299.99701 * 4 2 1 7 7 C 1.40152 * 119.99741 * 175.37017 * 6 4 2 8 8 C 1.38851 * 119.99277 * 214.81125 * 7 6 4 9 9 C 1.38059 * 120.00594 * 179.76776 * 8 7 6 10 10 C 1.38894 * 119.99136 * 0.49528 * 9 8 7 11 11 N 1.39893 * 120.00311 * 179.78753 * 10 9 8 12 12 C 1.47018 * 111.00161 * 123.61437 * 11 10 9 13 13 C 1.53090 * 109.25675 * 177.60757 * 12 11 10 14 14 O 1.43011 * 109.26196 * 56.84736 * 13 12 11 15 15 C 1.43014 * 113.73792 * 301.32968 * 14 13 12 16 16 C 1.47013 * 111.00147 * 359.97438 * 11 10 9 17 17 C 1.38886 * 119.99034 * 359.76141 * 10 9 8 18 18 C 1.38063 * 119.99904 * 0.02562 * 17 10 9 19 19 N 1.46903 * 109.47073 * 240.00519 * 2 1 3 20 20 C 1.46906 * 110.99665 * 306.04306 * 19 2 1 21 21 C 1.46900 * 111.00291 * 69.99554 * 19 2 1 22 22 C 1.50702 * 109.46844 * 169.99895 * 21 19 2 23 23 H 1.07997 * 120.00499 * 359.73229 * 22 21 19 24 24 C 1.37880 * 119.99493 * 179.97438 * 22 21 19 25 25 N 1.31519 * 119.99705 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 120.00476 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47182 * 89.99048 * 26 24 22 28 28 H 1.48497 * 109.47028 * 209.99828 * 26 24 22 29 29 H 1.48507 * 109.46572 * 329.99690 * 26 24 22 30 30 H 1.08996 * 109.46724 * 299.99772 * 1 2 3 31 31 H 1.09002 * 109.47415 * 59.99913 * 1 2 3 32 32 H 1.09000 * 109.47046 * 179.97438 * 1 2 3 33 33 H 0.96996 * 119.99844 * 355.37278 * 6 4 2 34 34 H 1.07998 * 119.99563 * 0.02562 * 8 7 6 35 35 H 1.07997 * 120.00902 * 180.28572 * 9 8 7 36 36 H 1.09001 * 109.50025 * 297.54268 * 12 11 10 37 37 H 1.08999 * 109.50765 * 57.66627 * 12 11 10 38 38 H 1.09002 * 109.51060 * 296.90914 * 13 12 11 39 39 H 1.09005 * 109.50307 * 176.78042 * 13 12 11 40 40 H 1.09003 * 109.50388 * 298.73267 * 15 14 13 41 41 H 1.08997 * 109.54236 * 178.62784 * 15 14 13 42 42 H 1.09002 * 109.50593 * 302.32740 * 16 11 10 43 43 H 1.08994 * 109.50694 * 62.45397 * 16 11 10 44 44 H 1.08006 * 120.00047 * 180.02562 * 17 10 9 45 45 H 1.08004 * 119.99923 * 179.97438 * 18 17 10 46 46 H 1.08996 * 109.47040 * 183.95699 * 20 19 2 47 47 H 1.09001 * 109.47103 * 303.95710 * 20 19 2 48 48 H 1.08996 * 109.47097 * 63.95875 * 20 19 2 49 49 H 1.09000 * 109.46985 * 50.00478 * 21 19 2 50 50 H 1.08996 * 109.47124 * 289.99812 * 21 19 2 51 51 H 0.96996 * 120.00167 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7297 -1.6967 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.0919 -0.9644 3.5971 8 6 1.2629 -0.9921 4.7106 9 6 1.6398 -1.6997 5.8346 10 6 2.8531 -2.3754 5.8551 11 7 3.2373 -3.0888 6.9955 12 6 3.5145 -4.4951 6.6687 13 6 3.9877 -5.2227 7.9298 14 8 2.9958 -5.0897 8.9514 15 6 2.7017 -3.7330 9.2950 16 6 2.2155 -2.9902 8.0478 17 6 3.6846 -2.3431 4.7432 18 6 3.3053 -1.6390 3.6178 19 7 2.0197 -0.6924 -1.1995 20 6 1.4343 -2.0354 -1.3079 21 6 1.7529 0.0973 -2.4091 22 6 2.4774 -0.5162 -3.5795 23 1 3.0797 -1.4014 -3.4380 24 6 2.3754 0.0557 -4.8299 25 7 3.0073 -0.4800 -5.8515 26 14 1.3397 1.5911 -5.0733 27 1 2.1831 2.7953 -4.8641 28 1 0.7910 1.6045 -6.4531 29 1 0.2217 1.5940 -4.0958 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2059 0.5758 2.5447 34 1 0.3212 -0.4635 4.6960 35 1 0.9929 -1.7251 6.6990 36 1 2.6062 -4.9677 6.2949 37 1 4.2918 -4.5452 5.9062 38 1 4.9248 -4.7844 8.2730 39 1 4.1397 -6.2786 7.7054 40 1 3.6014 -3.2513 9.6780 41 1 1.9239 -3.7106 10.0583 42 1 2.0446 -1.9417 8.2921 43 1 1.2864 -3.4386 7.6961 44 1 4.6280 -2.8688 4.7588 45 1 3.9521 -1.6135 2.7532 46 1 1.8664 -2.5520 -2.1649 47 1 1.6466 -2.5987 -0.3992 48 1 0.3556 -1.9520 -1.4400 49 1 2.1025 1.1190 -2.2604 50 1 0.6814 0.1053 -2.6088 51 1 2.9359 -0.0776 -6.7311 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078637219.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:26 Heat of formation + Delta-G solvation = -41.015851 kcal Electronic energy + Delta-G solvation = -30390.243742 eV Core-core repulsion = 26289.618381 eV Total energy + Delta-G solvation = -4100.625361 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.87267 -41.15177 -39.53290 -38.24705 -36.86765 -35.13181 -34.71992 -32.76439 -32.14733 -31.57532 -30.17969 -29.47565 -27.41563 -27.03469 -25.62248 -25.24608 -23.56129 -22.97709 -22.24106 -21.27191 -20.70596 -19.19338 -18.87812 -18.18500 -18.04722 -17.15424 -16.66744 -16.55398 -16.39024 -16.31885 -16.13866 -15.88952 -15.75831 -15.53545 -15.24177 -14.96273 -14.90285 -14.71764 -14.40307 -14.36924 -13.80680 -13.59000 -13.39637 -13.20161 -13.16120 -12.95395 -12.82624 -12.73146 -12.51666 -12.40831 -12.31543 -12.24536 -12.06467 -11.83806 -11.63406 -11.50386 -11.41727 -10.78203 -10.76742 -10.58720 -10.15044 -9.91377 -8.99422 -8.55518 -8.26503 -6.31151 0.24790 0.41152 1.36480 1.39490 1.49608 1.58606 1.96153 2.36299 2.52548 2.84973 2.92322 3.06234 3.23159 3.66250 3.78309 3.82348 3.94992 3.98767 4.04954 4.09942 4.11908 4.18831 4.25472 4.37282 4.46342 4.49792 4.51513 4.53794 4.60450 4.66839 4.69605 4.74687 4.75896 4.79311 4.86256 4.91877 4.99494 5.02588 5.08367 5.20346 5.21235 5.22091 5.38918 5.51325 5.52873 5.76223 5.93120 5.95126 6.12231 6.23776 6.26126 6.45673 6.66923 6.75666 7.20683 7.32010 8.90672 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029249 B = 0.001856 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.068476 B =15081.335024 C =15658.666281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.060 3.940 3 H 0.123 0.877 4 C 0.522 3.478 5 O -0.541 6.541 6 N -0.659 5.659 7 C 0.112 3.888 8 C -0.110 4.110 9 C -0.149 4.149 10 C 0.086 3.914 11 N -0.493 5.493 12 C 0.019 3.981 13 C 0.064 3.936 14 O -0.403 6.403 15 C 0.060 3.940 16 C 0.011 3.989 17 C -0.128 4.128 18 C -0.117 4.117 19 N -0.535 5.535 20 C 0.044 3.956 21 C 0.175 3.825 22 C -0.521 4.521 23 H 0.028 0.972 24 C 0.002 3.998 25 N -0.952 5.952 26 Si 0.954 3.046 27 H -0.264 1.264 28 H -0.285 1.285 29 H -0.240 1.240 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.426 0.574 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.043 0.957 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.116 0.884 40 H 0.063 0.937 41 H 0.122 0.878 42 H 0.108 0.892 43 H 0.054 0.946 44 H 0.127 0.873 45 H 0.114 0.886 46 H 0.040 0.960 47 H 0.068 0.932 48 H 0.029 0.971 49 H 0.036 0.964 50 H 0.003 0.997 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 0.174 34.035 34.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.053 4.053 3 H 0.140 0.860 4 C 0.310 3.690 5 O -0.417 6.417 6 N -0.306 5.306 7 C 0.018 3.982 8 C -0.131 4.131 9 C -0.170 4.170 10 C -0.012 4.012 11 N -0.209 5.209 12 C -0.107 4.107 13 C -0.012 4.012 14 O -0.322 6.322 15 C -0.016 4.016 16 C -0.115 4.115 17 C -0.149 4.149 18 C -0.137 4.137 19 N -0.258 5.258 20 C -0.104 4.104 21 C 0.049 3.951 22 C -0.559 4.559 23 H 0.046 0.954 24 C -0.195 4.195 25 N -0.593 5.593 26 Si 0.777 3.223 27 H -0.188 1.188 28 H -0.211 1.211 29 H -0.164 1.164 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.266 0.734 34 H 0.175 0.825 35 H 0.172 0.828 36 H 0.061 0.939 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.134 0.866 40 H 0.082 0.918 41 H 0.140 0.860 42 H 0.127 0.873 43 H 0.072 0.928 44 H 0.145 0.855 45 H 0.132 0.868 46 H 0.059 0.941 47 H 0.086 0.914 48 H 0.047 0.953 49 H 0.054 0.946 50 H 0.020 0.980 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.038 -0.564 34.083 34.618 hybrid contribution -1.197 0.599 -1.628 2.108 sum -7.235 0.035 32.455 33.252 Atomic orbital electron populations 1.22379 0.93294 1.03127 1.04623 1.21791 0.95829 0.99156 0.88482 0.85977 1.20939 0.79226 0.84049 0.84787 1.90664 1.36938 1.27538 1.86523 1.43362 1.57020 1.27084 1.03160 1.17891 0.94032 0.98464 0.87813 1.21036 0.99398 1.00777 0.91890 1.21358 0.95232 1.00685 0.99714 1.19022 0.93608 0.98420 0.90147 1.59451 1.42473 1.11530 1.07468 1.22972 1.01733 0.86253 0.99740 1.22787 0.91086 1.01712 0.85661 1.87982 1.60126 1.27127 1.56977 1.22872 1.01826 0.81319 0.95625 1.23078 0.93011 1.03331 0.92118 1.20709 1.00156 1.01845 0.92196 1.21128 0.95741 0.98732 0.98148 1.61669 1.59115 1.03141 1.01911 1.22191 0.96195 0.90733 1.01306 1.19980 0.94395 0.93611 0.87132 1.21280 1.29272 1.12437 0.92902 0.95386 1.25969 0.97003 1.01265 0.95222 1.70080 1.45210 1.42909 1.01057 0.85616 0.79804 0.78857 0.78048 1.18841 1.21067 1.16367 0.87979 0.91456 0.92533 0.73441 0.82530 0.82764 0.93877 0.88848 0.91586 0.86620 0.91839 0.85992 0.87342 0.92750 0.85516 0.86808 0.94142 0.91360 0.95275 0.94587 0.97967 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.10 8.34 71.98 0.60 -3.50 16 2 C 0.06 1.80 2.73 44.17 0.12 1.92 16 3 H 0.12 3.23 7.93 -2.39 -0.02 3.21 16 4 C 0.52 15.77 6.69 87.65 0.59 16.35 16 5 O -0.54 -21.30 11.77 -3.09 -0.04 -21.34 16 6 N -0.66 -13.92 5.20 -303.35 -1.58 -15.50 16 7 C 0.11 2.54 6.30 38.10 0.24 2.78 16 8 C -0.11 -1.80 9.96 22.37 0.22 -1.58 16 9 C -0.15 -2.35 8.81 22.38 0.20 -2.15 16 10 C 0.09 1.64 5.64 38.17 0.22 1.86 16 11 N -0.49 -7.97 4.78 -694.15 -3.32 -11.29 16 12 C 0.02 0.29 5.41 86.31 0.47 0.76 16 13 C 0.06 0.82 7.01 72.01 0.50 1.33 16 14 O -0.40 -6.18 10.83 -148.98 -1.61 -7.80 16 15 C 0.06 0.63 7.01 72.01 0.50 1.13 16 16 C 0.01 0.13 4.33 86.31 0.37 0.50 16 17 C -0.13 -2.97 9.19 22.38 0.21 -2.77 16 18 C -0.12 -3.16 8.69 22.37 0.19 -2.97 16 19 N -0.53 -22.78 4.44 -906.04 -4.02 -26.80 16 20 C 0.04 1.86 8.31 127.69 1.06 2.92 16 21 C 0.18 8.22 3.36 85.56 0.29 8.51 16 22 C -0.52 -30.77 9.06 25.60 0.23 -30.54 16 23 H 0.03 1.90 7.36 -2.91 -0.02 1.88 16 24 C 0.00 0.12 5.47 84.65 0.46 0.59 16 25 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 26 Si 0.95 43.09 27.47 68.60 1.88 44.98 16 27 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 28 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 29 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 30 H 0.10 1.46 7.67 -2.39 -0.02 1.44 16 31 H 0.07 1.69 6.91 -2.39 -0.02 1.68 16 32 H 0.06 1.44 6.41 -2.39 -0.02 1.42 16 33 H 0.43 5.49 8.39 -92.71 -0.78 4.71 16 34 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.15 1.58 5.81 -2.91 -0.02 1.56 16 36 H 0.04 0.74 8.14 -2.39 -0.02 0.73 16 37 H 0.09 1.42 6.86 -2.39 -0.02 1.40 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.11 0.90 7.23 -2.39 -0.02 0.88 16 43 H 0.05 0.64 7.53 -2.39 -0.02 0.63 16 44 H 0.13 2.75 7.20 -2.91 -0.02 2.73 16 45 H 0.11 3.78 6.22 -2.91 -0.02 3.76 16 46 H 0.04 1.97 6.86 -2.39 -0.02 1.96 16 47 H 0.07 2.82 5.82 -2.39 -0.01 2.81 16 48 H 0.03 1.11 6.46 -2.39 -0.02 1.09 16 49 H 0.04 1.60 7.36 -2.39 -0.02 1.58 16 50 H 0.00 0.12 6.11 -2.39 -0.01 0.11 16 51 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -79.63 390.74 -1.78 -81.41 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.12 Total: 21.49 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 6.48 Total: -4.85 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -8.62 Total: -113.89 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -1.65 Total: -29.13 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.98 kcal Total: -79.63 -1.78 -81.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637219.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.394 kcal (2) G-P(sol) polarization free energy of solvation -79.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds