Wall clock time and date at job start Wed Apr 1 2020 05:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46796 * 2 1 4 4 C 1.50707 * 109.47320 * 119.99715 * 2 1 3 5 5 O 1.21280 * 119.99802 * 101.83115 * 4 2 1 6 6 N 1.34774 * 119.99783 * 281.83142 * 4 2 1 7 7 C 1.46495 * 120.00371 * 6.71856 * 6 4 2 8 8 C 1.50705 * 109.46965 * 93.82837 * 7 6 4 9 9 H 1.08001 * 120.00286 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99803 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00558 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99908 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46949 * 60.00335 * 12 10 8 14 14 H 1.48498 * 109.47278 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47490 * 300.00561 * 12 10 8 16 16 C 1.39931 * 119.99704 * 186.71531 * 6 4 2 17 17 C 1.38877 * 120.06895 * 6.81507 * 16 6 4 18 18 C 1.38109 * 119.92860 * 179.76270 * 17 16 6 19 19 C 1.38287 * 120.06815 * 0.48330 * 18 17 16 20 20 C 1.38275 * 120.14202 * 359.76931 * 19 18 17 21 21 C 1.38111 * 120.07287 * 359.97438 * 20 19 18 22 22 N 1.46892 * 109.47289 * 240.00270 * 2 1 3 23 23 C 1.46907 * 110.99803 * 306.04181 * 22 2 1 24 24 C 1.46897 * 111.00513 * 69.99509 * 22 2 1 25 25 C 1.50697 * 109.47274 * 170.00013 * 24 22 2 26 26 O 1.21277 * 120.00298 * 0.02562 * 25 24 22 27 27 N 1.34781 * 119.99787 * 179.97438 * 25 24 22 28 28 C 1.46493 * 119.99937 * 180.02562 * 27 25 24 29 29 C 1.46498 * 119.99809 * 0.02562 * 27 25 24 30 30 H 1.09003 * 109.46474 * 174.12844 * 1 2 3 31 31 H 1.09003 * 109.46807 * 294.11971 * 1 2 3 32 32 H 1.08992 * 109.47631 * 54.12453 * 1 2 3 33 33 H 1.08999 * 109.47520 * 213.82813 * 7 6 4 34 34 H 1.08999 * 109.47104 * 333.83020 * 7 6 4 35 35 H 0.96994 * 120.00471 * 179.97438 * 11 10 8 36 36 H 1.07999 * 120.03256 * 359.97124 * 17 16 6 37 37 H 1.07997 * 119.96830 * 180.25818 * 18 17 16 38 38 H 1.07996 * 119.92590 * 179.74467 * 19 18 17 39 39 H 1.08000 * 119.96439 * 179.97438 * 20 19 18 40 40 H 1.07999 * 120.04117 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.46971 * 183.95403 * 23 22 2 42 42 H 1.08998 * 109.47040 * 303.95061 * 23 22 2 43 43 H 1.08997 * 109.46955 * 63.95720 * 23 22 2 44 44 H 1.08998 * 109.46936 * 49.99696 * 24 22 2 45 45 H 1.08999 * 109.47099 * 290.00556 * 24 22 2 46 46 H 1.08996 * 109.47293 * 90.00419 * 28 27 25 47 47 H 1.09007 * 109.47468 * 210.00305 * 28 27 25 48 48 H 1.09001 * 109.47045 * 330.00049 * 28 27 25 49 49 H 1.09003 * 109.47218 * 89.99873 * 29 27 25 50 50 H 1.09004 * 109.46969 * 209.99674 * 29 27 25 51 51 H 1.08997 * 109.47315 * 329.99643 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.4376 -1.8506 1.1495 6 7 2.0314 -0.0785 2.4210 7 6 1.4084 1.2412 2.5493 8 6 -0.0173 1.0808 3.0107 9 1 -0.4190 0.0946 3.1907 10 6 -0.8085 2.1932 3.2039 11 7 -0.3194 3.3943 2.9853 12 14 -2.5760 1.9945 3.7751 13 1 -2.5965 1.3066 5.0910 14 1 -3.2071 3.3322 3.9065 15 1 -3.3291 1.1866 2.7825 16 6 2.6255 -0.6830 3.5344 17 6 3.3386 -1.8655 3.3864 18 6 3.9279 -2.4570 4.4865 19 6 3.8000 -1.8785 5.7360 20 6 3.0861 -0.7040 5.8875 21 6 2.4989 -0.1046 4.7905 22 7 2.0197 -0.6924 -1.1994 23 6 1.4344 -2.0355 -1.3077 24 6 1.7529 0.0972 -2.4090 25 6 2.4775 -0.5163 -3.5793 26 8 3.1495 -1.5134 -3.4215 27 7 2.3778 0.0426 -4.8018 28 6 3.0816 -0.5540 -5.9396 29 6 1.5655 1.2468 -4.9925 30 1 -0.3632 -1.0223 -0.1051 31 1 -0.3633 0.4200 0.9380 32 1 -0.3634 0.6022 -0.8326 33 1 1.9613 1.8348 3.2774 34 1 1.4231 1.7454 1.5831 35 1 -0.8761 4.1768 3.1209 36 1 3.4351 -2.3201 2.4115 37 1 4.4862 -3.3744 4.3714 38 1 4.2582 -2.3453 6.5953 39 1 2.9877 -0.2549 6.8647 40 1 1.9411 0.8125 4.9095 41 1 1.8665 -2.5521 -2.1648 42 1 1.6468 -2.5987 -0.3991 43 1 0.3557 -1.9521 -1.4399 44 1 2.1024 1.1189 -2.2604 45 1 0.6814 0.1053 -2.6087 46 1 2.4357 -1.2872 -6.4225 47 1 3.3436 0.2261 -6.6544 48 1 3.9893 -1.0448 -5.5884 49 1 2.1846 2.1308 -4.8392 50 1 1.1627 1.2566 -6.0054 51 1 0.7449 1.2490 -4.2751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078721057.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:05 Heat of formation + Delta-G solvation = 4.181341 kcal Electronic energy + Delta-G solvation = -31958.589526 eV Core-core repulsion = 27859.924063 eV Total energy + Delta-G solvation = -4098.665463 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.54667 -39.84224 -38.15798 -36.49665 -35.50519 -35.32470 -32.78717 -31.12452 -30.24805 -29.35388 -28.60194 -27.57991 -27.40794 -25.95723 -24.98349 -23.45147 -22.95620 -21.75094 -20.78000 -19.20340 -18.67084 -17.19016 -16.98657 -16.65043 -16.51991 -16.10457 -16.02215 -15.36695 -14.94938 -14.70655 -14.52615 -14.27985 -14.19847 -13.66350 -13.40373 -13.28467 -13.08784 -12.93412 -12.86406 -12.80206 -12.71468 -12.55778 -12.23258 -12.21458 -11.93633 -11.90387 -11.52936 -11.23003 -11.18357 -11.06611 -10.97488 -10.78396 -10.72427 -10.50780 -10.32948 -10.07032 -9.73082 -9.21487 -8.83258 -8.73160 -8.52751 -8.28567 -7.94606 -7.15028 -6.33596 -4.41440 1.91756 2.06362 2.63758 2.78388 3.15393 3.20951 3.21270 3.29072 3.52817 4.19070 4.27967 4.52045 4.56063 4.83313 4.98146 5.00096 5.04483 5.12413 5.20914 5.27021 5.40968 5.44766 5.49623 5.50964 5.53855 5.61156 5.62277 5.76116 5.81070 5.96806 6.10542 6.12800 6.18215 6.21843 6.28402 6.34709 6.55624 6.68100 6.76031 6.85925 6.89866 7.04973 7.08322 7.09927 7.19107 7.30078 7.32983 7.34489 7.59394 7.83606 7.86059 8.14051 8.19377 8.62481 8.81565 9.24879 10.71678 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009214 B = 0.003728 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.976002 B = 7507.991576 C = 9879.517371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.074 3.926 3 H 0.107 0.893 4 C 0.531 3.469 5 O -0.525 6.525 6 N -0.536 5.536 7 C 0.227 3.773 8 C -0.538 4.538 9 H 0.064 0.936 10 C 0.071 3.929 11 N -0.885 5.885 12 Si 0.895 3.105 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.172 3.828 17 C -0.174 4.174 18 C -0.109 4.109 19 C -0.163 4.163 20 C -0.106 4.106 21 C -0.144 4.144 22 N -0.505 5.505 23 C 0.002 3.998 24 C 0.037 3.963 25 C 0.515 3.485 26 O -0.515 6.515 27 N -0.630 5.630 28 C 0.087 3.913 29 C 0.077 3.923 30 H 0.057 0.943 31 H 0.119 0.881 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.268 0.732 36 H 0.172 0.828 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.139 0.861 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.017 0.983 44 H 0.103 0.897 45 H 0.066 0.934 46 H 0.051 0.949 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.058 0.942 50 H 0.071 0.929 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.812 -1.946 -11.107 11.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.037 4.037 3 H 0.125 0.875 4 C 0.321 3.679 5 O -0.404 6.404 6 N -0.255 5.255 7 C 0.108 3.892 8 C -0.576 4.576 9 H 0.082 0.918 10 C -0.133 4.133 11 N -0.522 5.522 12 Si 0.722 3.278 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.200 1.200 16 C 0.076 3.924 17 C -0.194 4.194 18 C -0.128 4.128 19 C -0.182 4.182 20 C -0.125 4.125 21 C -0.164 4.164 22 N -0.229 5.229 23 C -0.145 4.145 24 C -0.094 4.094 25 C 0.303 3.697 26 O -0.389 6.389 27 N -0.367 5.367 28 C -0.055 4.055 29 C -0.066 4.066 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.189 0.811 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.157 0.843 41 H 0.095 0.905 42 H 0.122 0.878 43 H 0.036 0.964 44 H 0.121 0.879 45 H 0.083 0.917 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.095 0.905 49 H 0.077 0.923 50 H 0.089 0.911 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.811 -2.864 -11.101 12.081 hybrid contribution -2.057 0.498 0.244 2.131 sum 1.753 -2.365 -10.856 11.248 Atomic orbital electron populations 1.22718 0.94075 1.02482 1.06743 1.21562 0.95524 0.98269 0.88320 0.87499 1.20337 0.77375 0.85985 0.84249 1.90238 1.47162 1.18061 1.84915 1.45961 1.51901 1.21097 1.06563 1.19734 0.93223 0.76990 0.99259 1.21295 0.95906 0.93480 1.46943 0.91756 1.24898 0.98806 0.94888 0.94742 1.69899 1.37074 0.97823 1.47413 0.86585 0.84022 0.77431 0.79745 1.19906 1.21034 1.19956 1.18038 0.93820 0.93336 0.87173 1.22503 0.98612 0.96017 1.02245 1.20995 0.99620 0.99482 0.92682 1.20962 1.02653 0.97390 0.97177 1.20851 0.97934 0.95777 0.97927 1.21124 1.02165 1.02340 0.90813 1.61670 1.58988 1.02870 0.99376 1.22945 0.95524 0.90084 1.05915 1.22011 0.98778 0.98747 0.89836 1.20661 0.81537 0.84213 0.83335 1.90681 1.39686 1.24771 1.83729 1.47794 1.50697 1.29402 1.08778 1.21582 0.97721 0.98268 0.87958 1.21833 0.95232 0.86760 1.02822 0.92430 0.86283 0.92582 0.93770 0.93411 0.92200 0.81115 0.86859 0.87254 0.86612 0.84327 0.90508 0.87847 0.96430 0.87910 0.91679 0.93025 0.91454 0.90524 0.92302 0.91054 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.45 8.31 37.16 0.31 -3.15 16 2 C 0.07 1.31 1.89 -68.86 -0.13 1.18 16 3 H 0.11 1.84 6.45 -51.93 -0.34 1.50 16 4 C 0.53 10.86 6.75 -10.98 -0.07 10.79 16 5 O -0.52 -11.35 10.23 5.56 0.06 -11.29 16 6 N -0.54 -11.35 2.68 -114.73 -0.31 -11.66 16 7 C 0.23 5.04 4.05 -5.19 -0.02 5.02 16 8 C -0.54 -12.83 6.42 -34.44 -0.22 -13.06 16 9 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.88 -22.37 13.29 55.43 0.74 -21.63 16 12 Si 0.90 19.36 29.54 -169.99 -5.02 14.34 16 13 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 C 0.17 3.61 6.48 -83.69 -0.54 3.06 16 17 C -0.17 -3.46 8.98 -39.39 -0.35 -3.82 16 18 C -0.11 -1.87 10.04 -39.61 -0.40 -2.27 16 19 C -0.16 -2.63 10.04 -39.55 -0.40 -3.02 16 20 C -0.11 -1.82 10.04 -39.61 -0.40 -2.22 16 21 C -0.14 -2.86 9.06 -39.39 -0.36 -3.21 16 22 N -0.51 -8.51 4.33 -237.73 -1.03 -9.54 16 23 C 0.00 0.04 8.20 60.07 0.49 0.53 16 24 C 0.04 0.50 3.57 -4.98 -0.02 0.48 16 25 C 0.51 7.21 7.40 -10.98 -0.08 7.13 16 26 O -0.51 -9.20 13.89 5.56 0.08 -9.12 16 27 N -0.63 -6.59 3.27 -189.52 -0.62 -7.21 16 28 C 0.09 0.77 10.44 59.84 0.62 1.39 16 29 C 0.08 0.53 10.24 59.85 0.61 1.14 16 30 H 0.06 0.98 6.07 -51.93 -0.32 0.66 16 31 H 0.12 2.39 4.64 -51.93 -0.24 2.15 16 32 H 0.06 0.82 7.19 -51.93 -0.37 0.45 16 33 H 0.04 1.04 6.76 -51.93 -0.35 0.69 16 34 H 0.05 1.06 5.72 -51.93 -0.30 0.76 16 35 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 36 H 0.17 3.60 4.71 -55.24 -0.26 3.34 16 37 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.14 2.90 6.18 -52.49 -0.32 2.58 16 41 H 0.08 1.35 5.88 -51.93 -0.31 1.05 16 42 H 0.10 1.99 5.24 -51.93 -0.27 1.72 16 43 H 0.02 0.27 6.33 -51.93 -0.33 -0.06 16 44 H 0.10 1.20 7.90 -51.93 -0.41 0.79 16 45 H 0.07 0.76 6.46 -51.93 -0.34 0.42 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 48 H 0.08 0.80 7.42 -51.93 -0.39 0.42 16 49 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.07 0.35 8.07 -51.93 -0.42 -0.06 16 51 H 0.07 0.48 6.44 -51.93 -0.33 0.15 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -29.42 392.02 -8.61 -38.03 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -7.36 Total: 10.56 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.05 Total: 1.61 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -1.22 Total: -50.03 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: 0.13 Total: -20.41 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.42 -8.61 -38.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078721057.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.211 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds