Wall clock time and date at job start Wed Apr 1 2020 05:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46796 * 2 1 4 4 C 1.50707 * 109.47320 * 119.99715 * 2 1 3 5 5 O 1.21280 * 119.99802 * 101.83115 * 4 2 1 6 6 N 1.34774 * 119.99783 * 281.83142 * 4 2 1 7 7 C 1.46495 * 120.00371 * 6.71856 * 6 4 2 8 8 C 1.50705 * 109.46965 * 93.82837 * 7 6 4 9 9 H 1.08001 * 120.00286 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99803 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00558 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99908 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46949 * 60.00335 * 12 10 8 14 14 H 1.48498 * 109.47278 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47490 * 300.00561 * 12 10 8 16 16 C 1.39931 * 119.99704 * 186.71531 * 6 4 2 17 17 C 1.38877 * 120.06895 * 6.81507 * 16 6 4 18 18 C 1.38109 * 119.92860 * 179.76270 * 17 16 6 19 19 C 1.38287 * 120.06815 * 0.48330 * 18 17 16 20 20 C 1.38275 * 120.14202 * 359.76931 * 19 18 17 21 21 C 1.38111 * 120.07287 * 359.97438 * 20 19 18 22 22 N 1.46892 * 109.47289 * 240.00270 * 2 1 3 23 23 C 1.46907 * 110.99803 * 306.04181 * 22 2 1 24 24 C 1.46897 * 111.00513 * 69.99509 * 22 2 1 25 25 C 1.50697 * 109.47274 * 170.00013 * 24 22 2 26 26 O 1.21277 * 120.00298 * 0.02562 * 25 24 22 27 27 N 1.34781 * 119.99787 * 179.97438 * 25 24 22 28 28 C 1.46493 * 119.99937 * 180.02562 * 27 25 24 29 29 C 1.46498 * 119.99809 * 0.02562 * 27 25 24 30 30 H 1.09003 * 109.46474 * 174.12844 * 1 2 3 31 31 H 1.09003 * 109.46807 * 294.11971 * 1 2 3 32 32 H 1.08992 * 109.47631 * 54.12453 * 1 2 3 33 33 H 1.08999 * 109.47520 * 213.82813 * 7 6 4 34 34 H 1.08999 * 109.47104 * 333.83020 * 7 6 4 35 35 H 0.96994 * 120.00471 * 179.97438 * 11 10 8 36 36 H 1.07999 * 120.03256 * 359.97124 * 17 16 6 37 37 H 1.07997 * 119.96830 * 180.25818 * 18 17 16 38 38 H 1.07996 * 119.92590 * 179.74467 * 19 18 17 39 39 H 1.08000 * 119.96439 * 179.97438 * 20 19 18 40 40 H 1.07999 * 120.04117 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.46971 * 183.95403 * 23 22 2 42 42 H 1.08998 * 109.47040 * 303.95061 * 23 22 2 43 43 H 1.08997 * 109.46955 * 63.95720 * 23 22 2 44 44 H 1.08998 * 109.46936 * 49.99696 * 24 22 2 45 45 H 1.08999 * 109.47099 * 290.00556 * 24 22 2 46 46 H 1.08996 * 109.47293 * 90.00419 * 28 27 25 47 47 H 1.09007 * 109.47468 * 210.00305 * 28 27 25 48 48 H 1.09001 * 109.47045 * 330.00049 * 28 27 25 49 49 H 1.09003 * 109.47218 * 89.99873 * 29 27 25 50 50 H 1.09004 * 109.46969 * 209.99674 * 29 27 25 51 51 H 1.08997 * 109.47315 * 329.99643 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.4376 -1.8506 1.1495 6 7 2.0314 -0.0785 2.4210 7 6 1.4084 1.2412 2.5493 8 6 -0.0173 1.0808 3.0107 9 1 -0.4190 0.0946 3.1907 10 6 -0.8085 2.1932 3.2039 11 7 -0.3194 3.3943 2.9853 12 14 -2.5760 1.9945 3.7751 13 1 -2.5965 1.3066 5.0910 14 1 -3.2071 3.3322 3.9065 15 1 -3.3291 1.1866 2.7825 16 6 2.6255 -0.6830 3.5344 17 6 3.3386 -1.8655 3.3864 18 6 3.9279 -2.4570 4.4865 19 6 3.8000 -1.8785 5.7360 20 6 3.0861 -0.7040 5.8875 21 6 2.4989 -0.1046 4.7905 22 7 2.0197 -0.6924 -1.1994 23 6 1.4344 -2.0355 -1.3077 24 6 1.7529 0.0972 -2.4090 25 6 2.4775 -0.5163 -3.5793 26 8 3.1495 -1.5134 -3.4215 27 7 2.3778 0.0426 -4.8018 28 6 3.0816 -0.5540 -5.9396 29 6 1.5655 1.2468 -4.9925 30 1 -0.3632 -1.0223 -0.1051 31 1 -0.3633 0.4200 0.9380 32 1 -0.3634 0.6022 -0.8326 33 1 1.9613 1.8348 3.2774 34 1 1.4231 1.7454 1.5831 35 1 -0.8761 4.1768 3.1209 36 1 3.4351 -2.3201 2.4115 37 1 4.4862 -3.3744 4.3714 38 1 4.2582 -2.3453 6.5953 39 1 2.9877 -0.2549 6.8647 40 1 1.9411 0.8125 4.9095 41 1 1.8665 -2.5521 -2.1648 42 1 1.6468 -2.5987 -0.3991 43 1 0.3557 -1.9521 -1.4399 44 1 2.1024 1.1189 -2.2604 45 1 0.6814 0.1053 -2.6087 46 1 2.4357 -1.2872 -6.4225 47 1 3.3436 0.2261 -6.6544 48 1 3.9893 -1.0448 -5.5884 49 1 2.1846 2.1308 -4.8392 50 1 1.1627 1.2566 -6.0054 51 1 0.7449 1.2490 -4.2751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078721057.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:04 Heat of formation + Delta-G solvation = -13.606352 kcal Electronic energy + Delta-G solvation = -31959.360859 eV Core-core repulsion = 27859.924063 eV Total energy + Delta-G solvation = -4099.436796 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.02737 -40.96633 -39.54795 -37.81573 -36.98381 -36.47474 -34.61371 -32.46310 -31.69812 -30.59724 -29.84808 -29.16779 -28.40144 -27.04538 -26.15995 -25.22357 -24.33693 -23.20779 -22.18494 -20.20504 -20.15341 -18.72064 -18.34334 -18.18473 -18.02531 -17.09932 -17.03190 -16.75218 -16.49609 -16.12082 -16.04074 -15.62210 -15.44552 -14.97412 -14.80619 -14.56723 -14.44017 -14.33819 -14.12433 -14.02574 -13.74305 -13.53322 -13.44645 -13.37329 -13.28910 -13.04289 -12.90255 -12.77105 -12.71407 -12.52036 -12.40778 -12.29808 -12.19299 -12.10376 -11.96184 -11.74891 -10.89965 -10.85393 -10.60416 -10.04647 -9.73464 -9.65463 -9.24818 -8.72339 -8.19486 -6.33278 0.45573 0.60977 1.42363 1.45412 1.51012 1.60228 1.70563 1.81623 2.15637 2.41216 2.98676 3.07692 3.11717 3.49795 3.57711 4.02429 4.08750 4.16138 4.19327 4.23576 4.29846 4.37374 4.41770 4.44960 4.50763 4.51528 4.57893 4.66477 4.68608 4.72696 4.78641 4.81827 4.90991 4.92205 4.96227 5.00622 5.12098 5.22742 5.31452 5.40422 5.50544 5.54273 5.64555 5.68337 5.74878 5.84360 5.91279 5.96161 5.98944 6.34438 6.36486 6.50113 6.76021 7.18382 7.21395 7.35844 8.83758 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009214 B = 0.003728 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.976002 B = 7507.991576 C = 9879.517371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.084 3.916 3 H 0.111 0.889 4 C 0.519 3.481 5 O -0.541 6.541 6 N -0.542 5.542 7 C 0.244 3.756 8 C -0.534 4.534 9 H 0.047 0.953 10 C 0.038 3.962 11 N -0.909 5.909 12 Si 0.945 3.055 13 H -0.279 1.279 14 H -0.280 1.280 15 H -0.270 1.270 16 C 0.142 3.858 17 C -0.193 4.193 18 C -0.107 4.107 19 C -0.151 4.151 20 C -0.103 4.103 21 C -0.163 4.163 22 N -0.522 5.522 23 C 0.015 3.985 24 C 0.037 3.963 25 C 0.509 3.491 26 O -0.566 6.566 27 N -0.624 5.624 28 C 0.084 3.916 29 C 0.069 3.931 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.025 0.975 34 H 0.049 0.951 35 H 0.270 0.730 36 H 0.156 0.844 37 H 0.142 0.858 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.119 0.881 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.031 0.969 44 H 0.121 0.879 45 H 0.088 0.912 46 H 0.058 0.942 47 H 0.099 0.901 48 H 0.053 0.947 49 H 0.070 0.930 50 H 0.095 0.905 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 -1.520 -11.430 11.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.027 4.027 3 H 0.129 0.871 4 C 0.310 3.690 5 O -0.421 6.421 6 N -0.261 5.261 7 C 0.124 3.876 8 C -0.572 4.572 9 H 0.066 0.934 10 C -0.164 4.164 11 N -0.547 5.547 12 Si 0.771 3.229 13 H -0.205 1.205 14 H -0.205 1.205 15 H -0.195 1.195 16 C 0.047 3.953 17 C -0.213 4.213 18 C -0.125 4.125 19 C -0.170 4.170 20 C -0.121 4.121 21 C -0.184 4.184 22 N -0.246 5.246 23 C -0.132 4.132 24 C -0.093 4.093 25 C 0.297 3.703 26 O -0.444 6.444 27 N -0.359 5.359 28 C -0.058 4.058 29 C -0.073 4.073 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.168 0.832 39 H 0.163 0.837 40 H 0.137 0.863 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.139 0.861 45 H 0.106 0.894 46 H 0.077 0.923 47 H 0.118 0.882 48 H 0.072 0.928 49 H 0.089 0.911 50 H 0.114 0.886 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.279 -2.408 -11.458 12.159 hybrid contribution -1.821 0.332 0.341 1.882 sum 1.458 -2.076 -11.118 11.403 Atomic orbital electron populations 1.22589 0.93510 1.02615 1.06301 1.21456 0.95716 0.97945 0.87604 0.87084 1.20941 0.77126 0.86064 0.84844 1.90246 1.47861 1.18778 1.85265 1.45972 1.52159 1.20751 1.07251 1.19410 0.92251 0.77468 0.98441 1.21261 0.96599 0.92665 1.46661 0.93445 1.25415 1.01571 0.94610 0.94843 1.69965 1.38120 0.98260 1.48351 0.85798 0.80672 0.77415 0.78988 1.20492 1.20479 1.19458 1.18353 0.95076 0.94312 0.87569 1.22460 0.99858 0.96180 1.02753 1.21354 0.98730 1.00121 0.92298 1.21387 1.01177 0.96456 0.97957 1.21222 0.96762 0.95918 0.98203 1.21118 1.03410 1.02252 0.91589 1.61575 1.59494 1.03078 1.00408 1.22710 0.96195 0.90202 1.04084 1.22124 1.00173 0.98863 0.88131 1.20816 0.81142 0.83789 0.84551 1.90661 1.42040 1.27039 1.84671 1.47913 1.50203 1.29850 1.07927 1.21715 0.96811 0.99478 0.87825 1.22122 0.95181 0.85412 1.04598 0.92647 0.89080 0.89701 0.95690 0.93367 0.92062 0.82734 0.84053 0.83175 0.83745 0.86288 0.91247 0.90484 0.95072 0.86078 0.89394 0.92305 0.88222 0.92832 0.91094 0.88596 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.48 8.31 71.98 0.60 -5.88 16 2 C 0.08 2.99 1.89 44.17 0.08 3.07 16 3 H 0.11 3.83 6.45 -2.38 -0.02 3.81 16 4 C 0.52 22.09 6.75 87.66 0.59 22.69 16 5 O -0.54 -24.56 10.23 -3.03 -0.03 -24.59 16 6 N -0.54 -23.93 2.68 -635.30 -1.71 -25.64 16 7 C 0.24 11.23 4.05 85.64 0.35 11.58 16 8 C -0.53 -26.08 6.42 25.60 0.16 -25.91 16 9 H 0.05 2.45 7.81 -2.91 -0.02 2.43 16 10 C 0.04 1.84 5.46 84.65 0.46 2.30 16 11 N -0.91 -46.16 13.29 21.45 0.28 -45.88 16 12 Si 0.95 39.60 29.54 68.60 2.03 41.62 16 13 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 15 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 16 C 0.14 6.15 6.48 38.15 0.25 6.40 16 17 C -0.19 -7.81 8.98 22.39 0.20 -7.61 16 18 C -0.11 -3.50 10.04 22.25 0.22 -3.27 16 19 C -0.15 -4.45 10.04 22.29 0.22 -4.22 16 20 C -0.10 -3.35 10.04 22.25 0.22 -3.13 16 21 C -0.16 -6.60 9.06 22.39 0.20 -6.40 16 22 N -0.52 -17.61 4.33 -906.04 -3.92 -21.54 16 23 C 0.02 0.54 8.20 127.69 1.05 1.59 16 24 C 0.04 0.94 3.57 85.56 0.31 1.25 16 25 C 0.51 13.93 7.40 87.66 0.65 14.57 16 26 O -0.57 -20.70 13.89 -3.02 -0.04 -20.75 16 27 N -0.62 -11.92 3.27 -871.91 -2.85 -14.77 16 28 C 0.08 1.35 10.44 127.77 1.33 2.69 16 29 C 0.07 0.72 10.24 127.77 1.31 2.03 16 30 H 0.05 1.87 6.07 -2.39 -0.01 1.85 16 31 H 0.09 3.68 4.64 -2.39 -0.01 3.67 16 32 H 0.08 2.33 7.19 -2.39 -0.02 2.31 16 33 H 0.03 1.24 6.76 -2.39 -0.02 1.22 16 34 H 0.05 2.20 5.72 -2.39 -0.01 2.18 16 35 H 0.27 13.10 8.31 -92.71 -0.77 12.32 16 36 H 0.16 6.80 4.71 -46.49 -0.22 6.58 16 37 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 39 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 40 H 0.12 5.21 6.18 -2.91 -0.02 5.19 16 41 H 0.07 2.53 5.88 -2.39 -0.01 2.51 16 42 H 0.08 3.10 5.24 -2.39 -0.01 3.09 16 43 H 0.03 0.97 6.33 -2.39 -0.02 0.95 16 44 H 0.12 2.58 7.90 -2.39 -0.02 2.56 16 45 H 0.09 1.82 6.46 -2.39 -0.02 1.81 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.10 0.95 8.07 -2.38 -0.02 0.93 16 48 H 0.05 1.13 7.42 -2.39 -0.02 1.11 16 49 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.10 0.58 8.07 -2.39 -0.02 0.56 16 51 H 0.08 0.77 6.44 -2.39 -0.02 0.76 16 Total: -1.00 -66.63 392.02 2.72 -63.91 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: 0.75 Total: 35.89 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 8.21 Total: 11.74 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -8.20 Total: -107.82 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -0.07 Total: -45.33 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.62 kcal Total: -66.63 2.72 -63.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078721057.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.307 kcal (2) G-P(sol) polarization free energy of solvation -66.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds