Wall clock time and date at job start Wed Apr 1 2020 05:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47181 * 239.99627 * 2 1 3 5 5 O 1.21285 * 120.00561 * 252.87982 * 4 2 1 6 6 N 1.34780 * 119.99673 * 72.87568 * 4 2 1 7 7 C 1.46494 * 120.00322 * 356.34911 * 6 4 2 8 8 C 1.50702 * 109.47576 * 95.69280 * 7 6 4 9 9 H 1.07999 * 119.99813 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99838 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00396 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99675 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47134 * 90.00557 * 12 10 8 14 14 H 1.48500 * 109.46898 * 210.00371 * 12 10 8 15 15 H 1.48504 * 109.47219 * 329.99807 * 12 10 8 16 16 C 1.39928 * 119.99650 * 176.06460 * 6 4 2 17 17 C 1.38867 * 120.07029 * 6.65064 * 16 6 4 18 18 C 1.38121 * 119.92708 * 179.76233 * 17 16 6 19 19 C 1.38280 * 120.06837 * 0.48905 * 18 17 16 20 20 C 1.38279 * 120.14301 * 359.76631 * 19 18 17 21 21 C 1.38112 * 120.07008 * 359.97438 * 20 19 18 22 22 N 1.46900 * 109.47013 * 120.00036 * 2 1 3 23 23 C 1.46904 * 111.00325 * 58.95011 * 22 2 1 24 24 C 1.46905 * 110.99767 * 294.99584 * 22 2 1 25 25 C 1.50705 * 109.47038 * 189.99674 * 24 22 2 26 26 O 1.21279 * 119.99814 * 0.02562 * 25 24 22 27 27 N 1.34776 * 120.00042 * 179.97438 * 25 24 22 28 28 C 1.46501 * 120.00139 * 180.02562 * 27 25 24 29 29 C 1.46501 * 119.99768 * 0.02562 * 27 25 24 30 30 H 1.08999 * 109.47442 * 188.18935 * 1 2 3 31 31 H 1.09002 * 109.47185 * 308.19022 * 1 2 3 32 32 H 1.08995 * 109.47050 * 68.18374 * 1 2 3 33 33 H 1.09005 * 109.47082 * 215.70009 * 7 6 4 34 34 H 1.09010 * 109.46782 * 335.69374 * 7 6 4 35 35 H 0.97007 * 120.00350 * 179.97438 * 11 10 8 36 36 H 1.08002 * 120.03977 * 359.97438 * 17 16 6 37 37 H 1.08004 * 119.96226 * 180.25238 * 18 17 16 38 38 H 1.08003 * 119.92622 * 179.74068 * 19 18 17 39 39 H 1.07996 * 119.96538 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.03510 * 179.97438 * 21 20 19 41 41 H 1.08994 * 109.46835 * 59.99884 * 23 22 2 42 42 H 1.08991 * 109.47008 * 180.02562 * 23 22 2 43 43 H 1.09001 * 109.46757 * 300.00466 * 23 22 2 44 44 H 1.08997 * 109.47203 * 310.00230 * 24 22 2 45 45 H 1.09001 * 109.46686 * 70.00371 * 24 22 2 46 46 H 1.09003 * 109.46850 * 90.00451 * 28 27 25 47 47 H 1.08999 * 109.46890 * 210.00603 * 28 27 25 48 48 H 1.09000 * 109.46751 * 330.00944 * 28 27 25 49 49 H 1.09005 * 109.47350 * 89.99488 * 29 27 25 50 50 H 1.08997 * 109.47075 * 209.99364 * 29 27 25 51 51 H 1.08998 * 109.47312 * 329.99180 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.5260 -1.8141 -1.1344 6 7 1.9329 -0.1194 -2.4376 7 6 1.2649 1.1781 -2.5652 8 6 2.2936 2.2787 -2.5278 9 1 3.3405 2.0359 -2.4202 10 6 1.8985 3.5955 -2.6320 11 7 0.6238 3.8911 -2.7635 12 14 3.1738 4.9597 -2.5864 13 1 3.6385 5.2492 -3.9666 14 1 2.5691 6.1831 -2.0009 15 1 4.3274 4.5314 -1.7551 16 6 2.4731 -0.7424 -3.5681 17 6 2.9883 -2.0285 -3.4745 18 6 3.5164 -2.6425 -4.5934 19 6 3.5414 -1.9740 -5.8036 20 6 3.0339 -0.6913 -5.8990 21 6 2.4997 -0.0738 -4.7850 22 7 2.0197 -0.6925 1.1994 23 6 1.5283 -2.0761 1.2461 24 6 1.6487 0.0393 2.4181 25 6 2.3679 -0.5571 3.6006 26 8 3.1160 -1.4986 3.4436 27 7 2.1803 -0.0435 4.8325 28 6 2.8798 -0.6228 5.9820 29 6 1.2770 1.0942 5.0220 30 1 -0.3634 -1.0172 0.1464 31 1 -0.3634 0.6354 0.8077 32 1 -0.3633 0.3819 -0.9540 33 1 0.7250 1.2173 -3.5113 34 1 0.5635 1.3082 -1.7409 35 1 0.3457 4.8176 -2.8364 36 1 2.9731 -2.5495 -2.5285 37 1 3.9135 -3.6443 -4.5221 38 1 3.9586 -2.4547 -6.6761 39 1 3.0554 -0.1717 -6.8455 40 1 2.1039 0.9283 -4.8601 41 1 1.8761 -2.6151 0.3649 42 1 1.9052 -2.5655 2.1440 43 1 0.4384 -2.0741 1.2640 44 1 1.9298 1.0871 2.3124 45 1 0.5722 -0.0344 2.5725 46 1 3.8370 -0.1190 6.1164 47 1 2.2730 -0.4954 6.8784 48 1 3.0499 -1.6850 5.8061 49 1 0.2691 0.7290 5.2195 50 1 1.6186 1.6926 5.8665 51 1 1.2711 1.7075 4.1209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078721059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:08 Heat of formation + Delta-G solvation = 12.155938 kcal Electronic energy + Delta-G solvation = -31975.517598 eV Core-core repulsion = 27877.197939 eV Total energy + Delta-G solvation = -4098.319659 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.60397 -39.83600 -38.17850 -36.50019 -35.49379 -35.35795 -32.73173 -31.25242 -30.24000 -29.33567 -28.68008 -27.56462 -27.35733 -25.96080 -25.15541 -23.39473 -22.92432 -21.81632 -20.73231 -19.16915 -18.80557 -17.18238 -16.91063 -16.85528 -16.35093 -16.09974 -16.02958 -15.39182 -15.04330 -14.66161 -14.56092 -14.39717 -14.13976 -13.68612 -13.41348 -13.34412 -13.08685 -12.98930 -12.86363 -12.79367 -12.75181 -12.57020 -12.33433 -12.23443 -12.01808 -11.90701 -11.54208 -11.29594 -11.25034 -11.19747 -10.95959 -10.80209 -10.65137 -10.49123 -10.28144 -10.02793 -9.71034 -9.16901 -8.82037 -8.69692 -8.45742 -8.28071 -7.93430 -7.16724 -6.30040 -4.38098 1.91705 2.07060 2.65691 2.79338 3.17207 3.19846 3.25005 3.31317 3.54846 4.20434 4.27840 4.53408 4.55819 4.85379 4.91972 5.04040 5.06656 5.11592 5.19832 5.28267 5.35994 5.41831 5.45705 5.51180 5.51471 5.58652 5.63475 5.75826 5.81295 5.86948 5.89712 6.09966 6.13008 6.17827 6.24522 6.30734 6.36008 6.57149 6.69975 6.80195 6.90977 7.05033 7.09248 7.09976 7.19370 7.26786 7.33897 7.34939 7.63902 7.86945 7.87766 8.14554 8.21059 8.66457 8.81822 9.30030 10.75832 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008916 B = 0.003856 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.789998 B = 7259.919461 C = 9521.100178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.070 3.930 3 H 0.125 0.875 4 C 0.529 3.471 5 O -0.524 6.524 6 N -0.533 5.533 7 C 0.216 3.784 8 C -0.539 4.539 9 H 0.064 0.936 10 C 0.070 3.930 11 N -0.889 5.889 12 Si 0.896 3.104 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.170 3.830 17 C -0.180 4.180 18 C -0.110 4.110 19 C -0.162 4.162 20 C -0.107 4.107 21 C -0.143 4.143 22 N -0.501 5.501 23 C -0.004 4.004 24 C 0.037 3.963 25 C 0.515 3.485 26 O -0.514 6.514 27 N -0.630 5.630 28 C 0.088 3.912 29 C 0.077 3.923 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.267 0.733 36 H 0.179 0.821 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.139 0.861 41 H 0.111 0.889 42 H 0.075 0.925 43 H 0.015 0.985 44 H 0.106 0.894 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.066 0.934 48 H 0.075 0.925 49 H 0.056 0.944 50 H 0.071 0.929 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.683 -5.081 10.368 11.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.041 4.041 3 H 0.142 0.858 4 C 0.320 3.680 5 O -0.403 6.403 6 N -0.252 5.252 7 C 0.098 3.902 8 C -0.578 4.578 9 H 0.082 0.918 10 C -0.134 4.134 11 N -0.527 5.527 12 Si 0.723 3.277 13 H -0.203 1.203 14 H -0.210 1.210 15 H -0.196 1.196 16 C 0.074 3.926 17 C -0.200 4.200 18 C -0.129 4.129 19 C -0.181 4.181 20 C -0.126 4.126 21 C -0.163 4.163 22 N -0.225 5.225 23 C -0.151 4.151 24 C -0.094 4.094 25 C 0.303 3.697 26 O -0.388 6.388 27 N -0.367 5.367 28 C -0.055 4.055 29 C -0.066 4.066 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.195 0.805 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.157 0.843 41 H 0.129 0.871 42 H 0.094 0.906 43 H 0.033 0.967 44 H 0.123 0.877 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.085 0.915 48 H 0.094 0.906 49 H 0.074 0.926 50 H 0.090 0.910 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.685 -5.960 10.372 12.081 hybrid contribution -0.300 1.389 -0.007 1.421 sum -1.985 -4.571 10.365 11.501 Atomic orbital electron populations 1.22602 0.95349 1.02456 1.04585 1.21642 0.94242 0.99910 0.88329 0.85782 1.20339 0.78118 0.85291 0.84286 1.90127 1.45290 1.20326 1.84607 1.45950 1.52340 1.22054 1.04815 1.19980 0.93483 0.76922 0.99861 1.21409 0.93913 0.90484 1.51972 0.91779 1.24887 0.95458 0.98614 0.94451 1.69909 1.14532 1.19512 1.48758 0.86508 0.81487 0.81016 0.78666 1.20348 1.21011 1.19632 1.18062 0.95545 0.92020 0.86942 1.22786 1.00329 0.94745 1.02123 1.21020 0.99773 0.99317 0.92775 1.20972 1.03711 0.95834 0.97628 1.20852 0.98885 0.95015 0.97825 1.21142 1.02679 1.01073 0.91416 1.61656 1.59291 1.02589 0.98931 1.23085 0.96250 0.89418 1.06378 1.22020 0.98174 0.99629 0.89604 1.20658 0.82150 0.83388 0.83553 1.90685 1.36455 1.27453 1.84239 1.47791 1.47015 1.34216 1.07644 1.21582 0.96472 1.00075 0.87383 1.21829 0.93249 0.88370 1.03180 0.91940 0.91574 0.89545 0.93854 0.92215 0.92362 0.80477 0.86880 0.87280 0.86620 0.84294 0.87146 0.90623 0.96689 0.87653 0.91802 0.92888 0.91507 0.90616 0.92555 0.90985 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.87 8.07 37.16 0.30 -2.57 16 2 C 0.07 1.23 1.93 -68.86 -0.13 1.09 16 3 H 0.12 2.33 7.42 -51.93 -0.39 1.95 16 4 C 0.53 10.75 6.79 -10.99 -0.07 10.67 16 5 O -0.52 -11.13 9.86 5.55 0.05 -11.08 16 6 N -0.53 -11.29 2.69 -114.74 -0.31 -11.60 16 7 C 0.22 4.83 3.97 -5.20 -0.02 4.81 16 8 C -0.54 -13.32 8.59 -34.44 -0.30 -13.61 16 9 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 10 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -22.83 13.29 55.43 0.74 -22.09 16 12 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 C 0.17 3.58 6.47 -83.69 -0.54 3.03 16 17 C -0.18 -3.58 9.05 -39.39 -0.36 -3.93 16 18 C -0.11 -1.89 10.04 -39.61 -0.40 -2.29 16 19 C -0.16 -2.64 10.04 -39.55 -0.40 -3.03 16 20 C -0.11 -1.85 10.04 -39.61 -0.40 -2.25 16 21 C -0.14 -2.86 9.02 -39.39 -0.36 -3.22 16 22 N -0.50 -8.48 4.37 -237.73 -1.04 -9.51 16 23 C 0.00 -0.07 8.43 60.07 0.51 0.43 16 24 C 0.04 0.49 3.45 -4.97 -0.02 0.48 16 25 C 0.51 7.34 7.37 -10.98 -0.08 7.26 16 26 O -0.51 -9.34 13.91 5.56 0.08 -9.26 16 27 N -0.63 -6.74 3.27 -189.51 -0.62 -7.36 16 28 C 0.09 0.79 10.44 59.85 0.62 1.42 16 29 C 0.08 0.54 10.24 59.85 0.61 1.16 16 30 H 0.06 0.89 5.97 -51.93 -0.31 0.58 16 31 H 0.07 0.84 7.18 -51.93 -0.37 0.47 16 32 H 0.09 1.42 5.54 -51.93 -0.29 1.13 16 33 H 0.04 1.03 6.86 -51.93 -0.36 0.67 16 34 H 0.06 1.30 4.11 -51.92 -0.21 1.09 16 35 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 36 H 0.18 3.68 4.53 -56.21 -0.25 3.43 16 37 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 38 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 39 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.14 2.96 6.14 -52.49 -0.32 2.63 16 41 H 0.11 2.06 5.02 -51.93 -0.26 1.80 16 42 H 0.08 1.30 5.82 -51.93 -0.30 1.00 16 43 H 0.01 0.22 6.11 -51.93 -0.32 -0.10 16 44 H 0.11 1.29 7.26 -51.93 -0.38 0.91 16 45 H 0.06 0.72 7.10 -51.93 -0.37 0.35 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 48 H 0.08 0.80 7.42 -51.93 -0.39 0.41 16 49 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 51 H 0.08 0.52 6.44 -51.93 -0.33 0.18 16 LS Contribution 393.28 15.07 5.93 5.93 Total: -1.00 -30.23 393.28 -8.66 -38.89 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -7.35 Total: 10.19 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.12 Total: 1.09 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -1.23 Total: -50.56 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: 0.13 Total: -20.34 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.23 -8.66 -38.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078721059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.049 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds