Wall clock time and date at job start Wed Apr 1 2020 05:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47181 * 239.99627 * 2 1 3 5 5 O 1.21285 * 120.00561 * 252.87982 * 4 2 1 6 6 N 1.34780 * 119.99673 * 72.87568 * 4 2 1 7 7 C 1.46494 * 120.00322 * 356.34911 * 6 4 2 8 8 C 1.50702 * 109.47576 * 95.69280 * 7 6 4 9 9 H 1.07999 * 119.99813 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99838 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00396 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99675 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47134 * 90.00557 * 12 10 8 14 14 H 1.48500 * 109.46898 * 210.00371 * 12 10 8 15 15 H 1.48504 * 109.47219 * 329.99807 * 12 10 8 16 16 C 1.39928 * 119.99650 * 176.06460 * 6 4 2 17 17 C 1.38867 * 120.07029 * 6.65064 * 16 6 4 18 18 C 1.38121 * 119.92708 * 179.76233 * 17 16 6 19 19 C 1.38280 * 120.06837 * 0.48905 * 18 17 16 20 20 C 1.38279 * 120.14301 * 359.76631 * 19 18 17 21 21 C 1.38112 * 120.07008 * 359.97438 * 20 19 18 22 22 N 1.46900 * 109.47013 * 120.00036 * 2 1 3 23 23 C 1.46904 * 111.00325 * 58.95011 * 22 2 1 24 24 C 1.46905 * 110.99767 * 294.99584 * 22 2 1 25 25 C 1.50705 * 109.47038 * 189.99674 * 24 22 2 26 26 O 1.21279 * 119.99814 * 0.02562 * 25 24 22 27 27 N 1.34776 * 120.00042 * 179.97438 * 25 24 22 28 28 C 1.46501 * 120.00139 * 180.02562 * 27 25 24 29 29 C 1.46501 * 119.99768 * 0.02562 * 27 25 24 30 30 H 1.08999 * 109.47442 * 188.18935 * 1 2 3 31 31 H 1.09002 * 109.47185 * 308.19022 * 1 2 3 32 32 H 1.08995 * 109.47050 * 68.18374 * 1 2 3 33 33 H 1.09005 * 109.47082 * 215.70009 * 7 6 4 34 34 H 1.09010 * 109.46782 * 335.69374 * 7 6 4 35 35 H 0.97007 * 120.00350 * 179.97438 * 11 10 8 36 36 H 1.08002 * 120.03977 * 359.97438 * 17 16 6 37 37 H 1.08004 * 119.96226 * 180.25238 * 18 17 16 38 38 H 1.08003 * 119.92622 * 179.74068 * 19 18 17 39 39 H 1.07996 * 119.96538 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.03510 * 179.97438 * 21 20 19 41 41 H 1.08994 * 109.46835 * 59.99884 * 23 22 2 42 42 H 1.08991 * 109.47008 * 180.02562 * 23 22 2 43 43 H 1.09001 * 109.46757 * 300.00466 * 23 22 2 44 44 H 1.08997 * 109.47203 * 310.00230 * 24 22 2 45 45 H 1.09001 * 109.46686 * 70.00371 * 24 22 2 46 46 H 1.09003 * 109.46850 * 90.00451 * 28 27 25 47 47 H 1.08999 * 109.46890 * 210.00603 * 28 27 25 48 48 H 1.09000 * 109.46751 * 330.00944 * 28 27 25 49 49 H 1.09005 * 109.47350 * 89.99488 * 29 27 25 50 50 H 1.08997 * 109.47075 * 209.99364 * 29 27 25 51 51 H 1.08998 * 109.47312 * 329.99180 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.5260 -1.8141 -1.1344 6 7 1.9329 -0.1194 -2.4376 7 6 1.2649 1.1781 -2.5652 8 6 2.2936 2.2787 -2.5278 9 1 3.3405 2.0359 -2.4202 10 6 1.8985 3.5955 -2.6320 11 7 0.6238 3.8911 -2.7635 12 14 3.1738 4.9597 -2.5864 13 1 3.6385 5.2492 -3.9666 14 1 2.5691 6.1831 -2.0009 15 1 4.3274 4.5314 -1.7551 16 6 2.4731 -0.7424 -3.5681 17 6 2.9883 -2.0285 -3.4745 18 6 3.5164 -2.6425 -4.5934 19 6 3.5414 -1.9740 -5.8036 20 6 3.0339 -0.6913 -5.8990 21 6 2.4997 -0.0738 -4.7850 22 7 2.0197 -0.6925 1.1994 23 6 1.5283 -2.0761 1.2461 24 6 1.6487 0.0393 2.4181 25 6 2.3679 -0.5571 3.6006 26 8 3.1160 -1.4986 3.4436 27 7 2.1803 -0.0435 4.8325 28 6 2.8798 -0.6228 5.9820 29 6 1.2770 1.0942 5.0220 30 1 -0.3634 -1.0172 0.1464 31 1 -0.3634 0.6354 0.8077 32 1 -0.3633 0.3819 -0.9540 33 1 0.7250 1.2173 -3.5113 34 1 0.5635 1.3082 -1.7409 35 1 0.3457 4.8176 -2.8364 36 1 2.9731 -2.5495 -2.5285 37 1 3.9135 -3.6443 -4.5221 38 1 3.9586 -2.4547 -6.6761 39 1 3.0554 -0.1717 -6.8455 40 1 2.1039 0.9283 -4.8601 41 1 1.8761 -2.6151 0.3649 42 1 1.9052 -2.5655 2.1440 43 1 0.4384 -2.0741 1.2640 44 1 1.9298 1.0871 2.3124 45 1 0.5722 -0.0344 2.5725 46 1 3.8370 -0.1190 6.1164 47 1 2.2730 -0.4954 6.8784 48 1 3.0499 -1.6850 5.8061 49 1 0.2691 0.7290 5.2195 50 1 1.6186 1.6926 5.8665 51 1 1.2711 1.7075 4.1209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078721059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:07 Heat of formation + Delta-G solvation = -6.458407 kcal Electronic energy + Delta-G solvation = -31976.324776 eV Core-core repulsion = 27877.197939 eV Total energy + Delta-G solvation = -4099.126838 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.07680 -40.96752 -39.56242 -37.80792 -37.01000 -36.47702 -34.60958 -32.55191 -31.69555 -30.57155 -29.92228 -29.11750 -28.38643 -27.06563 -26.29448 -25.14097 -24.31808 -23.26039 -22.14020 -20.29423 -20.14998 -18.78742 -18.44646 -18.12504 -17.92002 -17.11247 -17.05263 -16.78583 -16.48370 -16.23153 -16.07570 -15.60254 -15.45937 -14.97895 -14.80153 -14.64731 -14.36832 -14.32130 -14.18984 -14.06965 -13.79751 -13.59877 -13.50643 -13.40425 -13.20814 -13.04581 -12.97445 -12.88947 -12.78758 -12.46585 -12.39263 -12.29115 -12.20542 -12.07604 -11.89657 -11.73987 -10.88283 -10.82263 -10.61030 -9.96605 -9.73619 -9.65629 -9.20935 -8.74224 -8.20649 -6.35750 0.45293 0.61138 1.40022 1.43750 1.51554 1.60325 1.65118 1.86628 2.15410 2.40627 2.99809 3.07350 3.08863 3.44584 3.58245 4.00321 4.09733 4.16516 4.19650 4.22981 4.28629 4.39820 4.41925 4.44826 4.50273 4.51130 4.55767 4.61226 4.66277 4.68842 4.71729 4.80196 4.87812 4.91501 4.95874 4.98318 5.06021 5.23927 5.25320 5.35925 5.48837 5.53979 5.64536 5.67638 5.74922 5.84469 5.90897 5.98067 6.00850 6.35326 6.37077 6.50549 6.75721 7.18442 7.21724 7.35548 8.82873 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008916 B = 0.003856 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.789998 B = 7259.919461 C = 9521.100178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.079 3.921 3 H 0.110 0.890 4 C 0.518 3.482 5 O -0.538 6.538 6 N -0.539 5.539 7 C 0.232 3.768 8 C -0.545 4.545 9 H 0.043 0.957 10 C 0.036 3.964 11 N -0.910 5.910 12 Si 0.948 3.052 13 H -0.278 1.278 14 H -0.274 1.274 15 H -0.277 1.277 16 C 0.140 3.860 17 C -0.199 4.199 18 C -0.107 4.107 19 C -0.151 4.151 20 C -0.104 4.104 21 C -0.164 4.164 22 N -0.523 5.523 23 C 0.009 3.991 24 C 0.038 3.962 25 C 0.508 3.492 26 O -0.566 6.566 27 N -0.625 5.625 28 C 0.084 3.916 29 C 0.069 3.931 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.068 0.932 35 H 0.270 0.730 36 H 0.166 0.834 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.034 0.966 44 H 0.117 0.883 45 H 0.092 0.908 46 H 0.055 0.945 47 H 0.101 0.899 48 H 0.054 0.946 49 H 0.074 0.926 50 H 0.094 0.906 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.040 -4.523 10.810 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.032 4.032 3 H 0.128 0.872 4 C 0.309 3.691 5 O -0.419 6.419 6 N -0.258 5.258 7 C 0.113 3.887 8 C -0.583 4.583 9 H 0.061 0.939 10 C -0.165 4.165 11 N -0.548 5.548 12 Si 0.774 3.226 13 H -0.204 1.204 14 H -0.199 1.199 15 H -0.202 1.202 16 C 0.045 3.955 17 C -0.218 4.218 18 C -0.126 4.126 19 C -0.170 4.170 20 C -0.122 4.122 21 C -0.184 4.184 22 N -0.247 5.247 23 C -0.138 4.138 24 C -0.092 4.092 25 C 0.296 3.704 26 O -0.445 6.445 27 N -0.359 5.359 28 C -0.058 4.058 29 C -0.073 4.073 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.182 0.818 37 H 0.160 0.840 38 H 0.168 0.832 39 H 0.162 0.838 40 H 0.135 0.865 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.052 0.948 44 H 0.135 0.865 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.120 0.880 48 H 0.073 0.927 49 H 0.092 0.908 50 H 0.112 0.888 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.066 -5.375 10.846 12.280 hybrid contribution -0.152 1.169 -0.151 1.188 sum -2.218 -4.206 10.695 11.705 Atomic orbital electron populations 1.22522 0.93276 1.03473 1.04729 1.21494 0.95704 0.98478 0.87530 0.87235 1.20945 0.77910 0.85384 0.84819 1.90142 1.45854 1.20948 1.84919 1.45954 1.52642 1.21670 1.05540 1.19682 0.92940 0.77115 0.98973 1.21431 0.93262 0.91538 1.52057 0.93894 1.25422 0.96875 1.00102 0.94139 1.69966 1.15555 1.20059 1.49234 0.85707 0.79424 0.79117 0.78362 1.20401 1.19870 1.20214 1.18389 0.96908 0.92922 0.87307 1.22769 1.01645 0.94556 1.02868 1.21389 0.98470 1.00473 0.92239 1.21397 1.02029 0.95080 0.98502 1.21214 0.97498 0.95637 0.97897 1.21124 1.04315 1.00561 0.92412 1.61545 1.60357 1.02919 0.99925 1.22850 0.97185 0.89212 1.04596 1.22111 0.99717 0.99566 0.87854 1.20846 0.81733 0.82969 0.84813 1.90663 1.38821 1.29803 1.85165 1.47916 1.46717 1.34465 1.06815 1.21715 0.97343 0.98795 0.87966 1.22123 0.93435 0.87403 1.04354 0.91168 0.88704 0.91184 0.95826 0.91468 0.92044 0.81799 0.83970 0.83208 0.83844 0.86451 0.89672 0.91441 0.94768 0.86479 0.88995 0.92683 0.88040 0.92667 0.90759 0.88766 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.32 8.07 71.98 0.58 -4.74 16 2 C 0.08 2.82 1.93 44.17 0.09 2.91 16 3 H 0.11 4.21 7.42 -2.39 -0.02 4.20 16 4 C 0.52 21.93 6.79 87.66 0.60 22.53 16 5 O -0.54 -23.99 9.86 -3.05 -0.03 -24.02 16 6 N -0.54 -23.91 2.69 -635.30 -1.71 -25.62 16 7 C 0.23 10.81 3.97 85.63 0.34 11.15 16 8 C -0.54 -27.70 8.59 25.60 0.22 -27.48 16 9 H 0.04 2.33 7.81 -2.91 -0.02 2.31 16 10 C 0.04 1.82 5.46 84.65 0.46 2.28 16 11 N -0.91 -46.85 13.29 21.44 0.28 -46.56 16 12 Si 0.95 40.71 29.54 68.60 2.03 42.74 16 13 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 15 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 16 C 0.14 6.10 6.47 38.15 0.25 6.35 16 17 C -0.20 -8.04 9.05 22.39 0.20 -7.84 16 18 C -0.11 -3.52 10.04 22.25 0.22 -3.30 16 19 C -0.15 -4.50 10.04 22.29 0.22 -4.28 16 20 C -0.10 -3.45 10.04 22.25 0.22 -3.23 16 21 C -0.16 -6.73 9.02 22.39 0.20 -6.52 16 22 N -0.52 -17.84 4.37 -906.03 -3.96 -21.80 16 23 C 0.01 0.29 8.43 127.69 1.08 1.37 16 24 C 0.04 0.97 3.45 85.56 0.30 1.27 16 25 C 0.51 14.24 7.37 87.66 0.65 14.89 16 26 O -0.57 -21.13 13.91 -3.03 -0.04 -21.17 16 27 N -0.62 -12.30 3.27 -871.88 -2.85 -15.15 16 28 C 0.08 1.40 10.44 127.77 1.33 2.74 16 29 C 0.07 0.75 10.24 127.77 1.31 2.06 16 30 H 0.07 1.94 5.97 -2.39 -0.01 1.92 16 31 H 0.09 2.21 7.18 -2.39 -0.02 2.19 16 32 H 0.07 2.31 5.54 -2.39 -0.01 2.29 16 33 H 0.02 1.18 6.86 -2.38 -0.02 1.17 16 34 H 0.07 3.01 4.11 -2.38 -0.01 3.00 16 35 H 0.27 13.19 8.31 -92.70 -0.77 12.42 16 36 H 0.17 7.10 4.53 -61.98 -0.28 6.82 16 37 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 39 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.12 5.26 6.14 -2.91 -0.02 5.24 16 41 H 0.09 3.32 5.02 -2.40 -0.01 3.31 16 42 H 0.07 2.39 5.82 -2.39 -0.01 2.38 16 43 H 0.03 0.99 6.11 -2.39 -0.01 0.97 16 44 H 0.12 2.70 7.26 -2.39 -0.02 2.68 16 45 H 0.09 1.83 7.10 -2.39 -0.02 1.82 16 46 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.10 0.97 8.07 -2.39 -0.02 0.95 16 48 H 0.05 1.16 7.42 -2.39 -0.02 1.15 16 49 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 50 H 0.09 0.66 8.07 -2.39 -0.02 0.64 16 51 H 0.08 0.85 6.44 -2.39 -0.02 0.83 16 Total: -1.00 -68.57 393.28 2.67 -65.91 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.68 Total: 35.53 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 8.26 Total: 10.15 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -8.24 Total: -109.14 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -0.07 Total: -45.19 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -68.57 2.67 -65.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078721059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.448 kcal (2) G-P(sol) polarization free energy of solvation -68.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds