Wall clock time and date at job start Wed Apr 1 2020 04:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46902 * 2 1 4 4 C 1.50696 * 109.47568 * 239.99878 * 2 1 3 5 5 O 1.21278 * 120.00269 * 267.03632 * 4 2 1 6 6 N 1.34779 * 119.99726 * 87.03241 * 4 2 1 7 7 C 1.47082 * 120.88170 * 175.05471 * 6 4 2 8 8 C 1.53238 * 108.52341 * 231.20860 * 7 6 4 9 9 N 1.46907 * 109.33642 * 306.17036 * 8 7 6 10 10 C 1.39966 * 110.99419 * 187.25289 * 9 8 7 11 11 C 1.38723 * 120.09400 * 300.01794 * 10 9 8 12 12 C 1.38218 * 119.98353 * 179.97438 * 11 10 9 13 13 C 1.38257 * 120.15909 * 359.97438 * 12 11 10 14 14 C 1.38279 * 120.18056 * 0.02562 * 13 12 11 15 15 C 1.38507 * 120.01688 * 0.02562 * 14 13 12 16 16 O 1.36014 * 120.07603 * 180.02562 * 15 14 13 17 17 C 1.46896 * 111.27213 * 63.10468 * 9 8 7 18 18 C 1.47084 * 120.88354 * 355.07787 * 6 4 2 19 19 N 1.46902 * 109.46949 * 119.99752 * 2 1 3 20 20 C 1.46907 * 110.99720 * 177.68758 * 19 2 1 21 21 C 1.46902 * 111.00177 * 301.64182 * 19 2 1 22 22 C 1.50693 * 109.47055 * 170.00042 * 21 19 2 23 23 H 1.08002 * 120.00126 * 0.02562 * 22 21 19 24 24 C 1.37882 * 120.00218 * 179.97438 * 22 21 19 25 25 N 1.31509 * 119.99624 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00299 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47049 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47175 * 120.00068 * 26 24 22 29 29 H 1.48500 * 109.47442 * 240.00075 * 26 24 22 30 30 H 1.09002 * 109.46705 * 187.38082 * 1 2 3 31 31 H 1.08997 * 109.47511 * 307.38745 * 1 2 3 32 32 H 1.08997 * 109.47140 * 67.38926 * 1 2 3 33 33 H 1.08999 * 109.62981 * 111.49491 * 7 6 4 34 34 H 1.09005 * 109.78736 * 351.00961 * 7 6 4 35 35 H 1.08996 * 109.49684 * 186.21209 * 8 7 6 36 36 H 1.09000 * 109.51327 * 66.13892 * 8 7 6 37 37 H 1.08003 * 120.00809 * 359.96186 * 11 10 9 38 38 H 1.08003 * 119.92125 * 179.97438 * 12 11 10 39 39 H 1.08007 * 119.90874 * 180.27686 * 13 12 11 40 40 H 1.08005 * 119.99244 * 179.97438 * 14 13 12 41 41 H 0.96695 * 114.00551 * 89.99759 * 16 15 14 42 42 H 1.09001 * 109.49016 * 56.85156 * 17 9 8 43 43 H 1.08999 * 109.49671 * 176.93049 * 17 9 8 44 44 H 1.08996 * 109.62940 * 248.50259 * 18 6 4 45 45 H 1.09003 * 109.62453 * 9.08162 * 18 6 4 46 46 H 1.08997 * 109.46630 * 64.37182 * 20 19 2 47 47 H 1.09003 * 109.46557 * 184.36686 * 20 19 2 48 48 H 1.08999 * 109.46979 * 304.36735 * 20 19 2 49 49 H 1.08999 * 109.47085 * 290.00155 * 21 19 2 50 50 H 1.08998 * 109.46806 * 49.99978 * 21 19 2 51 51 H 0.96996 * 120.00291 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2858 -1.8956 -1.1854 6 7 2.2001 -0.0286 -2.3809 7 6 2.7903 -0.6755 -3.5626 8 6 3.9309 0.2064 -4.0816 9 7 3.4292 1.5690 -4.3049 10 6 4.3962 2.3628 -4.9324 11 6 5.6225 2.5788 -4.3209 12 6 6.5760 3.3627 -4.9428 13 6 6.3111 3.9325 -6.1744 14 6 5.0910 3.7216 -6.7900 15 6 4.1298 2.9382 -6.1729 16 8 2.9295 2.7296 -6.7776 17 6 2.9779 2.1832 -3.0492 18 6 1.7982 1.3822 -2.4878 19 7 2.0196 -0.6925 1.1995 20 6 3.4871 -0.7602 1.2061 21 6 1.5168 -0.0494 2.4208 22 6 1.8302 -0.9182 3.6115 23 1 2.3513 -1.8542 3.4748 24 6 1.4528 -0.5176 4.8757 25 7 0.8188 0.6225 5.0423 26 14 1.8407 -1.5949 6.3516 27 1 2.5545 -2.8160 5.8992 28 1 2.6999 -0.8430 7.3011 29 1 0.5765 -1.9818 7.0280 30 1 -0.3633 -1.0192 0.1320 31 1 -0.3634 0.6240 0.8165 32 1 -0.3633 0.3951 -0.9487 33 1 2.0313 -0.7859 -4.3370 34 1 3.1806 -1.6561 -3.2901 35 1 4.3075 -0.2008 -5.0199 36 1 4.7355 0.2309 -3.3467 37 1 5.8321 2.1347 -3.3590 38 1 7.5302 3.5306 -4.4656 39 1 7.0608 4.5407 -6.6588 40 1 4.8872 4.1685 -7.7519 41 1 2.9088 1.9530 -7.3533 42 1 3.7955 2.1801 -2.3284 43 1 2.6634 3.2095 -3.2387 44 1 0.9439 1.4697 -3.1590 45 1 1.5332 1.7632 -1.5015 46 1 3.8969 0.2477 1.2718 47 1 3.8199 -1.3444 2.0640 48 1 3.8331 -1.2340 0.2874 49 1 1.9958 0.9220 2.5436 50 1 0.4379 0.0849 2.3429 51 1 0.5529 0.9042 5.9315 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083219030.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:02 Heat of formation + Delta-G solvation = -13.045941 kcal Electronic energy + Delta-G solvation = -31364.479974 eV Core-core repulsion = 27265.067480 eV Total energy + Delta-G solvation = -4099.412494 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.89623 -39.89755 -38.02655 -36.83080 -36.22240 -34.69003 -32.70200 -31.65652 -30.71463 -30.36167 -29.73775 -27.47286 -26.72652 -24.48526 -24.36072 -23.59767 -23.09062 -22.26845 -21.28610 -20.02115 -18.70977 -18.62424 -17.57397 -16.67813 -16.42323 -16.14098 -15.88368 -15.63920 -15.35683 -15.26498 -14.80914 -14.59225 -14.49463 -14.26633 -14.11625 -13.82437 -13.53591 -13.02014 -12.84595 -12.64418 -12.51486 -12.40214 -12.15397 -12.07960 -11.86728 -11.72016 -11.64695 -11.53836 -11.45191 -11.09097 -10.94663 -10.85528 -10.79189 -10.58023 -10.45509 -9.94070 -9.28988 -9.25893 -9.09745 -9.00654 -8.89411 -8.51990 -8.41337 -7.22926 -6.02519 -4.02497 0.81959 0.88491 2.90602 2.93234 3.19656 3.32388 3.39790 3.42359 3.46162 3.91652 4.42575 4.48099 4.54982 4.62566 4.67567 4.81375 4.87798 4.89453 4.95214 4.98703 5.06819 5.13146 5.21582 5.29589 5.33770 5.45268 5.47773 5.51321 5.59208 5.66515 5.68977 5.80965 5.87772 5.97351 6.00035 6.07749 6.16897 6.26330 6.32114 6.33108 6.47722 6.56930 6.64208 6.79090 6.87722 7.23775 7.29144 7.44155 7.47543 7.81236 8.05136 8.17409 8.45409 8.56354 9.05517 9.61343 11.08594 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.002256 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.500494 B =12408.830771 C =12859.485693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.067 3.933 3 H 0.047 0.953 4 C 0.525 3.475 5 O -0.517 6.517 6 N -0.623 5.623 7 C 0.120 3.880 8 C 0.046 3.954 9 N -0.493 5.493 10 C 0.062 3.938 11 C -0.132 4.132 12 C -0.120 4.120 13 C -0.107 4.107 14 C -0.144 4.144 15 C 0.131 3.869 16 O -0.485 6.485 17 C 0.047 3.953 18 C 0.112 3.888 19 N -0.518 5.518 20 C 0.037 3.963 21 C 0.191 3.809 22 C -0.503 4.503 23 H 0.065 0.935 24 C 0.054 3.946 25 N -0.900 5.900 26 Si 0.898 3.102 27 H -0.272 1.272 28 H -0.285 1.285 29 H -0.284 1.284 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.389 0.611 42 H 0.044 0.956 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.006 0.994 47 H 0.076 0.924 48 H 0.050 0.950 49 H -0.010 1.010 50 H 0.039 0.961 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.218 7.540 -26.275 28.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 H 0.065 0.935 4 C 0.313 3.687 5 O -0.390 6.390 6 N -0.360 5.360 7 C -0.003 4.003 8 C -0.081 4.081 9 N -0.215 5.215 10 C -0.032 4.032 11 C -0.152 4.152 12 C -0.139 4.139 13 C -0.125 4.125 14 C -0.163 4.163 15 C 0.086 3.914 16 O -0.294 6.294 17 C -0.080 4.080 18 C -0.012 4.012 19 N -0.243 5.243 20 C -0.111 4.111 21 C 0.066 3.934 22 C -0.542 4.542 23 H 0.083 0.917 24 C -0.147 4.147 25 N -0.540 5.540 26 Si 0.726 3.274 27 H -0.196 1.196 28 H -0.212 1.212 29 H -0.210 1.210 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.245 0.755 42 H 0.062 0.938 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.115 0.885 46 H 0.025 0.975 47 H 0.095 0.905 48 H 0.069 0.931 49 H 0.008 0.992 50 H 0.057 0.943 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.485 6.942 -26.078 28.005 hybrid contribution 1.373 0.194 1.148 1.800 sum 8.859 7.136 -24.930 27.402 Atomic orbital electron populations 1.21789 0.92280 1.04040 1.01492 1.21584 0.97381 0.95175 0.90338 0.93549 1.20909 0.76683 0.87445 0.83674 1.90661 1.49239 1.15145 1.83984 1.48259 1.63675 1.12102 1.11965 1.21567 0.94985 0.96518 0.87258 1.22588 0.96665 0.88055 1.00835 1.59566 1.36012 1.01566 1.24317 1.19202 0.90951 0.97677 0.95371 1.21660 0.93962 0.99280 1.00327 1.21086 0.99457 0.97755 0.95574 1.21081 0.96583 0.99470 0.95332 1.21419 0.93149 1.00724 1.01001 1.18309 0.85359 0.96630 0.91139 1.84823 1.29361 1.50776 1.64457 1.22560 0.97661 0.98737 0.89013 1.21899 0.96593 0.80375 1.02327 1.62009 1.08785 1.52411 1.01130 1.22258 0.88336 0.98616 1.01931 1.19867 0.96057 0.92647 0.84832 1.21193 1.36712 1.05830 0.90455 0.91724 1.24973 0.95366 0.95293 0.99020 1.69956 1.40186 1.21225 1.22630 0.86437 0.78035 0.80572 0.82380 1.19622 1.21174 1.20987 0.90953 0.90562 0.92962 0.90957 0.88577 0.89679 0.93872 0.85879 0.85731 0.85538 0.85136 0.75527 0.93812 0.89275 0.90295 0.88534 0.97533 0.90511 0.93124 0.99214 0.94287 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.55 37.16 0.32 -2.01 16 2 C 0.07 1.24 1.63 -68.87 -0.11 1.12 16 3 H 0.05 0.80 6.33 -51.93 -0.33 0.47 16 4 C 0.52 9.09 5.82 -10.99 -0.06 9.02 16 5 O -0.52 -10.77 14.83 5.56 0.08 -10.69 16 6 N -0.62 -8.28 3.01 -172.46 -0.52 -8.80 16 7 C 0.12 1.35 6.58 -3.60 -0.02 1.33 16 8 C 0.05 0.44 5.25 -3.70 -0.02 0.42 16 9 N -0.49 -4.79 4.35 -170.66 -0.74 -5.54 16 10 C 0.06 0.59 4.68 -83.56 -0.39 0.19 16 11 C -0.13 -1.16 8.73 -39.41 -0.34 -1.51 16 12 C -0.12 -0.89 10.04 -39.58 -0.40 -1.29 16 13 C -0.11 -0.72 10.04 -39.56 -0.40 -1.12 16 14 C -0.14 -1.06 9.98 -39.47 -0.39 -1.46 16 15 C 0.13 1.16 6.72 -39.08 -0.26 0.89 16 16 O -0.48 -4.09 13.25 -19.79 -0.26 -4.35 16 17 C 0.05 0.48 5.31 -3.70 -0.02 0.46 16 18 C 0.11 1.21 6.17 -3.60 -0.02 1.19 16 19 N -0.52 -11.76 4.35 -237.73 -1.04 -12.80 16 20 C 0.04 0.79 9.00 60.07 0.54 1.33 16 21 C 0.19 4.95 4.51 -4.98 -0.02 4.93 16 22 C -0.50 -14.33 8.52 -34.44 -0.29 -14.63 16 23 H 0.06 1.86 7.10 -52.49 -0.37 1.49 16 24 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 25 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 26 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 27 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.08 1.34 6.58 -51.93 -0.34 1.00 16 32 H 0.05 0.70 7.83 -51.93 -0.41 0.30 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.21 7.11 -51.93 -0.37 0.84 16 35 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.04 0.46 7.40 -51.93 -0.38 0.07 16 37 H 0.12 1.09 7.18 -52.48 -0.38 0.71 16 38 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 40 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.39 1.70 9.06 45.56 0.41 2.11 16 42 H 0.04 0.48 7.62 -51.93 -0.40 0.08 16 43 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.10 1.06 5.42 -51.93 -0.28 0.78 16 46 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 47 H 0.08 1.73 6.87 -51.93 -0.36 1.37 16 48 H 0.05 1.03 6.07 -51.93 -0.32 0.71 16 49 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 50 H 0.04 1.05 5.93 -51.93 -0.31 0.74 16 51 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 400.78 15.07 6.04 6.04 Total: -1.00 -34.26 400.78 -9.90 -44.17 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.18 Total: 0.58 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.00 Total: 0.34 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -1.56 Total: -52.98 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.18 Total: -15.04 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.26 -9.90 -44.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083219030.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.121 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds