Wall clock time and date at job start Wed Apr 1 2020 04:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46902 * 2 1 4 4 C 1.50696 * 109.47568 * 239.99878 * 2 1 3 5 5 O 1.21278 * 120.00269 * 267.03632 * 4 2 1 6 6 N 1.34779 * 119.99726 * 87.03241 * 4 2 1 7 7 C 1.47082 * 120.88170 * 175.05471 * 6 4 2 8 8 C 1.53238 * 108.52341 * 231.20860 * 7 6 4 9 9 N 1.46907 * 109.33642 * 306.17036 * 8 7 6 10 10 C 1.39966 * 110.99419 * 187.25289 * 9 8 7 11 11 C 1.38723 * 120.09400 * 300.01794 * 10 9 8 12 12 C 1.38218 * 119.98353 * 179.97438 * 11 10 9 13 13 C 1.38257 * 120.15909 * 359.97438 * 12 11 10 14 14 C 1.38279 * 120.18056 * 0.02562 * 13 12 11 15 15 C 1.38507 * 120.01688 * 0.02562 * 14 13 12 16 16 O 1.36014 * 120.07603 * 180.02562 * 15 14 13 17 17 C 1.46896 * 111.27213 * 63.10468 * 9 8 7 18 18 C 1.47084 * 120.88354 * 355.07787 * 6 4 2 19 19 N 1.46902 * 109.46949 * 119.99752 * 2 1 3 20 20 C 1.46907 * 110.99720 * 177.68758 * 19 2 1 21 21 C 1.46902 * 111.00177 * 301.64182 * 19 2 1 22 22 C 1.50693 * 109.47055 * 170.00042 * 21 19 2 23 23 H 1.08002 * 120.00126 * 0.02562 * 22 21 19 24 24 C 1.37882 * 120.00218 * 179.97438 * 22 21 19 25 25 N 1.31509 * 119.99624 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00299 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47049 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47175 * 120.00068 * 26 24 22 29 29 H 1.48500 * 109.47442 * 240.00075 * 26 24 22 30 30 H 1.09002 * 109.46705 * 187.38082 * 1 2 3 31 31 H 1.08997 * 109.47511 * 307.38745 * 1 2 3 32 32 H 1.08997 * 109.47140 * 67.38926 * 1 2 3 33 33 H 1.08999 * 109.62981 * 111.49491 * 7 6 4 34 34 H 1.09005 * 109.78736 * 351.00961 * 7 6 4 35 35 H 1.08996 * 109.49684 * 186.21209 * 8 7 6 36 36 H 1.09000 * 109.51327 * 66.13892 * 8 7 6 37 37 H 1.08003 * 120.00809 * 359.96186 * 11 10 9 38 38 H 1.08003 * 119.92125 * 179.97438 * 12 11 10 39 39 H 1.08007 * 119.90874 * 180.27686 * 13 12 11 40 40 H 1.08005 * 119.99244 * 179.97438 * 14 13 12 41 41 H 0.96695 * 114.00551 * 89.99759 * 16 15 14 42 42 H 1.09001 * 109.49016 * 56.85156 * 17 9 8 43 43 H 1.08999 * 109.49671 * 176.93049 * 17 9 8 44 44 H 1.08996 * 109.62940 * 248.50259 * 18 6 4 45 45 H 1.09003 * 109.62453 * 9.08162 * 18 6 4 46 46 H 1.08997 * 109.46630 * 64.37182 * 20 19 2 47 47 H 1.09003 * 109.46557 * 184.36686 * 20 19 2 48 48 H 1.08999 * 109.46979 * 304.36735 * 20 19 2 49 49 H 1.08999 * 109.47085 * 290.00155 * 21 19 2 50 50 H 1.08998 * 109.46806 * 49.99978 * 21 19 2 51 51 H 0.96996 * 120.00291 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2858 -1.8956 -1.1854 6 7 2.2001 -0.0286 -2.3809 7 6 2.7903 -0.6755 -3.5626 8 6 3.9309 0.2064 -4.0816 9 7 3.4292 1.5690 -4.3049 10 6 4.3962 2.3628 -4.9324 11 6 5.6225 2.5788 -4.3209 12 6 6.5760 3.3627 -4.9428 13 6 6.3111 3.9325 -6.1744 14 6 5.0910 3.7216 -6.7900 15 6 4.1298 2.9382 -6.1729 16 8 2.9295 2.7296 -6.7776 17 6 2.9779 2.1832 -3.0492 18 6 1.7982 1.3822 -2.4878 19 7 2.0196 -0.6925 1.1995 20 6 3.4871 -0.7602 1.2061 21 6 1.5168 -0.0494 2.4208 22 6 1.8302 -0.9182 3.6115 23 1 2.3513 -1.8542 3.4748 24 6 1.4528 -0.5176 4.8757 25 7 0.8188 0.6225 5.0423 26 14 1.8407 -1.5949 6.3516 27 1 2.5545 -2.8160 5.8992 28 1 2.6999 -0.8430 7.3011 29 1 0.5765 -1.9818 7.0280 30 1 -0.3633 -1.0192 0.1320 31 1 -0.3634 0.6240 0.8165 32 1 -0.3633 0.3951 -0.9487 33 1 2.0313 -0.7859 -4.3370 34 1 3.1806 -1.6561 -3.2901 35 1 4.3075 -0.2008 -5.0199 36 1 4.7355 0.2309 -3.3467 37 1 5.8321 2.1347 -3.3590 38 1 7.5302 3.5306 -4.4656 39 1 7.0608 4.5407 -6.6588 40 1 4.8872 4.1685 -7.7519 41 1 2.9088 1.9530 -7.3533 42 1 3.7955 2.1801 -2.3284 43 1 2.6634 3.2095 -3.2387 44 1 0.9439 1.4697 -3.1590 45 1 1.5332 1.7632 -1.5015 46 1 3.8969 0.2477 1.2718 47 1 3.8199 -1.3444 2.0640 48 1 3.8331 -1.2340 0.2874 49 1 1.9958 0.9220 2.5436 50 1 0.4379 0.0849 2.3429 51 1 0.5529 0.9042 5.9315 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083219030.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:01 Heat of formation + Delta-G solvation = -37.977802 kcal Electronic energy + Delta-G solvation = -31365.561101 eV Core-core repulsion = 27265.067480 eV Total energy + Delta-G solvation = -4100.493621 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.80277 -40.93098 -39.01518 -37.88918 -37.39203 -35.71430 -34.76698 -32.83905 -31.82537 -31.15726 -30.49728 -29.45623 -27.68191 -26.33381 -25.57135 -24.68525 -23.91694 -23.10603 -22.52391 -21.29817 -19.84445 -19.31840 -18.82317 -18.35593 -17.49236 -17.13208 -16.77997 -16.71293 -16.50334 -16.41196 -16.07691 -16.01286 -15.51162 -15.33474 -15.15855 -14.95393 -14.76687 -14.49392 -14.17651 -13.82662 -13.66770 -13.48022 -13.26577 -13.20390 -13.07713 -12.87928 -12.80002 -12.68919 -12.64993 -12.49173 -12.41494 -12.38586 -12.29637 -12.28239 -11.90613 -11.41337 -11.31850 -10.69357 -10.53691 -9.93071 -9.85499 -9.52695 -9.45143 -9.04013 -8.21129 -6.29318 0.22854 0.31188 1.39473 1.40696 1.52759 1.55220 1.81158 2.40511 2.60616 2.67901 3.11154 3.20830 3.37533 3.42727 3.75085 3.88999 3.93904 3.99589 4.08901 4.12069 4.13849 4.18604 4.24240 4.36456 4.40254 4.44559 4.51332 4.54960 4.58450 4.64429 4.70433 4.76944 4.79612 4.84999 4.94705 4.95723 4.99840 5.15349 5.20779 5.27932 5.33794 5.40461 5.42644 5.51613 5.64177 5.74941 5.78485 6.01468 6.17847 6.25074 6.28878 6.57330 6.84622 6.97229 7.15536 7.39311 8.89886 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.002256 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.500494 B =12408.830771 C =12859.485693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.063 3.937 3 H 0.062 0.938 4 C 0.529 3.471 5 O -0.559 6.559 6 N -0.613 5.613 7 C 0.120 3.880 8 C 0.055 3.945 9 N -0.489 5.489 10 C 0.044 3.956 11 C -0.143 4.143 12 C -0.126 4.126 13 C -0.102 4.102 14 C -0.147 4.147 15 C 0.124 3.876 16 O -0.497 6.497 17 C 0.052 3.948 18 C 0.110 3.890 19 N -0.536 5.536 20 C 0.047 3.953 21 C 0.208 3.792 22 C -0.525 4.525 23 H 0.054 0.946 24 C 0.006 3.994 25 N -0.929 5.929 26 Si 0.965 3.035 27 H -0.270 1.270 28 H -0.276 1.276 29 H -0.276 1.276 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.031 0.969 37 H 0.115 0.885 38 H 0.140 0.860 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.405 0.595 42 H 0.033 0.967 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.013 0.987 47 H 0.058 0.942 48 H 0.059 0.941 49 H -0.032 1.032 50 H 0.026 0.974 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.814 8.448 -28.058 30.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.049 4.049 3 H 0.080 0.920 4 C 0.317 3.683 5 O -0.436 6.436 6 N -0.347 5.347 7 C -0.003 4.003 8 C -0.072 4.072 9 N -0.211 5.211 10 C -0.051 4.051 11 C -0.163 4.163 12 C -0.145 4.145 13 C -0.120 4.120 14 C -0.166 4.166 15 C 0.079 3.921 16 O -0.309 6.309 17 C -0.076 4.076 18 C -0.013 4.013 19 N -0.261 5.261 20 C -0.101 4.101 21 C 0.083 3.917 22 C -0.563 4.563 23 H 0.073 0.927 24 C -0.192 4.192 25 N -0.570 5.570 26 Si 0.790 3.210 27 H -0.194 1.194 28 H -0.202 1.202 29 H -0.202 1.202 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.122 0.878 36 H 0.049 0.951 37 H 0.133 0.867 38 H 0.158 0.842 39 H 0.170 0.830 40 H 0.166 0.834 41 H 0.263 0.737 42 H 0.051 0.949 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.032 0.968 47 H 0.077 0.923 48 H 0.078 0.922 49 H -0.015 1.015 50 H 0.044 0.956 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.087 7.880 -27.918 30.115 hybrid contribution 1.210 -0.004 1.556 1.971 sum 9.297 7.875 -26.362 29.041 Atomic orbital electron populations 1.21730 0.91232 1.02776 1.03121 1.21691 0.98295 0.95638 0.89240 0.92022 1.20597 0.76574 0.86835 0.84320 1.90644 1.51504 1.16751 1.84749 1.48244 1.62284 1.12932 1.11280 1.21701 0.95895 0.96120 0.86557 1.22498 0.95406 0.88063 1.01259 1.59560 1.36339 1.01480 1.23715 1.19276 0.91150 0.98655 0.95971 1.21685 0.94356 0.99982 1.00289 1.21328 0.99805 0.97352 0.95980 1.21406 0.96892 0.98866 0.94854 1.21664 0.93013 1.00227 1.01663 1.18445 0.85729 0.96885 0.91073 1.84775 1.29412 1.51897 1.64855 1.22495 0.96923 0.98999 0.89148 1.22080 0.97574 0.78773 1.02854 1.61867 1.09499 1.53163 1.01594 1.22127 0.87787 0.98715 1.01511 1.19507 0.95011 0.91308 0.85918 1.21451 1.37051 1.05879 0.91910 0.92742 1.25803 0.94989 0.96587 1.01832 1.70052 1.40740 1.22575 1.23595 0.85394 0.78106 0.78768 0.78713 1.19419 1.20170 1.20178 0.92930 0.91712 0.89147 0.89317 0.90020 0.87827 0.95111 0.86693 0.84241 0.83009 0.83442 0.73691 0.94898 0.88496 0.88500 0.88617 0.96843 0.92324 0.92207 1.01484 0.95559 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 8.55 71.98 0.62 -3.78 16 2 C 0.06 2.32 1.63 44.17 0.07 2.39 16 3 H 0.06 2.10 6.33 -2.39 -0.02 2.09 16 4 C 0.53 18.23 5.82 87.66 0.51 18.74 16 5 O -0.56 -23.62 14.83 -3.02 -0.04 -23.66 16 6 N -0.61 -15.66 3.01 -817.92 -2.46 -18.12 16 7 C 0.12 2.57 6.58 86.35 0.57 3.13 16 8 C 0.06 0.99 5.25 86.38 0.45 1.44 16 9 N -0.49 -8.77 4.35 -693.83 -3.02 -11.79 16 10 C 0.04 0.76 4.68 38.22 0.18 0.94 16 11 C -0.14 -2.37 8.73 22.38 0.20 -2.18 16 12 C -0.13 -1.64 10.04 22.27 0.22 -1.42 16 13 C -0.10 -1.11 10.04 22.28 0.22 -0.89 16 14 C -0.15 -1.80 9.98 22.34 0.22 -1.58 16 15 C 0.12 1.95 6.72 22.59 0.15 2.10 16 16 O -0.50 -7.36 13.25 -93.71 -1.24 -8.60 16 17 C 0.05 0.98 5.31 86.38 0.46 1.44 16 18 C 0.11 2.19 6.17 86.35 0.53 2.73 16 19 N -0.54 -24.96 4.35 -906.04 -3.95 -28.91 16 20 C 0.05 2.05 9.00 127.69 1.15 3.20 16 21 C 0.21 11.16 4.51 85.55 0.39 11.55 16 22 C -0.52 -30.58 8.52 25.60 0.22 -30.36 16 23 H 0.05 3.22 7.10 -2.91 -0.02 3.20 16 24 C 0.01 0.36 5.46 84.66 0.46 0.82 16 25 N -0.93 -55.45 13.29 21.45 0.28 -55.17 16 26 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 27 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 28 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 29 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 2.31 6.58 -2.39 -0.02 2.29 16 32 H 0.09 2.29 7.83 -2.39 -0.02 2.27 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 2.04 7.11 -2.38 -0.02 2.02 16 35 H 0.10 1.50 8.09 -2.39 -0.02 1.48 16 36 H 0.03 0.64 7.40 -2.39 -0.02 0.62 16 37 H 0.12 2.02 7.18 -2.91 -0.02 2.00 16 38 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.15 0.84 8.06 -2.91 -0.02 0.81 16 40 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.40 2.69 9.06 -74.06 -0.67 2.02 16 42 H 0.03 0.70 7.62 -2.39 -0.02 0.68 16 43 H 0.10 1.72 8.09 -2.39 -0.02 1.70 16 44 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.10 1.95 5.42 -2.39 -0.01 1.94 16 46 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.06 2.73 6.87 -2.39 -0.02 2.71 16 48 H 0.06 2.48 6.07 -2.39 -0.01 2.47 16 49 H -0.03 -1.85 8.12 -2.39 -0.02 -1.87 16 50 H 0.03 1.47 5.93 -2.39 -0.01 1.45 16 51 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -74.36 400.78 -1.51 -75.87 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.27 Total: 14.86 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 6.62 Total: 8.27 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -9.14 Total: -113.98 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -1.29 Total: -32.27 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -74.36 -1.51 -75.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083219030.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.892 kcal (2) G-P(sol) polarization free energy of solvation -74.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds