Wall clock time and date at job start Wed Apr 1 2020 04:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47087 * 2 1 4 4 C 1.53004 * 109.47011 * 119.99655 * 2 1 3 5 5 N 1.46504 * 109.47013 * 175.00446 * 4 2 1 6 6 C 1.34776 * 119.99835 * 180.02562 * 5 4 2 7 7 O 1.21586 * 120.00194 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99844 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00093 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47192 * 180.02562 * 9 8 6 11 11 C 1.38328 * 119.96230 * 269.98024 * 10 9 8 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47010 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46908 * 119.99967 * 20 18 16 23 23 H 1.48504 * 109.47373 * 240.00300 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99825 * 10 9 8 25 25 N 1.46903 * 109.47331 * 239.99545 * 2 1 3 26 26 C 1.46894 * 110.99939 * 306.04383 * 25 2 1 27 27 C 1.46897 * 110.99873 * 69.99927 * 25 2 1 28 28 C 1.53000 * 117.50091 * 243.74655 * 27 25 2 29 29 C 1.52998 * 117.50144 * 175.08912 * 27 25 2 30 30 H 1.08997 * 109.47010 * 300.00093 * 1 2 3 31 31 H 1.08995 * 109.46907 * 60.00458 * 1 2 3 32 32 H 1.08999 * 109.46959 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47025 * 55.00195 * 4 2 1 34 34 H 1.08995 * 109.46911 * 294.99926 * 4 2 1 35 35 H 0.97005 * 119.99925 * 359.97438 * 5 4 2 36 36 H 0.97004 * 119.99718 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.46490 * 60.00223 * 9 8 6 38 38 H 1.08992 * 109.46880 * 300.00477 * 9 8 6 39 39 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 40 40 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 41 41 H 1.08006 * 120.03715 * 180.31908 * 13 12 11 42 42 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 43 43 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 44 44 H 1.09009 * 109.46910 * 59.99984 * 26 25 2 45 45 H 1.09002 * 109.46854 * 179.97438 * 26 25 2 46 46 H 1.08995 * 109.47525 * 300.00220 * 26 25 2 47 47 H 1.08999 * 115.54944 * 29.41822 * 27 25 2 48 48 H 1.09001 * 117.49383 * 0.02562 * 28 27 25 49 49 H 1.09000 * 117.49590 * 145.01770 * 28 27 25 50 50 H 1.09001 * 117.49839 * 214.98301 * 29 27 25 51 51 H 1.08998 * 117.49578 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8262 1.1907 6 6 4.1730 -1.4290 2.1909 7 8 3.5684 -1.8851 3.1420 8 7 5.5162 -1.5261 2.1367 9 6 6.2478 -2.1807 3.2241 10 6 7.7241 -2.1563 2.9225 11 6 8.3025 -3.1966 2.2178 12 6 9.6569 -3.1780 1.9395 13 6 10.4351 -2.1169 2.3590 14 6 9.8585 -1.0738 3.0714 15 8 10.6219 -0.0324 3.4903 16 6 11.9516 -0.1280 3.2885 17 1 12.3557 -0.9664 2.7406 18 6 12.8001 0.8501 3.7844 19 7 12.3079 1.8710 4.4522 20 14 14.6424 0.7172 3.5055 21 1 14.9383 -0.5155 2.7321 22 1 15.1148 1.9027 2.7461 23 1 15.3386 0.6590 4.8159 24 6 8.4979 -1.0957 3.3501 25 7 2.0197 -0.6926 -1.1994 26 6 1.4344 -2.0356 -1.3076 27 6 1.7530 0.0970 -2.4090 28 6 0.8026 -0.5014 -3.4480 29 6 2.3047 -0.4324 -3.7342 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7197 1.2953 34 1 1.7516 -0.1582 2.1369 35 1 3.9824 -0.4626 0.4317 36 1 5.9986 -1.1618 1.3780 37 1 5.9126 -3.2138 3.3171 38 1 6.0594 -1.6521 4.1585 39 1 7.6951 -4.0250 1.8843 40 1 10.1057 -3.9919 1.3895 41 1 11.4920 -2.1004 2.1369 42 1 12.9016 2.5550 4.7995 43 1 8.0457 -0.2841 3.9008 44 1 0.3491 -1.9550 -1.3692 45 1 1.8135 -2.5259 -2.2043 46 1 1.7060 -2.6221 -0.4300 47 1 1.7300 1.1778 -2.2693 48 1 0.3750 -1.4809 -3.2338 49 1 0.1546 0.1857 -3.9921 50 1 2.6443 0.3001 -4.4665 51 1 2.8659 -1.3664 -3.7084 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113616421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:44 Heat of formation + Delta-G solvation = 6.609175 kcal Electronic energy + Delta-G solvation = -29550.802104 eV Core-core repulsion = 25452.241920 eV Total energy + Delta-G solvation = -4098.560185 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.21898 -39.50322 -38.97639 -36.86580 -36.13442 -34.33274 -33.62093 -32.31611 -30.88298 -30.31071 -29.09723 -27.02095 -26.86849 -25.54077 -24.73018 -22.72936 -21.79609 -21.67153 -20.85601 -20.67231 -19.90388 -18.39166 -17.57487 -17.43515 -17.03005 -16.39572 -15.63294 -15.52320 -15.29114 -15.04715 -14.65676 -14.46735 -14.42437 -14.16403 -14.03252 -13.59783 -13.47129 -13.35748 -13.10854 -12.76335 -12.63539 -12.44468 -12.34753 -12.32432 -12.07886 -11.89214 -11.70000 -11.64638 -11.36081 -11.24010 -11.10805 -10.93083 -10.78110 -10.68021 -10.66067 -10.45150 -10.09981 -9.38562 -9.17323 -8.88230 -8.65389 -8.54956 -8.21807 -7.30286 -6.47744 -4.07086 1.91286 2.29604 2.92917 3.10764 3.12180 3.17600 3.21016 3.38125 3.60927 3.93755 4.26817 4.39141 4.47210 4.51202 4.58463 4.64850 4.72949 4.84613 4.86020 4.97853 5.09258 5.10304 5.21457 5.24153 5.28980 5.32506 5.41001 5.42029 5.56117 5.58651 5.61026 5.66846 5.73303 5.76649 5.82012 5.88787 5.99000 6.10677 6.28433 6.46755 6.58765 6.60502 6.65366 6.68043 6.84966 7.01211 7.10028 7.23010 7.30465 7.38176 7.73933 7.96648 8.18520 8.75644 8.97812 9.67069 10.70165 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.001818 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.883679 B =15401.631708 C =15914.608025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.068 3.932 3 H 0.092 0.908 4 C 0.150 3.850 5 N -0.738 5.738 6 C 0.702 3.298 7 O -0.602 6.602 8 N -0.737 5.737 9 C 0.188 3.812 10 C -0.072 4.072 11 C -0.193 4.193 12 C -0.077 4.077 13 C -0.226 4.226 14 C 0.150 3.850 15 O -0.177 6.177 16 C -0.392 4.392 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.170 4.170 25 N -0.501 5.501 26 C 0.013 3.987 27 C 0.022 3.978 28 C -0.220 4.220 29 C -0.170 4.170 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.403 0.597 36 H 0.399 0.601 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.127 0.873 42 H 0.270 0.730 43 H 0.118 0.882 44 H 0.038 0.962 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.117 0.883 48 H 0.099 0.901 49 H 0.092 0.908 50 H 0.097 0.903 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.564 -4.627 -14.114 26.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.041 4.041 3 H 0.110 0.890 4 C 0.025 3.975 5 N -0.394 5.394 6 C 0.402 3.598 7 O -0.481 6.481 8 N -0.391 5.391 9 C 0.064 3.936 10 C -0.072 4.072 11 C -0.213 4.213 12 C -0.095 4.095 13 C -0.245 4.245 14 C 0.096 3.904 15 O -0.081 6.081 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.190 4.190 25 N -0.222 5.222 26 C -0.134 4.134 27 C -0.087 4.087 28 C -0.259 4.259 29 C -0.208 4.208 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.238 0.762 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.080 0.920 43 H 0.136 0.864 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.135 0.865 48 H 0.117 0.883 49 H 0.110 0.890 50 H 0.115 0.885 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.565 -4.682 -12.907 25.565 hybrid contribution 0.623 0.310 -1.055 1.264 sum -20.941 -4.372 -13.962 25.546 Atomic orbital electron populations 1.22379 0.96000 1.02839 1.02857 1.22054 0.93757 0.98685 0.89608 0.89032 1.21159 0.79719 1.00454 0.96157 1.44897 1.07049 1.63586 1.23884 1.15966 0.81801 0.79180 0.82842 1.90901 1.68063 1.54569 1.34563 1.45229 1.04738 1.63450 1.25722 1.19969 0.86884 0.97522 0.89213 1.19292 0.93462 0.95017 0.99461 1.20488 0.95034 0.99814 1.05954 1.20743 0.93581 0.97024 0.98176 1.21235 1.01056 0.96479 1.05759 1.19331 0.91215 0.87650 0.92189 1.83983 1.19276 1.34720 1.70071 1.21369 0.78655 1.10291 1.36529 0.88999 1.25297 1.00334 0.95008 0.95904 1.70044 1.35843 1.10250 1.33458 0.85645 0.80656 0.78663 0.78443 1.19098 1.20146 1.20120 1.20099 0.91679 1.00140 1.07046 1.62018 1.56950 1.02456 1.00781 1.22578 0.97654 0.90208 1.03009 1.22628 1.02809 0.97082 0.86160 1.23560 0.93616 1.03524 1.05162 1.23073 0.95695 1.03614 0.98386 0.91504 0.91883 0.91810 0.91848 0.91227 0.76185 0.76727 0.91250 0.91139 0.87508 0.87333 0.85507 0.92031 0.86385 0.94387 0.91332 0.90785 0.86483 0.88296 0.89001 0.88476 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 8.48 37.16 0.32 -0.68 16 2 C 0.07 0.45 2.44 -67.71 -0.17 0.28 16 3 H 0.09 0.59 7.96 -51.93 -0.41 0.18 16 4 C 0.15 1.37 4.84 -4.04 -0.02 1.35 16 5 N -0.74 -7.90 5.39 -65.22 -0.35 -8.26 16 6 C 0.70 10.13 8.57 -86.91 -0.74 9.39 16 7 O -0.60 -10.95 16.34 5.29 0.09 -10.86 16 8 N -0.74 -10.13 5.55 -66.42 -0.37 -10.50 16 9 C 0.19 2.87 5.80 -5.19 -0.03 2.84 16 10 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 11 C -0.19 -3.20 9.70 -39.53 -0.38 -3.59 16 12 C -0.08 -1.36 10.04 -39.61 -0.40 -1.75 16 13 C -0.23 -4.74 9.17 -39.40 -0.36 -5.11 16 14 C 0.15 3.52 6.65 -39.11 -0.26 3.26 16 15 O -0.18 -4.96 9.76 0.05 0.00 -4.96 16 16 C -0.39 -10.78 9.49 30.89 0.29 -10.49 16 17 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -25.02 13.67 55.48 0.76 -24.26 16 20 Si 0.94 20.27 29.55 -169.99 -5.02 15.25 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 C -0.17 -3.47 9.65 -39.39 -0.38 -3.85 16 25 N -0.50 -3.43 4.36 -226.91 -0.99 -4.42 16 26 C 0.01 0.09 7.41 60.06 0.45 0.53 16 27 C 0.02 0.14 5.20 -67.72 -0.35 -0.21 16 28 C -0.22 -1.23 9.51 -26.70 -0.25 -1.48 16 29 C -0.17 -1.05 9.99 -26.70 -0.27 -1.32 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.33 7.52 -51.93 -0.39 -0.06 16 32 H 0.06 0.36 6.33 -51.93 -0.33 0.03 16 33 H 0.06 0.63 6.80 -51.93 -0.35 0.28 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.40 3.76 8.15 -40.82 -0.33 3.43 16 36 H 0.40 4.93 8.48 -40.82 -0.35 4.58 16 37 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 38 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 41 H 0.13 2.68 5.64 -52.48 -0.30 2.38 16 42 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 44 H 0.04 0.23 5.31 -51.92 -0.28 -0.05 16 45 H 0.07 0.45 6.63 -51.93 -0.34 0.11 16 46 H 0.07 0.58 6.58 -51.93 -0.34 0.24 16 47 H 0.12 0.67 7.93 -51.93 -0.41 0.26 16 48 H 0.10 0.56 5.89 -51.93 -0.31 0.25 16 49 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.10 0.66 7.56 -51.93 -0.39 0.27 16 LS Contribution 410.81 15.07 6.19 6.19 Total: -1.00 -32.03 410.81 -10.64 -42.67 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -7.74 Total: 10.79 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -3.21 Total: -11.64 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.95 Total: -47.44 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.09 Total: -15.82 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.03 -10.64 -42.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113616421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.280 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds