Wall clock time and date at job start Wed Apr 1 2020 04:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47087 * 2 1 4 4 C 1.53004 * 109.47011 * 119.99655 * 2 1 3 5 5 N 1.46504 * 109.47013 * 175.00446 * 4 2 1 6 6 C 1.34776 * 119.99835 * 180.02562 * 5 4 2 7 7 O 1.21586 * 120.00194 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99844 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00093 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47192 * 180.02562 * 9 8 6 11 11 C 1.38328 * 119.96230 * 269.98024 * 10 9 8 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47010 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46908 * 119.99967 * 20 18 16 23 23 H 1.48504 * 109.47373 * 240.00300 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99825 * 10 9 8 25 25 N 1.46903 * 109.47331 * 239.99545 * 2 1 3 26 26 C 1.46894 * 110.99939 * 306.04383 * 25 2 1 27 27 C 1.46897 * 110.99873 * 69.99927 * 25 2 1 28 28 C 1.53000 * 117.50091 * 243.74655 * 27 25 2 29 29 C 1.52998 * 117.50144 * 175.08912 * 27 25 2 30 30 H 1.08997 * 109.47010 * 300.00093 * 1 2 3 31 31 H 1.08995 * 109.46907 * 60.00458 * 1 2 3 32 32 H 1.08999 * 109.46959 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47025 * 55.00195 * 4 2 1 34 34 H 1.08995 * 109.46911 * 294.99926 * 4 2 1 35 35 H 0.97005 * 119.99925 * 359.97438 * 5 4 2 36 36 H 0.97004 * 119.99718 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.46490 * 60.00223 * 9 8 6 38 38 H 1.08992 * 109.46880 * 300.00477 * 9 8 6 39 39 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 40 40 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 41 41 H 1.08006 * 120.03715 * 180.31908 * 13 12 11 42 42 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 43 43 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 44 44 H 1.09009 * 109.46910 * 59.99984 * 26 25 2 45 45 H 1.09002 * 109.46854 * 179.97438 * 26 25 2 46 46 H 1.08995 * 109.47525 * 300.00220 * 26 25 2 47 47 H 1.08999 * 115.54944 * 29.41822 * 27 25 2 48 48 H 1.09001 * 117.49383 * 0.02562 * 28 27 25 49 49 H 1.09000 * 117.49590 * 145.01770 * 28 27 25 50 50 H 1.09001 * 117.49839 * 214.98301 * 29 27 25 51 51 H 1.08998 * 117.49578 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8262 1.1907 6 6 4.1730 -1.4290 2.1909 7 8 3.5684 -1.8851 3.1420 8 7 5.5162 -1.5261 2.1367 9 6 6.2478 -2.1807 3.2241 10 6 7.7241 -2.1563 2.9225 11 6 8.3025 -3.1966 2.2178 12 6 9.6569 -3.1780 1.9395 13 6 10.4351 -2.1169 2.3590 14 6 9.8585 -1.0738 3.0714 15 8 10.6219 -0.0324 3.4903 16 6 11.9516 -0.1280 3.2885 17 1 12.3557 -0.9664 2.7406 18 6 12.8001 0.8501 3.7844 19 7 12.3079 1.8710 4.4522 20 14 14.6424 0.7172 3.5055 21 1 14.9383 -0.5155 2.7321 22 1 15.1148 1.9027 2.7461 23 1 15.3386 0.6590 4.8159 24 6 8.4979 -1.0957 3.3501 25 7 2.0197 -0.6926 -1.1994 26 6 1.4344 -2.0356 -1.3076 27 6 1.7530 0.0970 -2.4090 28 6 0.8026 -0.5014 -3.4480 29 6 2.3047 -0.4324 -3.7342 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7197 1.2953 34 1 1.7516 -0.1582 2.1369 35 1 3.9824 -0.4626 0.4317 36 1 5.9986 -1.1618 1.3780 37 1 5.9126 -3.2138 3.3171 38 1 6.0594 -1.6521 4.1585 39 1 7.6951 -4.0250 1.8843 40 1 10.1057 -3.9919 1.3895 41 1 11.4920 -2.1004 2.1369 42 1 12.9016 2.5550 4.7995 43 1 8.0457 -0.2841 3.9008 44 1 0.3491 -1.9550 -1.3692 45 1 1.8135 -2.5259 -2.2043 46 1 1.7060 -2.6221 -0.4300 47 1 1.7300 1.1778 -2.2693 48 1 0.3750 -1.4809 -3.2338 49 1 0.1546 0.1857 -3.9921 50 1 2.6443 0.3001 -4.4665 51 1 2.8659 -1.3664 -3.7084 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113616421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:43 Heat of formation + Delta-G solvation = -15.371303 kcal Electronic energy + Delta-G solvation = -29551.755249 eV Core-core repulsion = 25452.241920 eV Total energy + Delta-G solvation = -4099.513330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.22076 -40.73642 -40.12580 -38.48829 -36.86899 -35.65300 -34.50259 -34.26129 -32.16328 -31.06221 -30.68227 -27.93948 -27.53177 -27.28118 -26.02782 -23.25058 -23.17693 -22.50537 -22.29989 -21.84267 -20.46005 -19.77713 -19.16078 -18.63748 -17.97874 -17.46330 -16.83090 -16.63430 -16.27071 -16.20311 -16.09204 -15.80803 -15.55989 -15.32842 -15.22368 -15.01373 -14.65158 -14.33740 -14.03152 -13.92414 -13.78927 -13.64321 -13.34263 -13.18773 -13.01910 -12.92157 -12.83265 -12.54673 -12.47676 -12.33493 -12.26105 -12.17080 -12.07775 -11.81064 -11.59022 -11.37661 -11.18989 -11.15299 -10.81096 -10.32758 -9.75756 -9.68293 -9.07028 -9.01987 -8.46200 -6.14540 0.38926 0.71967 1.36399 1.44194 1.54534 1.87070 2.18018 2.21388 2.68010 2.83520 3.10907 3.15604 3.40000 3.50263 3.75227 3.85591 3.97325 4.03164 4.11336 4.12620 4.20696 4.30324 4.32841 4.33087 4.45158 4.54946 4.59118 4.63418 4.67176 4.72972 4.75032 4.80457 4.82899 4.92909 5.02002 5.03727 5.08971 5.13257 5.16012 5.27371 5.27522 5.28302 5.46496 5.58681 5.63996 5.72115 5.74012 6.02378 6.06387 6.06880 6.13711 6.18751 6.98713 7.14843 7.63508 7.79423 8.77145 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.001818 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.883679 B =15401.631708 C =15914.608025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.077 3.923 3 H 0.097 0.903 4 C 0.150 3.850 5 N -0.722 5.722 6 C 0.700 3.300 7 O -0.640 6.640 8 N -0.731 5.731 9 C 0.195 3.805 10 C -0.057 4.057 11 C -0.167 4.167 12 C -0.070 4.070 13 C -0.233 4.233 14 C 0.112 3.888 15 O -0.232 6.232 16 C -0.411 4.411 17 H 0.104 0.896 18 C -0.025 4.025 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.250 1.250 22 H -0.269 1.269 23 H -0.271 1.271 24 C -0.180 4.180 25 N -0.509 5.509 26 C 0.017 3.983 27 C 0.018 3.982 28 C -0.211 4.211 29 C -0.176 4.176 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.412 0.588 36 H 0.407 0.593 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.121 0.879 42 H 0.272 0.728 43 H 0.107 0.893 44 H 0.046 0.954 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.124 0.876 48 H 0.098 0.902 49 H 0.100 0.900 50 H 0.102 0.898 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.455 -6.625 -16.366 28.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.032 4.032 3 H 0.115 0.885 4 C 0.025 3.975 5 N -0.378 5.378 6 C 0.400 3.600 7 O -0.522 6.522 8 N -0.386 5.386 9 C 0.071 3.929 10 C -0.058 4.058 11 C -0.186 4.186 12 C -0.088 4.088 13 C -0.253 4.253 14 C 0.062 3.938 15 O -0.139 6.139 16 C -0.487 4.487 17 H 0.121 0.879 18 C -0.222 4.222 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.173 1.173 22 H -0.194 1.194 23 H -0.196 1.196 24 C -0.200 4.200 25 N -0.230 5.230 26 C -0.131 4.131 27 C -0.091 4.091 28 C -0.250 4.250 29 C -0.213 4.213 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.249 0.751 36 H 0.243 0.757 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.165 0.835 40 H 0.167 0.833 41 H 0.138 0.862 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.142 0.858 48 H 0.117 0.883 49 H 0.118 0.882 50 H 0.121 0.879 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.496 -6.707 -15.225 27.980 hybrid contribution 0.602 0.718 -0.453 1.041 sum -21.895 -5.989 -15.679 27.587 Atomic orbital electron populations 1.22325 0.94878 1.02910 1.03397 1.21956 0.94482 0.98377 0.88392 0.88469 1.21260 0.78551 1.00331 0.97350 1.44831 1.07713 1.62191 1.23054 1.16098 0.81766 0.79173 0.82983 1.90877 1.68786 1.56339 1.36240 1.45049 1.04650 1.63370 1.25548 1.19832 0.85579 0.98260 0.89265 1.19440 0.94162 0.93903 0.98255 1.20990 0.94968 0.99718 1.02925 1.21156 0.93751 0.96614 0.97236 1.21365 1.01289 0.96928 1.05705 1.19853 0.92079 0.88207 0.93697 1.83950 1.19791 1.37344 1.72824 1.21866 0.79148 1.10901 1.36808 0.87880 1.26593 1.05737 0.94396 0.95479 1.70192 1.37866 1.11783 1.36089 0.84526 0.73647 0.79367 0.78651 1.17276 1.19417 1.19576 1.20220 0.91059 1.01167 1.07550 1.61985 1.57293 1.02621 1.01120 1.22520 0.98186 0.90023 1.02342 1.22682 1.03283 0.97345 0.85811 1.23564 0.93320 1.03586 1.04553 1.23095 0.96200 1.03443 0.98610 0.91126 0.91160 0.91966 0.92557 0.91916 0.75136 0.75750 0.89928 0.92317 0.83526 0.83350 0.86162 0.91908 0.87514 0.93544 0.91318 0.92069 0.85805 0.88333 0.88188 0.87919 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 8.48 71.98 0.61 -1.01 16 2 C 0.08 0.89 2.44 44.92 0.11 1.00 16 3 H 0.10 1.06 7.96 -2.39 -0.02 1.04 16 4 C 0.15 2.59 4.84 86.38 0.42 3.01 16 5 N -0.72 -14.56 5.39 -478.53 -2.58 -17.14 16 6 C 0.70 19.38 8.57 179.05 1.53 20.91 16 7 O -0.64 -22.87 16.34 -3.99 -0.07 -22.93 16 8 N -0.73 -18.88 5.55 -482.30 -2.68 -21.56 16 9 C 0.19 5.61 5.80 85.63 0.50 6.10 16 10 C -0.06 -1.85 5.25 -19.88 -0.10 -1.95 16 11 C -0.17 -4.84 9.70 22.30 0.22 -4.62 16 12 C -0.07 -2.21 10.04 22.25 0.22 -1.99 16 13 C -0.23 -9.67 9.17 22.39 0.21 -9.46 16 14 C 0.11 5.41 6.65 22.58 0.15 5.56 16 15 O -0.23 -13.78 9.76 -22.74 -0.22 -14.01 16 16 C -0.41 -23.58 9.49 67.92 0.64 -22.93 16 17 H 0.10 5.38 5.21 -2.91 -0.02 5.37 16 18 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 19 N -0.92 -56.37 13.67 21.61 0.30 -56.08 16 20 Si 1.02 42.43 29.55 68.60 2.03 44.46 16 21 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 C -0.18 -7.48 9.65 22.39 0.22 -7.27 16 25 N -0.51 -6.12 4.36 -871.81 -3.80 -9.92 16 26 C 0.02 0.20 7.41 127.69 0.95 1.15 16 27 C 0.02 0.19 5.20 44.92 0.23 0.42 16 28 C -0.21 -1.94 9.51 30.62 0.29 -1.65 16 29 C -0.18 -1.89 9.99 30.62 0.31 -1.58 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.58 7.52 -2.39 -0.02 0.56 16 32 H 0.06 0.60 6.33 -2.39 -0.02 0.59 16 33 H 0.06 1.08 6.80 -2.39 -0.02 1.06 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.41 6.99 8.15 -92.70 -0.76 6.23 16 36 H 0.41 9.25 8.48 -92.71 -0.79 8.46 16 37 H 0.08 2.23 8.09 -2.39 -0.02 2.21 16 38 H 0.06 1.86 8.08 -2.39 -0.02 1.84 16 39 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 40 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 41 H 0.12 5.07 5.64 -2.91 -0.02 5.06 16 42 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 43 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 44 H 0.05 0.47 5.31 -2.38 -0.01 0.46 16 45 H 0.07 0.82 6.63 -2.39 -0.02 0.80 16 46 H 0.06 0.89 6.58 -2.39 -0.02 0.88 16 47 H 0.12 1.14 7.93 -2.39 -0.02 1.12 16 48 H 0.10 0.92 5.89 -2.39 -0.01 0.91 16 49 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.09 1.10 7.56 -2.39 -0.02 1.08 16 Total: -1.00 -73.86 410.81 -0.64 -74.50 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: -0.57 Total: 37.91 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 6.96 Total: -15.23 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -8.77 Total: -104.70 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -0.29 Total: -36.94 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -73.86 -0.64 -74.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113616421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.128 kcal (2) G-P(sol) polarization free energy of solvation -73.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds