Wall clock time and date at job start Wed Apr 1 2020 04:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08994 * 109.47296 * 2 1 4 4 C 1.53004 * 109.46821 * 240.00455 * 2 1 3 5 5 N 1.46499 * 109.47051 * 185.00100 * 4 2 1 6 6 C 1.34782 * 120.00406 * 179.97438 * 5 4 2 7 7 O 1.21591 * 119.99323 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00403 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99933 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47005 * 179.97438 * 9 8 6 11 11 C 1.38328 * 119.96230 * 269.97666 * 10 9 8 12 12 C 1.38280 * 120.13484 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.07150 * 359.67534 * 12 11 10 14 14 C 1.38861 * 119.92830 * 0.59673 * 13 12 11 15 15 O 1.35751 * 120.06597 * 179.69892 * 14 13 12 16 16 C 1.34829 * 117.00376 * 354.17384 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38657 * 120.00083 * 185.03464 * 16 15 14 19 19 N 1.31555 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47410 * 90.00109 * 20 18 16 22 22 H 1.48504 * 109.46801 * 209.99865 * 20 18 16 23 23 H 1.48497 * 109.47495 * 329.99577 * 20 18 16 24 24 C 1.38073 * 119.96947 * 89.99513 * 10 9 8 25 25 N 1.46897 * 109.47435 * 120.00533 * 2 1 3 26 26 C 1.46904 * 110.99938 * 58.95002 * 25 2 1 27 27 C 1.46903 * 110.99847 * 295.00093 * 25 2 1 28 28 C 1.53007 * 117.49470 * 248.74283 * 27 25 2 29 29 C 1.53002 * 117.49671 * 180.08421 * 27 25 2 30 30 H 1.09007 * 109.47035 * 299.99416 * 1 2 3 31 31 H 1.08998 * 109.47496 * 59.99333 * 1 2 3 32 32 H 1.09006 * 109.47531 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47494 * 65.00078 * 4 2 1 34 34 H 1.09005 * 109.47313 * 304.99556 * 4 2 1 35 35 H 0.97009 * 120.00113 * 359.97438 * 5 4 2 36 36 H 0.97001 * 119.99467 * 359.97438 * 8 6 5 37 37 H 1.08993 * 109.47130 * 59.99768 * 9 8 6 38 38 H 1.09003 * 109.47080 * 299.99631 * 9 8 6 39 39 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 40 40 H 1.08007 * 119.96121 * 179.97438 * 12 11 10 41 41 H 1.08001 * 120.03709 * 180.32387 * 13 12 11 42 42 H 0.96998 * 119.99749 * 179.97438 * 19 18 16 43 43 H 1.08001 * 120.03594 * 0.02562 * 24 10 9 44 44 H 1.08999 * 109.47306 * 60.00304 * 26 25 2 45 45 H 1.09002 * 109.47217 * 180.02562 * 26 25 2 46 46 H 1.09000 * 109.47305 * 300.00078 * 26 25 2 47 47 H 1.08994 * 115.55085 * 34.41668 * 27 25 2 48 48 H 1.08998 * 117.49663 * 359.97438 * 28 27 25 49 49 H 1.08995 * 117.49126 * 145.02178 * 28 27 25 50 50 H 1.09002 * 117.49802 * 214.97208 * 29 27 25 51 51 H 1.09000 * 117.50135 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.4999 -0.8264 -1.1907 6 6 4.1729 -1.4291 -2.1909 7 8 3.5681 -1.8860 -3.1416 8 7 5.5160 -1.5263 -2.1367 9 6 6.2475 -2.1810 -3.2242 10 6 7.7238 -2.1567 -2.9225 11 6 8.4991 -1.0944 -3.3513 12 6 9.8542 -1.0687 -3.0769 13 6 10.4364 -2.1011 -2.3676 14 6 9.6618 -3.1716 -1.9407 15 8 10.2323 -4.1906 -1.2487 16 6 11.5735 -4.1633 -1.1132 17 1 12.1356 -3.3148 -1.4746 18 6 12.2311 -5.2244 -0.5097 19 7 13.5398 -5.1978 -0.3780 20 14 11.2590 -6.6921 0.1148 21 1 11.1406 -7.7036 -0.9660 22 1 11.9602 -7.2912 1.2787 23 1 9.9035 -6.2484 0.5283 24 6 8.3011 -3.1949 -2.2187 25 7 2.0197 -0.6926 1.1993 26 6 1.5282 -2.0762 1.2458 27 6 1.6487 0.0390 2.4180 28 6 2.7745 0.7023 3.2141 29 6 2.0882 -0.5530 3.7587 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7515 -0.1582 -2.1371 34 1 1.6053 -1.7198 -1.2953 35 1 3.9824 -0.4622 -0.4320 36 1 5.9984 -1.1621 -1.3780 37 1 6.0592 -1.6523 -4.1585 38 1 5.9123 -3.2140 -3.3172 39 1 8.0453 -0.2835 -3.9015 40 1 10.4570 -0.2381 -3.4134 41 1 11.4938 -2.0779 -2.1491 42 1 13.9998 -5.9400 0.0445 43 1 7.6954 -4.0243 -1.8848 44 1 1.8761 -2.6151 0.3645 45 1 1.9053 -2.5657 2.1437 46 1 0.4384 -2.0743 1.2638 47 1 0.6867 0.5504 2.3849 48 1 3.7904 0.5954 2.8337 49 1 2.5530 1.6499 3.7049 50 1 1.4156 -0.4305 4.6076 51 1 2.6522 -1.4855 3.7364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113616424.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:47 Heat of formation + Delta-G solvation = 6.144701 kcal Electronic energy + Delta-G solvation = -29731.810189 eV Core-core repulsion = 25633.229863 eV Total energy + Delta-G solvation = -4098.580326 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.18521 -39.41825 -39.04174 -37.02924 -36.19930 -34.42607 -33.78200 -32.42934 -31.04006 -30.46531 -29.37539 -26.99997 -26.52772 -25.50485 -24.81466 -22.64246 -21.97321 -21.80383 -20.83463 -20.66283 -19.88374 -18.39919 -17.72918 -17.40205 -17.15803 -16.39433 -15.71032 -15.44990 -15.29530 -15.12092 -14.81191 -14.76179 -14.24875 -14.10769 -13.99344 -13.79227 -13.60395 -13.37014 -13.19071 -12.94723 -12.64696 -12.55520 -12.53890 -12.21069 -12.15941 -11.96175 -11.87361 -11.64945 -11.43614 -11.15250 -10.91581 -10.86926 -10.81629 -10.74008 -10.55294 -10.21085 -10.15611 -9.45065 -9.24010 -8.91894 -8.74944 -8.68429 -8.31776 -7.46360 -6.45366 -4.12571 1.81109 2.17091 2.86780 3.19940 3.24167 3.28362 3.34377 3.38179 3.41901 4.20702 4.24041 4.34610 4.49920 4.53351 4.59503 4.66187 4.69415 4.78368 4.83121 4.89607 5.04906 5.15562 5.15929 5.19805 5.27961 5.28428 5.31916 5.43136 5.46969 5.55261 5.64588 5.69976 5.70663 5.76587 5.78086 5.84101 5.90097 6.03188 6.17243 6.41746 6.44881 6.57927 6.62022 6.69445 6.70187 6.99489 7.04531 7.14613 7.22413 7.51630 7.74437 7.98703 8.11191 8.68543 8.89709 9.51115 10.62116 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010516 B = 0.002189 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.931538 B =12786.192086 C =14206.892866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.070 3.930 3 H 0.091 0.909 4 C 0.149 3.851 5 N -0.738 5.738 6 C 0.702 3.298 7 O -0.601 6.601 8 N -0.737 5.737 9 C 0.187 3.813 10 C -0.074 4.074 11 C -0.185 4.185 12 C -0.078 4.078 13 C -0.212 4.212 14 C 0.156 3.844 15 O -0.216 6.216 16 C -0.391 4.391 17 H 0.107 0.893 18 C 0.064 3.936 19 N -0.878 5.878 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.170 4.170 25 N -0.505 5.505 26 C 0.018 3.982 27 C 0.000 4.000 28 C -0.163 4.163 29 C -0.175 4.175 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.403 0.597 36 H 0.399 0.601 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.134 0.866 42 H 0.280 0.720 43 H 0.118 0.882 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.031 0.969 47 H 0.092 0.908 48 H 0.102 0.898 49 H 0.093 0.907 50 H 0.093 0.907 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.598 12.420 4.427 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.039 4.039 3 H 0.109 0.891 4 C 0.024 3.976 5 N -0.394 5.394 6 C 0.402 3.598 7 O -0.480 6.480 8 N -0.392 5.392 9 C 0.064 3.936 10 C -0.074 4.074 11 C -0.205 4.205 12 C -0.096 4.096 13 C -0.232 4.232 14 C 0.104 3.896 15 O -0.121 6.121 16 C -0.466 4.466 17 H 0.124 0.876 18 C -0.140 4.140 19 N -0.516 5.516 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.190 4.190 25 N -0.229 5.229 26 C -0.130 4.130 27 C -0.109 4.109 28 C -0.200 4.200 29 C -0.212 4.212 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.238 0.762 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.151 0.849 42 H 0.090 0.910 43 H 0.136 0.864 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.050 0.950 47 H 0.110 0.890 48 H 0.120 0.880 49 H 0.111 0.889 50 H 0.112 0.888 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.534 11.633 3.698 27.403 hybrid contribution -0.457 -0.238 1.065 1.183 sum -24.991 11.395 4.763 27.876 Atomic orbital electron populations 1.22378 0.96341 1.02872 1.02786 1.21972 0.93525 0.98801 0.89559 0.89067 1.21185 0.79677 1.00552 0.96198 1.44907 1.07083 1.63566 1.23853 1.15967 0.81781 0.79169 0.82884 1.90906 1.68023 1.54429 1.34662 1.45225 1.04776 1.63491 1.25721 1.19967 0.86811 0.97818 0.89001 1.19290 0.93719 0.94992 0.99446 1.20561 0.94055 0.99231 1.06606 1.20804 0.94462 0.97423 0.96957 1.21360 1.01468 0.95617 1.04743 1.19063 0.91915 0.88114 0.90523 1.83575 1.24006 1.41382 1.63161 1.20758 0.77718 1.07453 1.40669 0.87607 1.24467 0.95146 0.98178 0.96165 1.69643 1.06818 1.32978 1.42152 0.86183 0.80646 0.81447 0.78648 1.19838 1.20772 1.18353 1.20090 0.92748 1.00697 1.05438 1.61969 1.58470 1.02113 1.00335 1.22472 0.98146 0.89156 1.03197 1.22482 0.97526 1.02596 0.88288 1.23089 0.98274 0.96248 1.02436 1.23073 1.03935 0.98636 0.95599 0.91962 0.91425 0.91761 0.91280 0.91720 0.76197 0.76732 0.91132 0.91138 0.87280 0.87011 0.84874 0.91001 0.86397 0.90785 0.91254 0.95016 0.89014 0.87997 0.88890 0.88832 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 8.58 37.15 0.32 -0.67 16 2 C 0.07 0.46 2.51 -67.72 -0.17 0.29 16 3 H 0.09 0.58 8.13 -51.93 -0.42 0.16 16 4 C 0.15 1.31 4.69 -4.04 -0.02 1.29 16 5 N -0.74 -7.49 5.39 -65.22 -0.35 -7.84 16 6 C 0.70 9.63 8.57 -86.92 -0.74 8.88 16 7 O -0.60 -10.53 16.34 5.29 0.09 -10.45 16 8 N -0.74 -9.50 5.55 -66.42 -0.37 -9.87 16 9 C 0.19 2.68 5.80 -5.20 -0.03 2.65 16 10 C -0.07 -1.19 5.25 -104.65 -0.55 -1.73 16 11 C -0.19 -2.91 9.70 -39.53 -0.38 -3.29 16 12 C -0.08 -1.34 10.04 -39.61 -0.40 -1.73 16 13 C -0.21 -4.38 9.17 -39.39 -0.36 -4.75 16 14 C 0.16 3.46 6.65 -39.11 -0.26 3.20 16 15 O -0.22 -5.57 8.59 0.05 0.00 -5.57 16 16 C -0.39 -10.78 9.95 30.89 0.31 -10.48 16 17 H 0.11 2.97 5.44 -52.49 -0.29 2.69 16 18 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 19 N -0.88 -25.04 13.96 55.48 0.77 -24.26 16 20 Si 0.91 21.44 28.62 -169.99 -4.86 16.58 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 24 C -0.17 -3.22 9.65 -39.40 -0.38 -3.60 16 25 N -0.51 -3.54 4.34 -226.90 -0.98 -4.52 16 26 C 0.02 0.13 8.67 60.07 0.52 0.65 16 27 C 0.00 0.00 5.03 -67.71 -0.34 -0.34 16 28 C -0.16 -1.03 10.46 -26.69 -0.28 -1.31 16 29 C -0.17 -1.09 9.73 -26.69 -0.26 -1.35 16 30 H 0.06 0.31 6.34 -51.93 -0.33 -0.02 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.37 6.39 -51.93 -0.33 0.04 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.64 6.70 -51.93 -0.35 0.29 16 35 H 0.40 3.54 8.15 -40.82 -0.33 3.21 16 36 H 0.40 4.57 8.48 -40.82 -0.35 4.22 16 37 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 38 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 39 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 41 H 0.13 2.90 5.64 -52.49 -0.30 2.60 16 42 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 44 H 0.07 0.64 6.44 -51.93 -0.33 0.30 16 45 H 0.07 0.51 6.76 -51.93 -0.35 0.16 16 46 H 0.03 0.21 6.28 -51.93 -0.33 -0.12 16 47 H 0.09 0.54 6.27 -51.93 -0.33 0.21 16 48 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.10 0.70 7.26 -51.93 -0.38 0.32 16 LS Contribution 411.67 15.07 6.20 6.20 Total: -1.00 -30.87 411.67 -10.39 -41.26 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -7.76 Total: 9.09 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -3.12 Total: -10.62 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.93 Total: -46.49 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.09 Total: -16.01 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.86 Total: 16.58 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.87 -10.39 -41.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113616424.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.408 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds